RNA id: XM_021597102.2


Basic Information

Item Value
RNA id XM_021597102.2
length 4235
RNA type mRNA
GC content 0.50
exon number 15
gene id LOC110520074
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 48399830 ~ 48448287 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGGTGAAAATACCGCTGGGAGTAAAAACGGGAGAAGAGTGAAGGTATTCAACGCCCCCACGAATGGTTATTTGAATCTCTACTCATAGGTTTTGACGTCGATTTTTGGAGTTGGTATGCTTTTGGCAGAGGCAATTTAGCAGCGCTTGTAGCATGCATCGTGTCACAACTTTGAAATGTAGACTGCTGGCTAAACGTTGGAAAGACTGGGTTGTGCTGGCGGCGTTTTGGAACAGAGGAGCGACTGTTGTGTGGCTCAAGATAGAAGTGGGAGTTCTGGAATTCATTTTGAACGCACCAGTAGCCTAATGTATCACTGAACGAATCAACGCCACGATATATTTTGTACGGTataatttattttcttctccCTAATAAATACCGATGAAAGTTGACAGCAGCGCGGAGGGCCAGGGGCATTCGTGTCCGGGGGACTTTGTTAAACCTGTGCAACTAGTCATGGATGATAATGTGTCCCAACGAACACCACGACGACGACACTCTGGCTCTAGTGTCCAATCTCAACATCTGCACCGGCATCAACATCAAGCTCAGCACCAGGAACTAGTAGTGTCAACCAAAAACAAGGCCCCATCTCCCCCAGTATCAGTGAAGGGGCTAGATGGTGCAGGCCTCTCCCAGAGACACTTTGTATCGGCATTTCCTCAGATGACCATGGACCAGAAGGAGAACCAACTTGAACAGGACCTGACTCTGGTTGTGGTTCTGCCAGGCGGAGTGGAGAAGACCGCCACTGTCCATGGCAGCAAGCCCATGATGGATTTGTTAGTGATGCTTTGTGCCAAGTACCACCTGAACCCATCAGGCTATGTTATAGAGCTCGTCACCACCAACAGAAACCCAATCAAGTTCAAACCCAACACTCTGATCGGGGCCCTGGAGGCAGAGAAGGTTCTGCTCAAACCCAAAGGAATGGAGGACAAGATTAAGAAGCCAATTCCTCAGATGCCAGAGGCAACCGTCCGTCTGGTAATAAACTATAAAAATACCCAGAAGACTATGCTAAGAGTCAGTCCTCGAGTCCCCCTTGAAGACCTCTTACCATCTATTTGTGACAAATGTGAATTTGACCGACAGAGCACATTTTTATTGAGAGATGCCCAATCTAAGGATCCTTTGGATTTGACCTGTTCTCTCAATGATTTTGCAATAAGGGAGGTTTATGCAACAGACACAAAAGCTATGGACTCAGAAGATGTACCTGCCTCTCCCACCCCTACTACCACAACTCATCTAGATACCATTCCACCCAGTAAAGATAAAATGCAGAAGGAGAAAGAAAACAAGGGATTGTTCAGTTTATTCAGGAGGAGTAAGAAGAAACCTGAGCAGGGAATGACTGCTAGTGCCCCGGCGTCCCCAGTCTTTCCCAGCAAGCCTCGACCTCTTAGCATGAGTTCGCTCAGTGCCCACTCCTCCACATTCAACTGCAACTCCATGGCTTCTGACATGCCAAAGAAGAGACGGGCTCCCCTGCCCCCCATGCTGGTGTCCCAGAGATGCCCCTCTAACCTCAGCCACCGCCAGAGGTCCATCTCCGACTCAGAGCCCGAAGCCCAAAAGGACAGTGATCAGATGACTGGTCTGAGTCGCAGCACGGAGTCTTCCCTGAAGAGGACAAAGCGCAAGGCTCCCCTACCCCCTGCATCTCCCAGTGTGGTTGTCCTTGATGTAGCTTCACTAGATGGAGGTGGCCAACTTCCTAATACACTGCAAGAGATCGTGGAGCAGGAGGAGACAACTGCCTCCGTGGTCTTAGACTCTATGAGTGATGTCCAGGAGGACGACAGCAGCCTCAACCTGTCAACAGCAGACATCTCCGTGGACGCTGAGAGAACAGAGGCCCTCTCTCCACCACTGGAGGCCCCAGACACACCGTATGCTGAGATGGAGACCTCTTCACCACCCGAGAGCGAGGGCCCAGCAGGGGAAGATCAGGCTTGTGATCTGTCCTCAGATGGCAAACTAGTGCACAGCATGGTGAACAACACTGAGCGCACGGATCCCATGCTGATTGCCGAGATGGACACATCTGAAGCTGCAGATGAAAGCCCTCCTTGCCAAGCTGAGGAAATAGGTGGTCAGACAGACTTGCCATGTGAAGATTACACAACACAAGATGGGGTCAAAGGTGAATGTAGTACTGAGAGCTCTCATACTATCAGCCCACCAGCAGCCCAGCCTATGACACAGAGTACAGGAACACAGGCCTCAGATCAGCTGGACACTGACCCCTACTATCGTGAACGGCCAGTGGCCACAAGCACCCCCTGTCCCCCTGCTGAGGATGCCCAGGTTCAGACCGATCTCACACCACCATGTCCTGTGTCACCACCCCGACAACAGGAAGTGCCTCCCCCTTCTAAAGCCTCTACCTCTGGAACGGTGGGGCTGAAGAAGGACATGGCCACATCTACAGAGGAGCTGCTGATCCCTGCTGACCCCATCACACCTGCCTTATCTCCTGCCTCAGCAGCCCCTCAGTACCAAACGTCCACTCAAAGTGGCCCGGCCCCTCCGAAGCCATCCAATGAGCTGACCAGGGACTACATCCCCAAGGTGGGGATGACTACGTACACTATCGTGCCTCACAAGACTTTGGAGAAACTGAGAAACTTTGAGCTGGAGCTGATGTTGGAATCCCCCAACGTGGCTCTCGAGAAGGAAGTAGGTTCACTTGAACTCAAAGACTGCACTACACAGGCTGAGCAGTTACAGGTCACAGCAGAACAGACCGAGCTGCAGTCTATTGTACCTTTGGAGTCTTCCCTATCTCAGCAagtcaccaccactactactactactactagtagtagtagtaagagcACTGTAAATAGCAATGTGGTTGAGCCTATTCACTCCCCCTCAACACCAACAAGAATACTTTCTGCAGGAGATGACAAGATTCCATCCCCCTCTAGTGGGGGAGACCAAGCAGGCTTAATAGCAGAGGTCACGGAGATGAAAATTCCACCCGCAACTAAACCCAAGCCTGGCTCTTTCCGCTTGCCACAGCACAAAAGAACACCTGGGTATTATGTAACCTCGGCGGCAGTGAAAAGTTTGAATGCCAGTCCTGGCGCTGGCCAGAGGGAGGCTCCAGGCAGTCtagtggcagcagcagcagcagcgcaGGCACTGCAGCTAGTGGCGGAGGACAGCTTCCCTCCTCCGGTGCAGTGGGAGGAGGAGACATCAGAGGGCGCTAATGTAGTTGACATGGAGCCAAGTGTGCCATCTCCACGGCCCAGTCCTGCCAGGGCGCCCCCATCCCCAGGGCTGAGCCTGGAGAAGCTGAGGAGTTTTGCTGCTCCCAAACCCTACTCTCCTACGACCCCGTCCCGTTTTGCCCAGGCTGTCTCCTCGGCGGTCAAAAGGTCCCGGTCCTTATCCACAGACTCCACCTCACCCTCTCCTCGCTTGCCACCATTCTACCCAATCACAAGCCGCTTTTTAGTCAATGATCCTAAAGGACCATGTGGTGTGGCTATGGGAAGTGacaatggagagggggaggagaacaAAGGCTTGGAGCTCCAGGGAAGGGGGGACCTGAGCGGTGGCCCAGCCAGTGACAACATGACTGTTCAGATGGCAGGCCAGAGTGACCCTGAGCagtggctcagtgtgtgtggggaGAGGAGCTGAGAAGTAATGGATCAACGGAGACATCTACAGAGCCTGATGTCCTGCCCTGGAGTCTGTTCGAGCATGAGCCGAGGAAAGAGGAATAGAAACTTTGAGTTTTTTACGACCTCTGTTGCTAGTCTTAACCTATAAACTGTAGAAAAGACTACTTTTCTGTTTtatgacaaaaaatatctaagtagattattattattgttattatgaaATAATTGTTTGTATTATTATTCATGATTTCTATTTCAAATTCGATGCATATTCTACTTTTCACGCGTGTTATTTTGTCCAAAGAAAGTATATTATTAGTTTCCATATTCAGTTGTAATTGTCATTGAGAAAATACAGTAGCCTATTTTAATACTGTCTTTCATTTTGAAGAGGTTCAATTTGATGGACCTGAAAGTGATACTTATAAATCCCTCAGTCCATTTTGTATTTTGTGTTACTCATTTGATTTTGATAAAGCTGTGCCCAGACACACTGGTATGTAGAGTATTTCTCTGAACATATGATGCTGTTATGAATAAAGGTTACTGTCGAGTATATTAAAGTATTCTATTGACAATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302998 lncRNA downstream 82194 48317384 ~ 48317636 (-) True G266644
