RNA id: XM_021597093.2


Basic Information

Item Value
RNA id XM_021597093.2
length 3598
RNA type mRNA
GC content 0.44
exon number 13
gene id LOC110520072
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 48353409 ~ 48399492 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTGAGGAAAAGGTGGCAGGTGATTGGGCCAGAGCCTCGGTGACATATATCTGTGGAGTCAGGAAAACGCTGTGATCAGAGGCAGCTCTTTCTAATTAGCTCAGTTCAGCTCCACTGCagtaaagagagcgagggagagctctGCTTTTCGCTTCCCAGCTGACACTGACTCGCtgctctgctttttttttttgttctgctCAGCTCTgcgctgtctgcctgtctggtgCATGTTTCCATGTTCCTCACTAAAAGCCTGGTTTACAATGCTTTGCACTCAGCCCTACATAGGCTGCAGAGTTGGCTCAAATTCACACGTTTGCTTGTCTCCCAACAGAGGGGTAATCAAAGTGTATAATGAGGACAATACCAGTCGAGCAGTAGAGGTTCCCACTGACATCACAGCCCGGGACATCTGCCAGTTGTTTGTCATGAAGAATCATTGCATTGACGACCACAGCTGGACTCTGTTTGAGCAGCTCTCTCATCCAGGCATAGAAAGAACCATAGAAGACCATGAATCTGTGATGGAGGTGCTGTCCGGCTGGGGCATGGACACAGACAGTCGCCTATATTTTCGGAAGAACTATGCCAAATATGAATTCTTCAATAAACCGCTGGATTTTTTCCCAGATCACATGGTGTCCTTATCAAGTGAAACCAATGGGATTATGAACCATTCTCAGCTAATACAGACATTTCTCAACTCAAGCACTTGTCCAGAGATCCATGGGCACCTCCATGCCAAAGAACAAGGCAGGAAGTCTTGGAAAAAGTTCTACTTTGTCTTGAGACGGTCAGGTCTCTACTTCTCCAACAAGGGGACATCAAAGGAACCGAGGCATCTTCAGTTTATTGCCGAGTTCAGTGACGGCGACGTCTACACGTTACTATCGGCGAAAAAGCTACACGGAGCGCCGACGGACTATGGCTTCTGTGTCAAGTCTACTAAGCATGGCTCTCCCCGAGACCTCAAGCTGTTGTGTGCAGATGATGAGCAGACCAGAACCTGCTGGGTCACTGCCATGCGCCTCTTTAAGTATGGGTTGCAGCTGTACCAAAACTTCATTCAACCACACCAGAAACAGAAAACTTCACCTATGAGAAGTATCTCCGAGAACTCCTTGGTGGCCATGGACTTCTCGGGACACAAGAGCCGGGTGATCGAGAACCCATCGGAGGCGCTGTCCGTAGCCGTGGAGGAGGGGCTCTCATGGAGGaGGAAAAGCTGCCACCGTCTGAGCTCCCATGGAAGCCCATCCACCTCCCAGAGTCCCATGTCAAACATAGCCCTCCATATGGCCCAGCCCTGGTTCCAGAGCAAACTGTCCAGAGATGAGGCACACCGCTTAATCACTCAACAAGGTCTAATTGATGGAGTATTTCTTCTAAGGGACAGCCAAAGCAACCCCAAGACATTTGTACTGTCACTGTGCCACACACAGAGAATCAAACACTTTCAGATCTTACCGgtggaTGACGAGGGCGATCTGTTCTACAGTCTGGACGACGGTCACACCCGCTTCACTGATCTGATCCAGCTAGTGGAATTCTACCAGCTCAACCGGGGCGTGCTGCCCTGCAAACTCAAACACCACTGTGCCAGGATCACCCTTTGAGGGGCCAGGGGTCTCCCAGGGCCCAATACATACAGAGGCACCTTAATCACAGCCAGGGCCTCTCCAGAGAACCAACCACCCATgcagccctccctccctatcGTGCCTTGGACAGGAGACACAGAGAACACGGCCAGACATAAGCCAGCTGAAACCACTGTTATAATCACCCACTAGAACCCATCCTCTTGGAGACAAACATGGTAATCGGTCTTTGTAATGACTTTGTTTTTCAATAAAATATGAATTAGAGGTGTTAGGATGTGAAATAGATGAATATTCTGTGtcacaacccactgggcaaaactagtttgaatcaacattgtttccatgtcatttcaacaacgACAACAAAACATCTGTGTGATGCCGTTGAATCATTGTGGAatactgattggatttgcaaataGTCATCAACGTTAAGGAATTTCagttttttttcacccaactttttacCTAAATCAATTGATgtgagtttttttgttgttgcattcacattagttgacaattcaaccaaatgtaaatcaagaTGGTAAAATGACTTCAGTGGGAAGTGACCACAGGTGTTGGATAAAGTGCATCTACTGTAGACTTGATGTCACCGAGAGGGCTCTACTGCGAGCCCATTGGTTGATCCTGTATGTTAGCCCGTGTGTGGAGACAAATCACAAACACCGCAATGACTCATGTGGAGTCCAAACTTCagttaatgtactgtatataatgtggAGCTGATCATGTTTGCATTGTGTATCGGCTTACTTGCTCGTTACAACTTTCTATGGGAATGAACATCTTCTACCGTAGCAAACTGTTGGATCCGTAGAGCGAGAGTGGATATTTGACTCAGTTCACACCATGCGAATAGAATGACCAGTGTGGTATAGCCATAATATTTGTGCATTATTGGCACAGTTAAGCTGAACCTGGTCATTTGTCAGTAGGAGGGGATCACTACTATCAGGTTGTAGGCAAGGCATGATGGGAAATGTAGTATGTAGGCTACAGTGGTCCTCTGGCCTTGGTCATCTCCTGGGTAAACTAAGCTGTTGCTCGTTATTTTTTTCACATCTCAAGGAATTCAGGTATTTTTCTAAAACAAAttatgattaaaaaaatatatattttagaggtATGAGTAGCAGAGAATGCAAAGTGGTTGCATGTTGTTTAAGCTGGACTGTGACCGCTGTAAGAAGAGAGCATGCACAACAATGTGCTTCACTAGCCTGCACTGTACATTACTTTGAATTGTATTGATTGCATTTGAGTCAATACATGTAAAACTGCTCTCTGTTGTTATAGCAAGAGCCACAGAAGATATATTTGACTAAGGGCCGGATTCAATGCTTATTGCCGAAGTTCCACTTTGTTGCCCAATTGACATTTAAAGGGAATGTTCCCGTTTTAGTGGAGACTTCATTCACGGCAAACGCTGCATATgccggctcaatcggaaatgaccttttaAATTTCAAGCACACTGCAGAGCTGAACTTCGGCACTACGGATTGAATCTAGACCTATTTTTAGATTTAAACCACAAAGTGTAAGATAGAAATACAGTATCATATTGTGATTTTTATTGATCAAAATCTGAATTGTTGTACATTGACATTTAATGTTTtatagtcttttttttttaagattcAGGTAAACCATGTGCAGCACCGGGAATGGTTGAATATTGATGTAAACAACAAAACTATGACCTACGTCATGTACTGTTTTGTTGCTTCGTTTTGGAAATGGTACTGTAATCATGCAGCAATTTGTACAGACAGGTTTCACAAGTACGATAATAATGAAACAAGATGTACTGTGCTTTGAAACAAGTTAAAAATAACCAAGACATGTTAACAATGCGTTTCATACAACGTTTCTTTTAAAATAGAGGGAGAACAGTGCATTTAAATAGTAATGCATGTCATGAACTGTCATGTTTTCTAAAGGAAGCTAAATAAAAGAAGCAAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302998 lncRNA downstream 35773 48317384 ~ 48317636 (-) True G266644
TU302968 lncRNA downstream 57338 48295856 ~ 48296071 (-) True G266614
TU302967 lncRNA downstream 57554 48295552 ~ 48295855 (-) True G266613
TU302959 lncRNA downstream 60685 48292487 ~ 48292724 (-) True G266605
TU302958 lncRNA downstream 61043 48291845 ~ 48292366 (-) True G266604
TU304179 lncRNA upstream 128701 48504457 ~ 48505213 (-) True G267706
TU304178 lncRNA upstream 129587 48505343 ~ 48508800 (-) True G267705
TU304215 lncRNA upstream 183863 48559619 ~ 48559960 (-) True G267742
TU304216 lncRNA upstream 184327 48560083 ~ 48560535 (-) True G267743
TU304264 lncRNA upstream 245083 48620839 ~ 48621096 (-) True G267785
XM_021597082.2 mRNA downstream 83938 48233820 ~ 48269471 (-) False LOC110520071
XM_021597083.2 mRNA downstream 83938 48233820 ~ 48269471 (-) False LOC110520071
XM_021597081.2 mRNA downstream 183352 48114234 ~ 48170057 (-) False LOC110520070
XM_036974346.1 mRNA downstream 255720 48079101 ~ 48097689 (-) True LOC118958240
XR_005047293.1 mRNA downstream 286906 48065493 ~ 48066503 (-) False LOC118958229
XM_021597104.2 mRNA upstream 24074 48399830 ~ 48420918 (-) False LOC110520074
XM_021597102.2 mRNA upstream 24074 48399830 ~ 48448287 (-) False LOC110520074
XM_021597103.2 mRNA upstream 24074 48399830 ~ 48448287 (-) True LOC110520074
XM_021584378.2 mRNA upstream 72642 48448398 ~ 48453258 (-) True slc38a11
XM_036974359.1 mRNA upstream 202280 48578036 ~ 48593507 (-) False LOC110520077
TU302595 other downstream 320107 48032047 ~ 48033302 (-) True LOC110505248
TU302286 other downstream 753594 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 2815867 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 3249146 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 3341160 45010172 ~ 45012249 (-) True G262993
TU304852 other upstream 1119721 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 1126660 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 1188092 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 1188092 49563848 ~ 49567474 (-) True LOC110520112
TU305027 other upstream 1491461 49867217 ~ 49871645 (-) True LOC110520119

Expression Profile