RNA id: XM_021597148.2


Basic Information

Item Value
RNA id XM_021597148.2
length 3695
RNA type mRNA
GC content 0.46
exon number 23
gene id LOC110520100
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49303033 ~ 49357448 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACATTTTTGCCTAGGAGCATGAACCTCGCGATAATGTTTGCACACGATGCGTGACGTTTGATGTAAGGTAGCTTATTAAGTTCATTTTACAAAGGGAACTTAAAGATCCACCGCAGAGCTCTTAAGCTTGATGAGTGTCCAAAGTAACAGTGGAAGTTTGGAGGGGACGCCATCTTGGTCCCAGATCTCCACGTCCCTTTCTCAGCAACATATCACGGCAGTGGTGAAGGCCAAGGGAGGCACCATGGAGGAGCTGCACAGTCTGGACCCCCGGAGACAGGAGCTGCTGGAGGCTCGCTTCATGGGTGCGGTCACTGGCACTGGGGGCAGTACCGGGGGCAGCACAGGCAGCACCAGCGGGGGAACCAAAGGAATGACGAACAATGACTGTTCAAATCAAAGTTTTGGAAGCCTGGGGTCTTCTAGTGACAAAGAGTCAGAGAGCTCCGACGTGAAAAGGGGGAGCTCTCCTGCATATTCGACTCCTGAAAAGAAACACTCTGAATCATCCAGGGGAAGAAAAAGGAAACCTGATATCCAATCAGAGAGCAGCCAAGGGAAGTCTATCGTGCGAGGACCCAAAATTAGTGATTATTTTGATTTCCAAGGAGGGAATGGGTCCAGTCCTGTGAGAGGTCTCCCCCCAGTGATCCGCTCACCCCAGAACTCACATTCCCACACCGCGCAGGTTTCCAGTATTAGGCAAAACAGCTCATCTCCTACGAGTCTGTCTTTTGGGGACCATGTGATGCATCCTAAGCAGCTAGCAGTCAAATGTGTGCAGACTGATCTGACGGGGCTCAAGTTGGCTGCCCTTGAAAGTAACAAGAACCTGGACCTTGAGAAAAAAGAAGGCAGAATAGATGATTTGCTTAGGGCAAACTGTGATCTCAGGAGACAGATAGATGAACAACAGAAATTACTTGAAAAGTACAAAGAACGCTTAAATAAATGCATCACCATGAGCAAGAAGTTGCTCATAGAAAAGAGCACCCAGGAAAAGCAGGCGTGCCGGGAGAAGAGTATGCAAGACAGACTACGGTTAGGCCATTTTACCACTGTACGACATGGAGCCTCCTTCACAGAGCAGTGGACAGATGGCTTTGCCTTCCAAAACCTAGTCAAACAGCAAGAGTGgataaaccaacagagggaggaaatcGAGAAGCAGAGAAAACTCCTAGCAAAGAGGAAACCCCCATCCTCCAGCAACTCCCAAGCACCAACCACAAACTCTGAGCCAAAGCAACGCAAAACCAAGGCAGTGAACGGCGCGGAGAACGATCCCTTTCTCAAGCCCAGCCTACCTCAGCTGTTGACTCTAGCAGAGTACCATGAGCAGGAGGAGATTTACAAACTGCGACTCGGCCATCTCAAAAAGGAAGAAGCTGAAATCCAGGCGGAGTTGGAGCGCCTGGAGAGAGTGCGGAACCTTCACATTCGGGAACTTAAGAGAATAAATAATGAGGACAGTTCACAATTCAAAGACCATCCGACTTTGAACGATAGGTATCTACTCCTGCATCTTCTGGGAAGAGGAGGCTTTAGTGAAGTTTACAAGGCGTTTGACTTGATTGAGCAACGGTATGCTGCTGTGAAAATTCACCAGCTCAACAAGAACTGGCGGGAGGAGAAAAAAGAGAACTATCACAAACACGCCTGTCGAGAGTACAGAATACACAAGCAGCTGGACCACCCCAGAATCGTCAAGCTGTATGACTACTTCTCACTGGACACAGACACGTTTTGCACAGTTTTGGAGTACTGTGAAGGAAATGACCTGGACTTCTACTTGAAGCAGCACAAGCTAATGTCAGAAAAGGAGGCCCGCTCCATTGTCATGCAGATTGTGAATGCTCTCCGATACCTGAACGAAATCAAGCCCCCCATCATCCACTATGACCTCAAGCCAGGTAACATCCTGCTTGTTGATGGCACAGCTTGTGGGGAAATCAAAATCACAGACTTCGGTTTGTCCAAAATCATGGATGACGACAGCTACGGTGCAGATGGCATGGACTTGACCTCACAAGGAGCAGGGACCTACTGGTACTTGCCTCCTGAGTGTTTTGTTGTTGGCAAAGAACCTCCAAAGATCTCCAACAAGGTGGACGTGTGGTCTGTTGGCATCATCTTTTTCCAGTGTTTATATGGAAGAAAACCATTTGGTCACAATCAGTCTCAGCAGGATATCCTGCAGGAGAACACAATTCTTAAAGCAACCGAAGTTCAGTTTCCTGTCAAGCCTGTTGCCAGTAATGAAGCTAAGGCCTTTATAAGGCGATGCTTGGCATACAGGAAGGAGGACCGGTTTGATGTTCACCAGCTGGGAAGGGATTCCTACCTGCTCCCTCACATGAGGAGGTCCAGCTCTTCAGGGAATCTGCAGCTGGGCGCTGGTGGCTCAGGACCTGCCTCCTCCAGCATCATCTCGTACTGAGGGCTGGCTGTGCACTGACTGGCTGCACCACGCCTGCAGAGCCCTCTCTCCCACAGGACCAGGTGTGTGGGAGAGGAGCTGCCTGCCAACCAGCGGTGTATGGAAGGCATTTGGACCCTGTAGACTGAATGGTGTGGAATTTGGCCTTCGCCTGGACTGTTCTGGGTTTCAAATGGGTGTTTACTAAAGACATTAATGAATGGATGTTTAAAAGAACATGAGTAAATTACCTTGTGAAGGTTGAATAGAGCACTGCTACAGACAGTACCTTGAATAAATGTGACTAGACACTTGCTGGTGGAAGCCTTACAGGGCCTAAGGTATACCTGGCAGCCCGCCATTTAGAAGAATGAACATGGTCCTGCTGGGCTGATTTGCCTTCTAGGAGTGGACattcgtgttttttttttttttgtaggtatGCAATGATTTCACCAATTCGGctgtatgttttttattttcagaAAGTGTTGGGTTGTACAATTAGCCATGAGAATGTAATGTTTTATCATATGTGGGGGCTGTCATTTAGGCCCAGGCAGCATACTAATGTTGAATGCACAAAATAACCAAATGTCAATGTACAGAATCCTATGCAGGAAGATTTTAATGAATTTCTTCGAGTACATGTATATTTGCTGTACAGAAGACGATTTTCAGATTTCGAACTGCAGCTGTACCATTCTGTACAaatgtttaaaggcccagtgcagtgttttcccctttgTTTTGTATACACATtaccacactgaggttggaacaatactgtgaaattgtgataaTTATGATGATGccctttagtgtaagagctgtttgacaaGACCACCTGAAATGTTTGCCtgtgtggtgggatggagttttggcctgcctgctGACGTCtccaggcggtaaattagtttatagatcaataagaaagagttccaaacctcacTGCTAATAATAGctcgttttcagttttcccctccccacacaGACCACTATCAATTCTTTGGTTCAGAAATTGCTATGTTTTGTTTATGACCACGTTTTCTATTAAAAATCACAGTAAGGtgattgttacccagaaatgacttgatattgagataaaaatggctgcattggacctttaacaatttcttatttttttccgaTTTGTTTTAAATTTTTGCTGCTTTTGATGTTGCTCTTAATTTTTAGGGCTGTATGTTCCACTCTGGGTACACAATGTACAGTTCTGTAAAAACAATAAATGATGATAAATAACAGGGAATCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304730 lncRNA downstream 10180 49292629 ~ 49292853 (-) True G268208
TU304729 lncRNA downstream 11495 49291044 ~ 49291538 (-) True G268207
TU304727 lncRNA downstream 13541 49289270 ~ 49289492 (-) True G268205
TU304726 lncRNA downstream 16844 49285812 ~ 49286189 (-) True G268204
TU304685 lncRNA downstream 19601 49282309 ~ 49283432 (-) True G268166
TU304750 lncRNA upstream 18509 49350822 ~ 49405204 (-) True G268227
TU304679 lncRNA upstream 25744 49358057 ~ 49359171 (-) True G268160
TU304823 lncRNA upstream 125152 49457465 ~ 49457956 (-) True G268284
TU304825 lncRNA upstream 127286 49459599 ~ 49459807 (-) True G268286
TU304832 lncRNA upstream 133575 49465888 ~ 49466196 (-) True G268293
XM_036974384.1 mRNA downstream 227863 49057963 ~ 49075170 (-) False ccdc173
XM_021597129.2 mRNA downstream 241615 49057043 ~ 49061418 (-) False ccdc173
XR_005047660.1 mRNA downstream 251965 49047704 ~ 49051068 (-) False LOC110520089
XM_036974412.1 mRNA upstream 58180 49390493 ~ 49412478 (-) False LOC110520101
XM_021597151.2 mRNA upstream 58180 49390493 ~ 49412480 (-) False LOC110520101
XM_021597152.2 mRNA upstream 58180 49390493 ~ 49413113 (-) True LOC110520101
XM_021597161.2 mRNA upstream 143665 49475978 ~ 49478117 (-) True dlx2a
XM_036964921.1 mRNA upstream 161688 49494001 ~ 49503025 (-) False LOC118944672
TU302595 other downstream 1269731 48032047 ~ 48033302 (-) True LOC110505248
TU302286 other downstream 1703218 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 3765491 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 4198770 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 4290784 45010172 ~ 45012249 (-) True G262993
TU304852 other upstream 163164 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 170103 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 231535 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 231535 49563848 ~ 49567474 (-) True LOC110520112
TU305027 other upstream 534904 49867217 ~ 49871645 (-) True LOC110520119

Expression Profile