RNA id: TU302894


Basic Information

Item Value
RNA id TU302894
length 1708
lncRNA type sense_over
GC content 0.36
exon number 1
gene id LOC110520071
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 48233820 ~ 48269471 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAACTGTCAGAACGCACGAGTGCATTGAAAGGGATGTCCTACAGTACCACTGAAAGTATTATCAGTACAGCGCAACTGCACTGAGGGATCTTGGGTTTGAGTTCACCCGCATTTCAACGTGATATTTTCCCAATTTGTGTTTCATACGTCTTTCTCAGCTTATTGTGTTTACAATGACAACATATATATTGTTCACCTCCAATGGCGGCACTTACTGAGCAACAGGAGGCTGTAGAATCACTGGCTGTCTATGACTGTTTCATGTTCTAGTGTAGTCTTATGACCAACGTTAACCTGGCAACAGCTGCTTTTTCATGTTACACTATTATAAAGAATAACAGCTGCACAAGAAACAACACTCCGATTTTGCTATATGGCTTTTATTGCCATAGTTAGATGGGATAAAAGTCCCCTGAAGTTAAGTGTAGTTAACCAAATGCACTTTTGAAGCTTTGTTTTGTCATACAACAATTTGTTGTCAAGTCTCCACTTGAAGCCAAAGTGAAATCAACAGTTTTATTTTGACATAAGATATTTAAACTGAAACTGGCAATTACTTACTTTAATAGCGAGGTAAGCAATTTTGCTTATGCCAATAGGGCATGTTTATTCATGAATTTAAGGCAAAGCAATTAAACATATTGAAACGAGCTGTTCAACAAGTTATTTatacattacaatacactacattacactaatTATACAAGCAGTAGAACAGGAAAAACTAAGGGATGAGAAGAAAAACTTCACTAACATCCAAACAAATACAGTTTCTCAAAGTAATTTCGTTTGGAGGGCAACAATGTAAAGGATAGGCCTTTAAGTACAACGAACTGGCTACGGAAAGGTTGATAAGCACATCTATTCTCCTTCACGTCTGACGTCAACGTTAATCACTTGAATGTTGCTTTCCAGCCTGTATCACTTGTCCCTCTGGGTGGGTTTTTTGTTTCCCGAGCTGCTCTAGACGTCGGCTTCATCTTTATGTCGTTCTTATCCGTTATCCTATTTAAACGTTTGTTCTTTATAACCATTTCTACCTCATTGCTACATATTGTACATGTAGTACTTACGTTCTGTCTTTTTTTGAATGTCATGCATTTgtacaaaaataaagaaacaaaaacaaacgacggcaacaacaacaacaaaaaaacgctAAAAGAAAAAAAATGGACCAAAAAATGAACAGCTTACCTCCGAAAGACAGTCCTTACACCAGAACAGTATTATCAGCAGAACTGAGAAGACACATTAGTGAGTGTGAAGTTGACGCTGATGCATACATGAGATACTGACTTCTGTGGGATATATAGGTACTCATAATGCCACATTTCTGCAAGTATATTGTGGGCTGTATAGGTCTTTCTCTAGGGTCTCCAATGCAAATTCCGTTTTTAAACTAGAATGTACTTTGCTTTAATATTTTGTGAACTGTTGTAGTGCGCATGTTAATGTGTCTTTGTGTGCACTTACAATTCAATGTGTAAGTGTGTTGGGTTAACATATTTAGATATGTGAAATTACAAATTTATACATTTCATACATATGTACAGGAAATAAACTTGCACATATGTGTACTCAATGTACATTTGCTATTGATATATACATATTAAAATgcaccacatacagtacagtacatgtttatatgtgtgtatgtattgccATACCTACAGTAAACGTCAATGTATTTTCATCTATTCCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302893 lncRNA downstream 509 48233164 ~ 48233372 (-) True G266547
TU302865 lncRNA downstream 2248 48231423 ~ 48231633 (-) True G266520
TU302863 lncRNA downstream 4120 48229522 ~ 48229761 (-) True G266518
TU302705 lncRNA downstream 63875 48169000 ~ 48170006 (-) True LOC110520070
TU302773 lncRNA downstream 71884 48161779 ~ 48161997 (-) True G266428
TU302903 lncRNA upstream 137 48235725 ~ 48236574 (-) True LOC110520071
TU302912 lncRNA upstream 14036 48249624 ~ 48249849 (-) True G266558
TU302942 lncRNA upstream 46598 48282186 ~ 48282509 (-) True G266588
TU302948 lncRNA upstream 50561 48286149 ~ 48286367 (-) True G266594
TU302953 lncRNA upstream 53057 48288645 ~ 48288977 (-) True G266599
XM_021597081.2 mRNA downstream 63824 48114234 ~ 48170057 (-) False LOC110520070
XM_036974346.1 mRNA downstream 136192 48079101 ~ 48097689 (-) True LOC118958240
XR_005047293.1 mRNA downstream 167378 48065493 ~ 48066503 (-) False LOC118958229
LOC110504154 mRNA downstream 174151 48045708 ~ 48059730 (-) True LOC110504154
XM_036974344.1 mRNA downstream 187934 48033749 ~ 48045947 (-) True fap
XM_021597093.2 mRNA upstream 117821 48353409 ~ 48375756 (-) False LOC110520072
XM_021597095.2 mRNA upstream 117821 48353409 ~ 48378813 (-) False LOC110520072
XM_021597094.2 mRNA upstream 117821 48353409 ~ 48380073 (-) False LOC110520072
XM_021597101.2 mRNA upstream 117821 48353409 ~ 48393399 (-) False LOC110520072
XM_021597100.2 mRNA upstream 117821 48353409 ~ 48393433 (-) False LOC110520072
TU302595 other downstream 200579 48032047 ~ 48033302 (-) True LOC110505248
TU302286 other downstream 634066 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 2696339 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 3129618 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 3221632 45010172 ~ 45012249 (-) True G262993
TU304852 other upstream 1259889 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 1266828 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 1328260 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 1328260 49563848 ~ 49567474 (-) True LOC110520112
TU305027 other upstream 1631629 49867217 ~ 49871645 (-) True LOC110520119

Expression Profile