RNA id: XM_021597118.2


Basic Information

Item Value
RNA id XM_021597118.2
length 3732
RNA type mRNA
GC content 0.44
exon number 18
gene id LOC110520082
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 48798439 ~ 48824632 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAAATGTTATAGGCCTATCACAAATTCAAGTGCACGGTTTTGGACATGATTTTGCGTTATAATTTATTTCCGTCTTTTTGTGCTGAAAGTTGCGCGGCTATTTCCGGATGTTTTCATCACAGGCCGTAGTAATTCTCCGCAGCAGCTGACACTTCTGTAGTCAGGAGGAGAAGGTCTGGGGTCGCTAAGTAGctcagtagcagcagcagcagcagcagcatcatggcGGAGCAAGGCGGATCTCCTGCTCCTGTCCAGAATCCGCAACCAGTGCTGACAATGAGCTGGCCAATTACCAGGGAGTCTTACGAGTTACAGGAAGTCATAGGCAGTGGGGCCACAGCCGTAGTGCAGGCTGCCCTCTGCACCCCCAGACAAGAACGCGTGGCCATAAAGAGAATAAACCTGGAGAAATGCCAGACCAGCATGGATGAGCTATTGAAAGAAATTCAAGCCATGAGCCAATGCAACCATCCAAATGTTGTCACCTACTACACCTCATTTGTGGTAAAGGATGAACTTTGGTTAGTCATGAAACTTCTGAGTGGAGGATCCATGTTGGATATAATAAAGCATACATTTAGCAAAGGAGAGCACAAAAATGGAGTCCTTGATGAGCTCATCATTGCAACCATACTAAAAGAGGTCCTTGAGGGACTTGACTATCTGCACAGAAATGGACAGATTCACAGGGATGTGAAGGCTGGGAACATCCTGTTGGGAGAGGACGGCTCTGTTCAGATTGCAGATTTTGGAGTTAGTGCCTTTTTGGCCACTGGAGGGGATatgaccagaaacaaagtacGGAAGACCTTTGTGGGCACACCATGTTGGATGGCCCCTGAAGTAATGGAACAGGTACGAGGCTATGATTTCAAAGCAGACATTTGGAGTTTTGGAATCACTGCCATAGAGTTGGCCACAGGGTCTGCACCTTACCACCGATACCCACCCATGAAGgTCTTAATGCTGACCTTACAGAATGATCCCCCCACCCTAGACACGGGTGTGGAGGATAAAGAGATGCTGAAAAAATATGGGAAATCATTTAGGAAGCTAATAACCCTGTGCCTTCAGAAGGAGCCCGCCAAGAGGCCTACAGCAACAGAACTTTTGAAATGTAAATTTTTCCAGAAGGCCAAGAACAGAGAGTATCTGATTGAAAAGCTGCTATGCAGAGCACCGAACATAACCCAGAGAGCCAAAAGGgtgaggagagttccaGGGTCCAGCGGCCATCTGCACAAGACGGAAGACGGAGACTGGGAGTGGAGTGATGATGAGCTGGACGAGGGGAGCGAGGAGGGCAAGGCTGCTGTCAATCAAGGCAGGTCGCGAAGGGTCAGAGAGGAGAACGAAGATGAAAACGAAGACGATGAGGAGAACGCCAACACTATTCCCATTGAAGGGCTATCCATTCAGCATCCACAGGTTCAACCATTTGAGAAGAACACAGGGCCCTATATTCAAGGTGCTCTAAATATGGTCCTAAGGCTAAGGAACTCCAAGAAGGAGCTCAATGACATCCGGTTTGAGTTCACCCCTGGCCGAGACACTGCCGATGGGGTTTCCCAGGAGCTATTCTCAGCTGGCCTCGTCAATGGACACGATGTTGTTGTCGTTGCTGCTAACCTTCAGAAAATTGTAGATGACCCGACCACCTACAAAGTGTTGACCTTTAAACTGgtctcTGGCTGTGATGACACTGAGATCCCAGACAACGTGAAGTTGATTGGCTTCGCCCAGCTGAGTGTTAGCTGATGCCCGCCTCATCGTGGCCATAGCAGGTGAGATGGAGGAGTCAGGTCagagcagacagtcagacagacgccCCTTCCTTTCTTACATTCTCCCCTGCCCCGATGCCCAGCTCTGTCACAGATCCACTCCGCTAGCTCCTCCCCCGCCCCGCCACTGGCTCACCGCCCCCCAGGCTAGGTCATGTGTACAGAACAGGATTCAGCCAAGAAAACTAAAGATGTTCTCAGGTGGTTATAGCTGGGGATAAAACAGTGGCTTAGgggttgtgtttttttgttgattATGTTACCTCTGCTTTCAGCGAAGCTCTTACTATTATTTATTGAATTTATAAACTTTTATTTGTTTCTCACCGTCATGTTTTCATGGTGGAAAATATTTGCTTCTTCAACTTCCATTTCACAGACTACTCATTTGAGATCAAGAAATGTTTCCCTTAGCTCTGTGTTGTAGTCCCTCTTCAGAATGTAAGATTTCATTTGATGGAAGAAGCACATTTTCATGATAACATTATGAATGTTGTAAAAGGAATGAACTGTACTGTGTATAGATGAACGTAAACCAATACATTGAAGGGACCCGTTTTCGTTGAAAGTGAAGGATAGGTGAAACCTGAATGCTGCCGTGTGTAATGTGCTGCTTATTCATATGACAGTGTTGATGCTTAAAAATGCTAGAGGTGCCTTGTTCATTGATCTGTACCTAAGAACGTAGGTAATGAGTGAGACCGCGAAAAGCAGAACTTGTTTATGTTGGTTGATTTTAAGACCATTTCACAAACATACATCTGTATATTCCAGCAGTGATACAACTCAATGGTAGTATTTTCTCAAGTCAATAGTTATCCTCTAAGGACAAGCTACAATGCACTTTTGGGCAGAGTATATGCACCTGACAAAACAATGCTTAGCCCTGGGAGAATCACGTTATGAATTGTAATGAGAATTTAACCTGTATGCTTTGTCGTCAGACAACAATGGTCATTTGAAACATAACACAAACCATAATCCTGTAATATGCTTCAGCTGATGTGTTTTCGGAAGCCAAATTAATTGAtaaagggctctattcaatcagatccgctttagccaGCATCCGCCTGGCGGTTGCTTTGTTGGTGTTGGAGGTGGAACTGCGGTAGAGCTGTCACATCCACAAGTGGCTGTTGGCATTATACCTAAtgcggacattgccattggtgGCACCAAGTTGGCCAAGGTGGCATTAAGAGAAATTCCATGCAGCCACGTTTACAATttcgaacactggaatgtgagatgtcatctacacctcgattaggctGGTAGAAATGAATCGATTAATGATTTTCTATTTGAGTGTCGTCATTTCTATACagcctacactttctcgttcCGAACTTCTAATGCGAGTGGGAtgggtgtggcttcgtgacaatgatcaagagcagctgctcaccgatttgacagctccaacgcaGTTACACTTATGACACCGCCAGAAACATCAGCTATGCGGGTGTGGGCTACCGACGGTTAATGCTTGATCTGATTAAATCTAGGCCAAAATCTTGAAAAATGTAGTTTCTTGCTCTGTCTTACTGCACTACAATATGTTTTTTCCTAAATATATTAGTCTGAAATGTACTGTATAACAATGCATCTGCAAACGAAACCCAAAGGCAACTATTGAAAGGTTGATGAGCCATTTGTTTGTCCAAACAAGTACAGTAGCtctaaattataattattttctaaagtggaaaataaatattaacTTGTATTAAATACGTTATTTGAATAGCTAAATGAATGTGTttttttatgtacagtatgtgaaccATTTCTGCATATTATCTTTGTTCCCTTTCtgtaatcggccgatttaaacaTTTCTGCATATTATCTTTGTTCCCTTTCtgtaatcggccgatttaaacaTTTCTGCAGAGGAGCAACAAATAAAAATTAATTGCAATTATTAAAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304371 lncRNA downstream 16939 48781285 ~ 48781500 (-) True G267890
TU304369 lncRNA downstream 18082 48777514 ~ 48780357 (-) True G267888
TU304367 lncRNA downstream 23040 48775030 ~ 48775399 (-) True G267886
TU304366 lncRNA downstream 23559 48774548 ~ 48774880 (-) True G267885
TU304264 lncRNA downstream 177343 48620839 ~ 48621096 (-) True G267785
TU304443 lncRNA upstream 31691 48856313 ~ 48858624 (-) True G267939
TU304500 lncRNA upstream 161735 48986357 ~ 48986607 (-) True G267990
TU304501 lncRNA upstream 162241 48986863 ~ 48987116 (-) True G267991
TU304556 lncRNA upstream 222152 49046774 ~ 49048127 (-) False G268042
TU304557 lncRNA upstream 222152 49046774 ~ 49048127 (-) True G268042
XM_036974356.1 mRNA downstream 188078 48578036 ~ 48610361 (-) True LOC110520077
XM_036974357.1 mRNA downstream 188083 48578036 ~ 48610356 (-) False LOC110520077
XM_036974358.1 mRNA downstream 188117 48578036 ~ 48610322 (-) False LOC110520077
XM_036974359.1 mRNA downstream 204932 48578036 ~ 48593507 (-) False LOC110520077
XM_021584378.2 mRNA downstream 345181 48448398 ~ 48453258 (-) True slc38a11
XR_005047558.1 mRNA upstream 34709 48859331 ~ 48873896 (-) False LOC118958775
XR_005047559.1 mRNA upstream 47445 48872067 ~ 48873896 (-) True LOC118958775
XM_036964913.1 mRNA upstream 55227 48879849 ~ 48881507 (-) True LOC118936376
LOC110504168 mRNA upstream 57442 48882064 ~ 48887719 (-) True LOC110504168
XM_036974376.1 mRNA upstream 81789 48906411 ~ 48966442 (-) False LOC110504179
TU302595 other downstream 765137 48032047 ~ 48033302 (-) True LOC110505248
TU302286 other downstream 1198624 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 3260897 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 3694176 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 3786190 45010172 ~ 45012249 (-) True G262993
TU304852 other upstream 670855 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 677794 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 739226 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 739226 49563848 ~ 49567474 (-) True LOC110520112
TU305027 other upstream 1042595 49867217 ~ 49871645 (-) True LOC110520119

Expression Profile