RNA id: LOC110504168


Basic Information

Item Value
RNA id LOC110504168
length 1533
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110504168
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 48882064 ~ 48887719 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGAAGGATACAACATCACCTGGATTAATGGTTCAATATATGAAATAGCAGAGAGCGCAACGGTCTTCTGTGGGGTGGATATTGAAGCACGGATGACCATGTTTGCATATTACTACGCTTGTATTGGATTAGAATATTTCATTGTTAGTTATTTCCAAATTGTCCTCTGCGTATCTGCTTCTACAAGACAGATCCAGAGAATCAAGAAAACTTACTTTAGGAAGATCATGAGAATGTATATTGGTTGGTTTGACTGCAATTCAGTTGGAGAATTAAACACTAGGATGTCAGATGACATCAACAAGATCAGCGATGCTATAGCTGACCAGGTGTCTATCTTCATCAAGAGGATCTCCACTTTCATCTTCAGCTTCATGGTGGGGTTCATCAGAGTTTGGAAGTTGACCCTGGTGGTCATCACAGTAGGCCCACTTATAGGACTTGCTGCTGGGCTAATGGCCATGGCTGTTGCCAGACTGACAGTTCGGGAGCTCCAGGCCTATGACAAGGCAGGGGCAGTAGCTGATGAGGTACCGTCATCCATCAGAACAGTGGCAGCCTTTGGAGGAGAGGGTAAACATTTGAACAGGTATGACAAAAACCTTATTGAGGCTCCGAACTGGGGTGTGAAAAAAGGGGACGATCATTGGAGTGTTTCAAGGATACCTGCGGTGTGTCATCTTCCTCTGCTATGCTTTGGCATTCTGGTATGGTTCTAAACTGGTGATAAATGCTGCTGTAAGATTGTTCTTTGTGGTTCCCATGGCAGCTATGAACCTGAGTCAGGCCTCTCCCTGACTGGAAGCCTTCGCCTCAGGTCCAGCTGCAACCAAGACAATCTTTGATACCATTGACTGGGAGCCAGAAATCTATTGTTTCTCAGAGGAGGGTCACAAACTACAAGGTGAAGGCTGATATTGAATTAGACTACATCACATTTAACTTCCCCTTTCGACCAGAAGTAAAGGTAACCCTTTTTGCTCAGCTCTTTATTTTAGCAGGAGAAACCACAGCTTTTGTTGGGCCAAGTGGTTCAGTTTCTCATTCATGGGTGACTTTGGATGGCCGTGACATCTGCAGCCTGAACATCCAGTGCCTTCGCTCTCTGATTGGCATAACTATTGCTGAGAACATCCGCTATGGGTGACCATGGACGACATTATCCAGGCCACCAAGGAGGCTAACATCTATAACTTCATCATGGACCTACCACCGAGGTTTGATACACTGGTGGGTGAGGGTGGTGGtcagatgagtggaggacagaagaaGGATTCATATCGCCCACGCTCTGATCCACAACCCCAGGATCCTGCAGCTGGACATGACTACCTTGGCTCAACGAGAGTGAGGCTGTTACACAGGAGGCACTTGACAAGGTGGAGGAGCAGCTGAAAGGAATGGCAAGAgattttgaaaaagtcaaagcAGCTGCAGACACATTTGTTCAGTGGGCCAACAGGAAGTTGCAGGAACGGGATGGGGAAACAGAGCTGGAGTTAGAGATCACTCTGCCAACAAAAAGGGCTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304443 lncRNA downstream 23440 48856313 ~ 48858624 (-) True G267939
TU304371 lncRNA downstream 100564 48781285 ~ 48781500 (-) True G267890
TU304369 lncRNA downstream 101707 48777514 ~ 48780357 (-) True G267888
TU304367 lncRNA downstream 106665 48775030 ~ 48775399 (-) True G267886
TU304366 lncRNA downstream 107184 48774548 ~ 48774880 (-) True G267885
TU304500 lncRNA upstream 98638 48986357 ~ 48986607 (-) True G267990
TU304501 lncRNA upstream 99144 48986863 ~ 48987116 (-) True G267991
TU304556 lncRNA upstream 159055 49046774 ~ 49048127 (-) False G268042
TU304557 lncRNA upstream 159055 49046774 ~ 49048127 (-) True G268042
TU304518 lncRNA upstream 167746 49055465 ~ 49057482 (-) True ccdc173
XM_036964913.1 mRNA downstream 557 48879849 ~ 48881507 (-) True LOC118936376
XR_005047558.1 mRNA downstream 8168 48859331 ~ 48873896 (-) False LOC118958775
XR_005047559.1 mRNA downstream 8168 48872067 ~ 48873896 (-) True LOC118958775
XM_021597119.2 mRNA downstream 57432 48807438 ~ 48824632 (-) False LOC110520082
XM_021597117.2 mRNA downstream 57435 48798439 ~ 48824629 (-) False LOC110520082
XM_036974376.1 mRNA upstream 18692 48906411 ~ 48966442 (-) False LOC110504179
XM_036974377.1 mRNA upstream 18692 48906411 ~ 48966442 (-) False LOC110504179
XM_036974378.1 mRNA upstream 18692 48906411 ~ 48966442 (-) False LOC110504179
XM_036974380.1 mRNA upstream 18692 48906411 ~ 48966442 (-) False LOC110504179
XM_036974381.1 mRNA upstream 18692 48906411 ~ 48966442 (-) False LOC110504179
TU302595 other downstream 848762 48032047 ~ 48033302 (-) True LOC110505248
TU302286 other downstream 1282249 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 3344522 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 3777801 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 3869815 45010172 ~ 45012249 (-) True G262993
TU304852 other upstream 607758 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 614697 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 676129 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 676129 49563848 ~ 49567474 (-) True LOC110520112
TU305027 other upstream 979498 49867217 ~ 49871645 (-) True LOC110520119

Expression Profile