RNA id: XM_021597155.2


Basic Information

Item Value
RNA id XM_021597155.2
length 3446
RNA type mRNA
GC content 0.43
exon number 14
gene id dcaf17
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49357526 ~ 49364818 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTATGACTTGCCTGCTATGAACTTAATGTTGTGCTGTTACGTTAGCACTTTCTATTGAAAAGGATGATGCTACGGAGTTTAGTTGATAGGTAATCGACTAGCTGGGCTGTTCCCCTGACCCCTATGTAGGGACTTGTACAATACTTGAACATGGCTATTGAACTTTATTCTTTAATCTAACATATCATACAGAAACAGTAACCAGGAgcggtatggtgttgatatcttGTATATATCAAAAGAGCAAAAGGAGCGTGCATTGAGGCTCGCAAAGTTATCAACGCAGGAAGTGGACAGCTTTGATTGTCGGAGCAGGGCACCAGTTAAAGGTATTATCTCTGGCGTCCCGTTGGACATTGACAATCAGGAGTAGTTGAATGTAAAATGTTGCAACTGTGACGGGGATCACATTTCCGAATTCCCTGAGTGCCCTGTTAGAGTGAAAGAGGTTGAGGTGTCAAGGATCAGGGCTGTACAGCAAATCTCCTATGTGGAGGCGGTGAAGAGAGTTCTGAATAAGATATTGTATATCTCAATCAAGTGGTCTGGATACACTTATTGTGAAGAAGGTGGATTTTGTACCATCCAAGAAGTCCAAGAAAGCAGACATCATTATATCTGCAGCTGAGAAGTTTTTGGGCCTCCAAGACTTAACCACAGAAGCACTGCAAGGACTATTGTCGCCAGGAAATGTCCAGCCATCacaggatccttctgggcctgtgtagGGACCTGATTAAAACAGAAACGCAGGCTGATTTAGTTTTTAAAAAATTCGTTATTGATAGTTTgtatggaatatatatatatatatatattatttaataaTTACCCCGCATTTTTTCCCTTTCGGATCTTTATTTTCCActtgtacagtaggtggcggaatGCACACGTAATTGTCGCAAAAGCTCTTACACCAAAGAAGAAGGAGGGTGGGGCGGAACACCTACTATGTGAAGTTTAGTAATTCAATTCGCCCTTGACCTCCTAAACGATTTTGTTTTTAAAAATACTTTGGCGAAAGGTAACGTCTACAAAACGCtgtccactctgtttgttacagattctagttttggaaactgaaaactgtatggagatcaaatgtttcatcgttGAGATAATCTGAAGAATTCCGGTCAAAATCCACCTCGCTCTATCGTCTCCCACTGCCGACTGCTGGTCTTtctctcatccccatatttggtagtgagcgGAAACGctaaccggatgcttcacatttatacatccggtgaaatatatGGCTCGTTCTATCTGCGATCACTGTGTATCTGATGCTAAGGACACGTCGTTTTAGCAGTCGTGATAGTTATGACTATTTAATTATCGTGTTCTAAAGGACGAGGTTTGTGTATACGTAGTATTTGGTTGTAAATTAATCATTGACATGGTTGGAAGTATCGAATACCGACGTGGATAACAGTTGAACTGCGCTTGCTTTGTTTTGGACACACTGGTGTTATTGTGTGGAGTGTTCCAGCCCCTGTGCATTGAGCGCCTCCTAGTGATGCCTCAGCTGAGAGGGAAAAATGTTGCAACCTACCTAGACCTGAGATCGAGAGGCATTTTTGATGCTGGCACTTTGTCAAAACTCAACTTGAAGATTCTTAGGGGTCTTGTCCTCCAGGACAGCAAAGACTTCACCAAAGTCTGGACCAAGTCCTCAAAATCCACTATATTTTATGAGAGTGGGAGGATATATTTTGAAAATTATCAGTGTTGCTTCAGTAGCCTTCCATCTGAGCCACAACTTCTGTATGAATTACCCAAGCGGTCCAAAGCGGAGAAGATTGAAGATGCATTGCTATGCCAGTGCCCTCTTGACAAAGGGTTGCCAACACCGTCAGATCAAAAACCTAGCCTCTTGGCCCTGACTAGCAATAATTGGCTGTATCGCTTCTCAGCTGTGACAGGACAACAATTGGAGAAAGTTTACTTGTCCCCACATCACAAGTTCAGATACCTTGGCTGGGATGTATCGCAGGAGACATTTTATGTCAAGTCCATTCAGAATAAAGTGACATCTTCAGCAAGACAGGCAGGTTTCAACCAAAACACCTTGCTGTACCTCGCCGTGTTCCGCGTTTTCCCCCTGCAACTTGTGGGCGTTCTGGAGATCAACAAAAGTATATTTGGAAGCACCGtcattgatgtagttctgtcccaAGGGGTCCTTGCGGTTTCTCACAGTACCAAGACTGTGAAGCTCTACAGCTTTGAAGACATTCTGAATAAGTACATAAGAACGGAATTGGTTCTTGGGGAGCAGTGTCATTCAGAAGGCGGTAAAACTGTGGGAGAAGCTCCATTTGGCATTCCAGTGAATATCCACATCAACGAATGCCCCCCAGTGCTGTTTGAGGTGTCATGCTTTGATAATGGAGTACAGATCGGAGGCCATCCATGGCACTATATCTTCACCCTACCCCATAAGAAGCACCAGGGGTCGTACCGCATCTGCTCTCTCAAGGATAACACCCTGGCAAAGCATGGAATACAAGACATGAAGTGCTGTTCTCTGGAGTCTGACTGGATCTACTTTCACCCTGATGACTCAGGAAGAATCATCCATGTTGGACCTAGCACCATAAATGTGCTGAAGATTCTGAGTGAACTGGAGAGTGATTCACAGTTCGATATAGTGAAGGAGTTTTCCATCACAGCTCATCGAGACAATGCTGCCTCCCAGATCAATGTCACTTCCTCAGGCCGCACAGTGAAGAGAAGATTTTATCAGCTGGATGATGACCCAGACCGAGAGACATTCCGGATGGTGGAGTATGAGGATGAGCTTGACCTTCTAGCTGTTGTGGAGGTGACCcacagagaggatgaggggaaggCCCACGTCAGACTCCATGACAACAACACTGGAGCGTTACTGAAGAGGGTTCCACTTGTGGAGTCATGGGATGTGACTTACAGCCACGAGCTGTTCTTTGACAGAGATACAATTGTTCATATTGAACAGACGAAGAATAACTTCTGCTGCCATGTCTACAAAATCAGTCGTGGACAAGCAGATGAGTGAAGTTGAGACAATCCTTCCAATTGCTAATGATGTTAGTCAAAAAGATTCCTCAAGTAAATAGCCCTGTTGAATGTTTTCCTAGTTATTTTTTATACTTTCTTTCCCAATAAGGACTACATGTTGTCATTCTGTTATTTTGAAGATGTTGTTGGTACTCTAATAAAGTGTCTGAAATAGTTTTTCCAATACAACTGTTGGCTAACTGAGCTACCTCTGCATTTTATATTTTAGGACATATGAATTAAGCCACAACATTTCTAAATGAACTGATGAAAATAGTTGTTCATGTTTGATCATCTGAGAAGAGCTGTGAATTTAGGTTCTCTGATCTTTTTTAACCGCATGTAAGCACATTCCTGccacccaaaaataaaaataaataattgtcaaGA

