RNA id: XR_005047293.1


Basic Information

Item Value
RNA id XR_005047293.1
length 903
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC118958229
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 48065493 ~ 48066503 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcctaaagaaaagtatgTACATTTTACTcgatacattttccctgacacccaaaagtactcgttacattttgaaggcTTAGCAGGACAAAAAATGgttaaattcacacacttatcaagagacttttacttgagtaattttctattactgtatctttacttttactcaagtatgacaattgggtactttttccaccactgcgaATAATATGGAATTAGCAGCTACGCTAGACATATCAACGACCCCTTCTCAGTTTGGCATGGAGTATTCAGAAGGACACCGAATTCACGAGCAACAATGTGTCTGTCGGCGTAATTAAAAAGTTGAGTAAAGAGGGGCACAACAAAGCTGCCCACCAGTGAATGGATACTGTACATATGGTACATAAAAGAGACAATGGGAGTGAACACCCTTGCAGCAATGCTGCCAATGATCTGCAAAATAGCTGTCCTGTCGCAGATTTACACAAACTACTGCCTCGAACCACCATGATCCAGAAACGGTCGGATGCTTGACTAGTGGCACGATAAATACTGTCTTTCAGAGGACACAGATTGGAAACCTCTCTTCAAAGTTCCTGGAGACCAAATCTGGAAGCGACGAAGCACTATTCTCTCTGACAACACAGCAGCAGCTCccccagcaaaaaaaaaaaacggaatccATTTCCAGCAGCGTAGAGCCCAATAAACGACACCATGAGCAAACAAACAATAACGTGGGACAATTTTAAGAAATGGCAACATTAATAAATAGGTGGCATGTGTTAGTCACTCAAGAAGTGGCGCtaatgcttgctagctagcctgtGGTTATGTTGCATAGCAACTAGTCAAGCAACAAAACTTTTACCGGACTACTTTTTCTGGTGGAATGTATTGATTAAAGCTACATTTTCAATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302516 lncRNA downstream 122309 47941508 ~ 47943184 (-) True G266186
TU302512 lncRNA downstream 144349 47920869 ~ 47921144 (-) True G266182
TU302499 lncRNA downstream 173914 47890398 ~ 47891579 (-) True G266169
TU302355 lncRNA downstream 259533 47749249 ~ 47805960 (-) True LOC110520061
TU302432 lncRNA downstream 317438 47747583 ~ 47748055 (-) True LOC110520059
TU302703 lncRNA upstream 7563 48074066 ~ 48075575 (-) True G266359
TU302704 lncRNA upstream 10077 48076580 ~ 48076886 (-) True G266360
TU302706 lncRNA upstream 11296 48077799 ~ 48079009 (-) True G266362
TU302761 lncRNA upstream 77019 48143522 ~ 48143729 (-) True G266416
TU302770 lncRNA upstream 91011 48157514 ~ 48157785 (-) True G266425
LOC110504154 mRNA downstream 5763 48045708 ~ 48059730 (-) True LOC110504154
XM_036974344.1 mRNA downstream 19546 48033749 ~ 48045947 (-) True fap
XM_036974345.1 mRNA downstream 20038 48033749 ~ 48045455 (-) False fap
XM_021584355.2 mRNA downstream 32059 48032036 ~ 48033434 (-) False LOC110505248
XR_005047221.1 mRNA downstream 135688 47922735 ~ 47929805 (-) True LOC118958137
XM_036974346.1 mRNA upstream 12598 48079101 ~ 48097689 (-) True LOC118958240
XM_021597081.2 mRNA upstream 47731 48114234 ~ 48170057 (-) False LOC110520070
XM_021597082.2 mRNA upstream 167317 48233820 ~ 48269471 (-) False LOC110520071
XM_021597083.2 mRNA upstream 167317 48233820 ~ 48269471 (-) False LOC110520071
XM_021597093.2 mRNA upstream 286906 48353409 ~ 48375756 (-) False LOC110520072
TU302595 other downstream 32191 48032047 ~ 48033302 (-) True LOC110505248
TU302286 other downstream 465678 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 2527951 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 2961230 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 3053244 45010172 ~ 45012249 (-) True G262993
TU304852 other upstream 1428974 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 1435913 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 1497345 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 1497345 49563848 ~ 49567474 (-) True LOC110520112
TU305027 other upstream 1800714 49867217 ~ 49871645 (-) True LOC110520119

Expression Profile