RNA id: XM_036964913.1


Basic Information

Item Value
RNA id XM_036964913.1
length 1512
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC118936376
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 48879849 ~ 48881507 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCCCAGAGTGATCTCTGCCATTGTGATCAGTGGGAAGGCACTGGGAAAAGCTTTCTCATTAAGCCACAGATTATGCCAAAACCAGATTACAGCTGCCCAGTTGTTCAAACTGTTGATGAGAGAAACGTGTCTAAATTTTTCCATTACAAATTCAATTTATTCAATCAGACATTTTCAGGAAAATTTGGTGTGTAATAATGCCATGCCCTCTCTCCAGGAGCATTTAAAAAAAGGGGGGTTAAAATTCATGAACTGCAAGTTCACCTATCCAACCCGGACTGACATCCAGGTGTTACATGGACTACTGGTGTCTTTGAAGCCGGGCCAGAACCTGACCTTTGTGGGCAGCAGTGGCTATAGGAAGAGCACTAGTGTACAGCTGTGGGAGAGGTTCTATGATCTAGATGAGGGCAGATTGATTGATGGCTGTCCATCACACACTGTCAACGTGCCCTTCCTGAAGGCTCAGATTAGCATTGTCTCCCAAGAACCAGTGCTGTTTGACTGTGGTATTGCTGAAAATATCCAGCATGATGATAACACAAGGAACGTGAGCATGGTGGAGATTGTTGAAGCTGCCAAGAAAGCTCATCTCCAATACTTTGTGATGACTCTACCAGATGTGAGTAGTGTAACTGAAATTGTACTATCTTTTGTAATACTTCTATGTCATAATATCCCACTTCACTTTGTACTGTGGCGAATGTCAAAGATGAATATTTTATTGTGGTGGGAACATGTTATTATCTTCTGATACTGTTTGCTCTCATTGTATTGTAAGTACTGTACTGGACATTCCTGTGTTTGACTATCGCCAATAGAAACTCAAGATTCTGGTACTGGATGAGGCCACCTCTGCATTGGACACAGAGAGTGAAAAGGTTCCCAGATAGCATAGCCGTCATGTCCCAAGGCGCTGTCATAGAAAGAGGGACTCATGAGAAATTCATGGCTGAGAGAGCTATCTACTTTAGAAATCTTTATACTCTCTTTGGATAATTCATTCCAATCATTTAAAAGTTAACAGCAGGTATTTTGCATAAACTAGTCACAGCAGGGGCTCCAATCAGCTAAACCAAATTTTTCTAGAGATGGGATGCATTACGAGGAGATGGAGTTTGTCACTAACCAAAGTACATCTATGTGATATTTTTATGATACATGTGGAATAACTATAGACTAAACATCAAAGTCCATggcgggaagtattcagaccgcttaaTTTCTTACAAattctgttacattacagccttattctaaaatggaatacattttttaaaatcctcatcaatccacacacaatagcccataatgacaaagcaaaaacaggtttttagaatttgtgcaaatgtattaaaaatacaaaacagatAACTTATTTACATTCAGACCGTTTGCTAAGAGACTTAAGAttttgctcaggtgcatcctgtttccattgatcatccttgagctgtttctacaacttgattgaagtccacctgtgataaatgtAATTGTTTGGAcaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304443 lncRNA downstream 21225 48856313 ~ 48858624 (-) True G267939
TU304371 lncRNA downstream 98349 48781285 ~ 48781500 (-) True G267890
TU304369 lncRNA downstream 99492 48777514 ~ 48780357 (-) True G267888
TU304367 lncRNA downstream 104450 48775030 ~ 48775399 (-) True G267886
TU304366 lncRNA downstream 104969 48774548 ~ 48774880 (-) True G267885
TU304500 lncRNA upstream 104850 48986357 ~ 48986607 (-) True G267990
TU304501 lncRNA upstream 105356 48986863 ~ 48987116 (-) True G267991
TU304556 lncRNA upstream 165267 49046774 ~ 49048127 (-) False G268042
TU304557 lncRNA upstream 165267 49046774 ~ 49048127 (-) True G268042
TU304518 lncRNA upstream 173958 49055465 ~ 49057482 (-) True ccdc173
XR_005047558.1 mRNA downstream 5953 48859331 ~ 48873896 (-) False LOC118958775
XR_005047559.1 mRNA downstream 5953 48872067 ~ 48873896 (-) True LOC118958775
XM_021597119.2 mRNA downstream 55217 48807438 ~ 48824632 (-) False LOC110520082
XM_021597117.2 mRNA downstream 55220 48798439 ~ 48824629 (-) False LOC110520082
XM_021597116.2 mRNA downstream 55221 48798439 ~ 48824628 (-) False LOC110520082
LOC110504168 mRNA upstream 557 48882064 ~ 48887719 (-) True LOC110504168
XM_036974376.1 mRNA upstream 24904 48906411 ~ 48966442 (-) False LOC110504179
XM_036974377.1 mRNA upstream 24904 48906411 ~ 48966442 (-) False LOC110504179
XM_036974378.1 mRNA upstream 24904 48906411 ~ 48966442 (-) False LOC110504179
XM_036974380.1 mRNA upstream 24904 48906411 ~ 48966442 (-) False LOC110504179
TU302595 other downstream 846547 48032047 ~ 48033302 (-) True LOC110505248
TU302286 other downstream 1280034 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 3342307 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 3775586 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 3867600 45010172 ~ 45012249 (-) True G262993
TU304852 other upstream 613970 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 620909 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 682341 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 682341 49563848 ~ 49567474 (-) True LOC110520112
TU305027 other upstream 985710 49867217 ~ 49871645 (-) True LOC110520119

Expression Profile