RNA id: XR_002472936.2


Basic Information

Item Value
RNA id XR_002472936.2
length 2490
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110520089
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49047704 ~ 49051068 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAAGTAGTGAGAGGGATAGTGGGAAGCCCAGTGGGATAAGCTGGAACGAGATGGTTTTGGCCTAAATTCGGCTAATTTCCTCACTGGTGAAACCTTTGATCTCAatgcagttttctgttcccaaaattAGAATCTGTTaagaacagagtggactaagttttgcaGTCGTTACTCTTTGCCAAAAATTGCGTTGATTAGGAGTGCAAAGGCGAATTTAGTTATTGCGCACATGCATTTCAGAGTATGTGTTCCCTAACGAAACTATGCAAATTCACAATTTGATCAAACGGAAACGAAAATAGATTTACACCAGTTAACACTTGGAACACACCGGCACTGCATTTTTGTACACCATAATTACTTTAATTTCCAAtgaaacgctgcgtttgccttgcagcattgcgttgcagtgCGTAACTGTaaacggcttgacagaaatggtagcagaaggtgaatgttgaacttttgttgcatacaTTTCCAGATGAAGCTGCATACTATTTTGCCCAAAAACGCTATCGGTGTGTTCGAAAAGTAACGCTTAAACGGCAAGATGTTTTCGTAACAGGACGGACGTTGACATTGTCCTCACGTGAATAGCATGACACACTTTTAATGTCAATGCTAAGGCTAGCCGACTAAACTTAACTCTATGATTTACGATGAAGTTGGGCAGCGAATAGTGTGGGCGAATTGGAGCTCCGAAGTCATATTAAATTACGTGTTTATATTTAATAAACTATATTTTAGATAGAACAATGTCGTGTGTAATTTCGGGCTATTCTTTGGGTACTGAAATCAGTAGGTTTTGATAAAAACGTAATTTGATGTGACGTCTGTGCTCTAGTTCGCCCACACGAATGGCCTCTCAACTCTGTCGTAAATCGTGTCGTTGCGTTTAATCGTCTAAGTCAAAACCACGATTTTCCAATGATGAGGGATAAGAATTTGCCAAGAAAATTATTTTGTAATATTATAATTATACTGTATAGACATGCTGGTTAGATATGAATAAGGACACCATCACTGTCAGTCAGATGTGTTTGTGACATTGTTGCTGGATGCATGAATGAATGGTTTAGATGTTTCACCAAAGGAATATGCAGGCATTTCTCCTTCCCTGTGGATTCTAAGTTATGTTGGCCTGATCTTGGCAGTGGTTACCTTCTGAAGATGTGGCATTCCATTCTCACTTGAACTAGGCCCCATGGCCTTGTTTTGGCTCCAAGCTGTGACTGGGAGCTTCTACTTTTGCAGGTTTCTGCATGGGGGGTGCAGTGAACCGGGACCAGGTTCTAGAGCAGCTTGGCACCTGCTAAGGTGAAGACCAAGTGTTGGAGGTGGTGGGCAAGAACAAGGCTAAACTGACTGTGAACCATGTTGGCTGTGCCATGGTCATGCTCTGGCAGTTCCAGTGAGAGAAGCAACAGATGCTGAGAACGTTTTGAGTTCTTTAAAAGCCACCCTGAGTTCCTGACTCTCCGGGTGCTGGCTGGGAACTAAATTGAGCTCGTGGATGATTTCACATTGGTGGACATGCTCTAAAATGTTCTCAGGTACAGATGTTGGCTAGATTTCTGATGCCTTCACTGTTTAAGTTTGCTGTCTCCCTAAGTGATCAACATCTGCAGAACAGTCCTCTGATGGGTCAGATCACTGACATTTTGAATAAAAAATTCTCCACAATTGATGATGTGAGGCTGGAGAGTACAACACTGCTTTAGGCAGAGGAGTTTAATGCCAGCGGGCCCTGGCTGTGGCAGAGACACTGGAGGAGATTCAGCGTAGAAACCTGCAGCTGATCCAAAGATTGTGTCAGTAGTCCACAAGAACCTACATGTTTTCAAGCCCATTGAGATATCCAGGATCACACAAACCCTGATCCTGCTGCATTACCAGAGTCCAGAGCTCTTCACTAAATTAAGGAACATCCTAGTTCAGACAGTGTCTACCCATATGAGGTGACCATGCTACCTGGACTCGACGAAGGCGTAATTTCATGGGTGGATGCAGTGCTGCTCCAGTGTAATCTGAATGAACCTTTGCAATGGCTGTCGCTAAGTGGGTGAGCAATGACCCGTCCTACCGACACAACACTCCCAGCAAGTGTGTGCGTCTGCTGCACTGAACCGCTGCGTGCATGAGTGCCTGCGCAAGGCTGAGTGCCTGGACCGGATGTTGGAGGAGCTCAAGTACATGTCAGGGGAATGGTTTGAGGAGATTCTGCTGGAGGAGACCATGGTTACGCTCCGGAGGCTGGAGAACCAGATATCTGGGCCAATGTGCCCGAGATGGCCCTTTTTCTGACCATGACTAGTCACCTCTCTACTCCATTAATGGACCGCGTAGCTAGCATGACCATGGAGCACATCAACAAGTACTCAGCAACTTCATGCCACCGTGCTGCCCTTTGCTGTACTGAATTATAATCCAGCAAGGGTGGATGAGCTGTTTGACATCTGCATTCAGCACTTCATACCTCACATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304501 lncRNA downstream 60588 48986863 ~ 48987116 (-) True G267991
TU304500 lncRNA downstream 61097 48986357 ~ 48986607 (-) True G267990
TU304443 lncRNA downstream 189080 48856313 ~ 48858624 (-) True G267939
TU304371 lncRNA downstream 266204 48781285 ~ 48781500 (-) True G267890
TU304369 lncRNA downstream 267347 48777514 ~ 48780357 (-) True G267888
TU304518 lncRNA upstream 4397 49055465 ~ 49057482 (-) True ccdc173
TU304612 lncRNA upstream 80879 49131947 ~ 49134168 (-) True G268093
TU304641 lncRNA upstream 127750 49178818 ~ 49179243 (-) True G268122
TU304646 lncRNA upstream 134606 49185674 ~ 49185920 (-) True G268127
TU304656 lncRNA upstream 144595 49195663 ~ 49195895 (-) True G268137
XR_005047693.1 mRNA downstream 91 49046323 ~ 49047613 (-) True LOC118958916
XM_036974377.1 mRNA downstream 81262 48906411 ~ 48966442 (-) False LOC110504179
XM_021597129.2 mRNA upstream 5975 49057043 ~ 49061418 (-) False ccdc173
XM_036974384.1 mRNA upstream 6895 49057963 ~ 49075170 (-) False ccdc173
XM_021597150.2 mRNA upstream 251965 49303033 ~ 49332307 (-) False LOC110520100
XM_021597148.2 mRNA upstream 251965 49303033 ~ 49332313 (-) False LOC110520100
XM_036974411.1 mRNA upstream 251965 49303033 ~ 49357448 (-) True LOC110520100
TU302595 other downstream 1014402 48032047 ~ 48033302 (-) True LOC110505248
TU302286 other downstream 1447889 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 3510162 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 3943441 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 4035455 45010172 ~ 45012249 (-) True G262993
TU304852 other upstream 444409 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 451348 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 512780 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 512780 49563848 ~ 49567474 (-) True LOC110520112
TU305027 other upstream 816149 49867217 ~ 49871645 (-) True LOC110520119

Expression Profile