Function

GO: NA

KEGG:

id description
K23331 DCAF17; DDB1- and CUL4-associated factor 17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303643 lncRNA upstream 55971 49301268 ~ 49301555 (+) True G267235
TU303503 lncRNA upstream 72423 49283571 ~ 49285103 (+) True G267099
TU303625 lncRNA upstream 103312 49253953 ~ 49254214 (+) True G267217
TU303622 lncRNA upstream 106394 49250783 ~ 49251132 (+) True G267214
TU303623 lncRNA upstream 107912 49249433 ~ 49249614 (+) True G267215
TU303728 lncRNA downstream 82707 49447525 ~ 49447786 (+) True G267308
TU303729 lncRNA downstream 83730 49448548 ~ 49448806 (+) True G267309
TU303735 lncRNA downstream 88910 49453728 ~ 49453950 (+) True G267315
TU303744 lncRNA downstream 101055 49465873 ~ 49466114 (+) True G267324
TU303767 lncRNA downstream 130779 49495597 ~ 49495810 (+) True G267347
XM_036974407.1 mRNA upstream 56750 49296162 ~ 49300776 (+) True LOC110520099
XM_021597139.2 mRNA upstream 75562 49266948 ~ 49281964 (+) False gad1a
XM_021597140.2 mRNA upstream 75562 49266948 ~ 49281964 (+) False gad1a
XM_021597141.2 mRNA upstream 75562 49266948 ~ 49281964 (+) True gad1a
XM_021597138.2 mRNA upstream 99893 49255350 ~ 49257633 (+) True LOC110520096
XM_021597156.2 mRNA downstream 1124 49365942 ~ 49368341 (+) True LOC110520104
XM_036974413.1 mRNA downstream 3944 49368762 ~ 49390595 (+) False dync1i2a
XM_036974415.1 mRNA downstream 3959 49368777 ~ 49390595 (+) False dync1i2a
XM_036974414.1 mRNA downstream 4281 49369099 ~ 49390595 (+) True dync1i2a
XM_036974420.1 mRNA downstream 48674 49413492 ~ 49430082 (+) False hat1
TU300304 other upstream 2525282 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other upstream 2525322 46831008 ~ 46832204 (+) True LOC110520046
TU300303 other upstream 2525392 46831008 ~ 46832134 (+) False LOC110520046
TU299995 other upstream 3172722 46184134 ~ 46184804 (+) True G263859
TU299866 other upstream 3278101 46075484 ~ 46079425 (+) True G263733
TU303780 other downstream 145985 49510803 ~ 49512475 (+) True G267358
TU303803 other downstream 189680 49554498 ~ 49555838 (+) True G267381
TU303972 other downstream 471799 49836617 ~ 49855502 (+) True G267529
TU305367 other downstream 797483 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 1237484 50602302 ~ 50604816 (+) True LOC110520146

Expression Profile