TU302968 lncRNA downstream 103759 48295856 ~ 48296071 (-) True G266614
TU302967 lncRNA downstream 103975 48295552 ~ 48295855 (-) True G266613
TU302959 lncRNA downstream 107106 48292487 ~ 48292724 (-) True G266605
TU302958 lncRNA downstream 107464 48291845 ~ 48292366 (-) True G266604
TU304179 lncRNA upstream 56170 48504457 ~ 48505213 (-) True G267706
TU304178 lncRNA upstream 57056 48505343 ~ 48508800 (-) True G267705
TU304215 lncRNA upstream 111332 48559619 ~ 48559960 (-) True G267742
TU304216 lncRNA upstream 111796 48560083 ~ 48560535 (-) True G267743
TU304264 lncRNA upstream 172552 48620839 ~ 48621096 (-) True G267785
XM_021597092.2 mRNA downstream 338 48353409 ~ 48399492 (-) True LOC110520072
XM_021597088.2 mRNA downstream 356 48353409 ~ 48399474 (-) False LOC110520072
XM_021597090.2 mRNA downstream 356 48353409 ~ 48399474 (-) False LOC110520072
XM_021597086.2 mRNA downstream 357 48353409 ~ 48399473 (-) False LOC110520072
XM_021597097.2 mRNA downstream 358 48353409 ~ 48399472 (-) False LOC110520072
XM_021584378.2 mRNA upstream 111 48448398 ~ 48453258 (-) True slc38a11
XM_036974359.1 mRNA upstream 129749 48578036 ~ 48593507 (-) False LOC110520077
XM_036974358.1 mRNA upstream 129749 48578036 ~ 48610322 (-) False LOC110520077
XM_036974357.1 mRNA upstream 129749 48578036 ~ 48610356 (-) False LOC110520077
XM_036974356.1 mRNA upstream 129749 48578036 ~ 48610361 (-) True LOC110520077
TU302595 other downstream 366528 48032047 ~ 48033302 (-) True LOC110505248
TU302286 other downstream 800015 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 2862288 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 3295567 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 3387581 45010172 ~ 45012249 (-) True G262993
TU304852 other upstream 1047190 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 1054129 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 1115561 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 1115561 49563848 ~ 49567474 (-) True LOC110520112
TU305027 other upstream 1418930 49867217 ~ 49871645 (-) True LOC110520119

Expression Profile