RNA id: TCONS_00028929


Basic Information

Item Value
RNA id TCONS_00028929
length 4374
RNA type mRNA
GC content 0.44
exon number 7
gene id XLOC_014637
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 13193215 ~ 13286738 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTCTACGGTGCACCGCTGCGCTCAAACCTCCTGCAACAAAAGCACAACACGCGCTCATCTGCGCTGTCAGTGTGCGCTCGGATCACAGCACAACTTAACCCTCTCCACGACGACACCAATAAACCCTGACTGGAATCAGACAGACACCGAAACACATCCGAGTCTTACAGACAGAGCGTTTATCTGTGTTTGGATGAATCGCGGTATCGTTTTTTAATCTCGAGTCCAGCGCGCGGAGCAGGAATGTCCCGGAGGAAACAGAGCAACCCAAAGCAGTTCAAACGAGTGTTTGAAAATGGGCTTGAGGCGGACTCTGAGGAGACGCTGTGTGAGAAGAAAGAGATTTTAAAAGAAGAAGACCAGTCTGTGGAGGACGACCCAATTTACTTCTCTGACCCAGAGAACGGCATCTCTAAAGATGGAGATCACTCGAGGAACGgtgaaatgggtggAAGTGTTAAGGTGGAGCAACAAGACAGTGACGGACAAGAAGAGAGAGTCCAGTCCAGCCCAGTGACAGCAGAAGAATGGGACGGCCCAAGGGAGTTGAAAATTGTCTGTGAAGGAGAAGAGAGAAAAATTTGTTCTTGTCAGGCCCTTTTACTGGGCACCACGTGGGGACCTTTTCCTGGCAAGATCGAGGCAACCACTGGAGGAAGTGACAAGGTTTCGCTGGTGTTGAATGGAGGTCCTCGCTGGCTGATGGACATCATGTGGGTCAGCGCTGAAGATGGAAAGAGCAACTGTGCTGTTTACAGTAAAGGAGGACATGTGTGGTGTTCCACAACCAAAAACATCATGGAAGGAGATGAGCTCGCAGCCTGTGTGGTGGATTTGCACTCTCATCTTCAAACCCCAGGCCCAAATCCCTATGGTCAAGGGATGTACCCGTCCCGACAGCTGGATGCCATCCAACTCCTTCCTCAGCAAGCGGCCATGGCATCCATACTGCCCGGCGCTATCATCAACAgtctCAAGTCTGATGAGGTGTCCACTGGAAGTAACTTGAAATGCACCATTTGCGACTACTCTGCTGAAACTCTCATGGTGCTCCAGCACCACATCCTCTCCCATCTGTCCCAAACCGGCCTGAGATGCGGTCAATGCCACTTCTCATTCCAAACCCCCAGAGAAATGGCCAAACACCAGGAGCTACATGGACATAATTGTACGGTCACCAATAAACCCATTAAAGAAGACAAAACTGATAACGCTCCTAACAGCATCACAAGTAACTCTCAACAGGTCAGAGCTAAGACGAACATCAATGACCTCCAGGAAAGCACAGCACAATGTGATGTTACTCAAATTTCAGATCTGCAAAACACGGACAGTAGCCAGAAATCCAATAAAGGCGAGGCAAACTCAGGAAACAAGGCCAACCTTTCATATTCCAGAGTCAAGTCAGAACCTTCTAGTCCTCGTTTAGCCTCTTCACCCATTCAGCACCACCTTCCTCCTGCATTTCCCTTACCCCCTTTTATACCGCATGTTCCGTTCTCACAGGATATTACTATGGGGCCGCAGGCATCTGAGATACTGGCCAAAATGTCTGAGTTAGTCCATCGCAGGTTGCGTCATGGTGGAAACTCTTACCCTCCGGTCATGTACAGTGCACTTGTACCAAAAGGAGCAACATGCTTCGAATGCAATATCACCTTCAATAACCTTGATAATTATTTGGTGCACAAGAAGCACTACTGCAACAGTCGTTGGGAAAACACGCACAAATCACATGACTTCTCTGGACTtctggataaaccagcaggcacTGTAAGCCCTAAAATTGGAGCCAGTTTGGCTGTTATGCTAAATGCCGGCCATCCCTCTGAAGTGAAAGGCCAAGAGCCTAAACCTTGCAATCCCATTGCAGGTGGAAAAGTAACAGATGAACTGACCGTTCAAGTTAAAAAAGCATCCACTCCATCTGGTGCACAGGAGAGACCAAATGGTACACAGCTGGATTTACAAAGCCAGAAAATGCCACCCACTGAAACTGACCCCAGCCACACAACATGCGAGGCCTGCAAGATCACCTTTAGTCGACATGAGACCTACATGGTGCACAAGCAGTATTACTGTGCCACTCGCCATGACCCTCAAATCAAACGGGCAAACAATAAAGGACCGGCTAATCAAAAGGCAGTACGTCCACGTAAAAGAAGAAAGGCATACGAGTTGGCCAATTCTGAGCAAGAACAAATGCCACCAATGGGTATGCCATCATTTCTTGGAATGCCCACTTTAGGAGGACCATACATGTCTAAGGACACACTGGATAGCTTCAGAGATCATCAGAGATACAACATGATTCAGGGGTTAGTGCCCAAATACCCAGAGGCTTCACTGACAGTTACGAAATCCGCTCTTGTGTCAAAGTGTAATATAATCTCAAAGGAAGAAACTGATGCACCCATAGATCTCAGTAAAAAATGTGTGCCACAGTTTGGTAACACTCCTGTTTCCCCTAAAGGACTAATGGATTATCATGAGTGTGTTGTGTGCAAGATAAGTTTCAACAAAGTTGAGGACTATCTGAAGCACAAGCAGAACTTCTGCCCGGGTACTATTTTGCAAAGTGCTTCCACTGAGAACAAAAGCATCAAAAAGGAAGTTCCCAGAAATACCAACAACCTCTTAGAGAACCCCCTCTTTGAATTTCCAGCTCCACAGATAAAGACTGAGCATCCAAATGCAGTGCCAACTTCTGATACCCAAGCTTCAAGTGAGGAACAATTAATCCCAACAAAAGATGACCTGAGGAACATGTTTCAAACCTCTTCAACCTACCCAAGTCCTGCTAAGAAAATGAGACCTGATGAGCAAATTTGGCCTTACTATGAAATCAAACCCACCGATTATGCTACAGGGATGCTGGTCTCACAAAGTGAAAGGAGACAGAGTCCAAACGAGGGCAGTGAGGGAGAAAAAGATCAGCCAATGCCTGACGGTAGCCATCTTAGCACAGATGACCCTGAGAACCAGAGCCAGTCCTCATCTCTAAAGGACAATGTTGAGATTGAGGAAAAGATGGAAGATGCTGAAAATAAACATGAATCCCCCACACCAGAGAGCCGTTTAGATGATCCCATCAACAGTAAGGATGTCACCACACAGATGCCATCTATAAAAACTGAGGAAGTCTCGACTAGCTTGAAGAAAGCGTTGACTGGGTCCATTGCCAACTCAAGTAATGTAAAGTACTGTCGCCCGTGTGACATCCAGTTCAACAATCTCTCAAATTTTATAACGCACAAGAAGTTTTACTGCTCATCTCAAACAGCAGAGCATGTCAAATAGTGGACAACTAGTCCACAGTTGTAGAAAATGTAGTGTTGGACTCAATCCACGTACATACTGTCAGCAGTGTAAAGATACATTTAGGGCCTCTTGTCACAGGACCCGAGAAAACATTGCCCGTTGTCCACCCTTGACAACTGCACTGCTCGAATCAGACATAATTTATTGCAATGGACACTTTCTCTAAACAATACCATCTGCCCTCTCGTCTTTCACAAGCCTTGAACCTGTCATTAATTTTCACAAGCACGTTTCTGCCCCCTTGTGGTCATCATAAGACGTTTTTACGATTCCATGCTGGTGTACTCAGCAGCAGGAGGACAATCAAAGCAGGATTAATCCTACCAGTCATTTATTAGAAACTTTGAAACTATTTGTTGAAAATACTGTGTgctgtttcttgtttttttatgtatttatttatttaataatagttGCAGCTCCAAAAAAGATCTGAAGTGAAAGACAAGCTAGTGAACGTTTCAAGATTGTGAAAGCAAGCCACATTGTAGAAACTGATTAAAAAGAAAAGTCTACAGATGGTGGGACTACCACTGGCTGATTATTGTTTATCCTTTGACTGGTATCCTTAAGACTGGCAATCATGTTTTCTGAATTAATAATTGTCGATACATGTAGAGTCTAGTTTGTCCTTGATGTTTCTTTATGCttcaaacctttttttcttgtcaatgcAGAACTCTTCTTAAAAAGGTGacctgtatgtgtgtttgttgatTCCttatctcttttttaaatatctggctTCTAATGCAatactttttaaaagataaatcaTTATTTAAAGCAGTATTACGAAAGGGTAACTTTTTTACTTGGACCCCAGAAATTCTGTGTGAAGTGTTTACGGAGGTCGTACAGAGAAGGGTTTACACTTGATATGAATAACTCACTGTAAACTTTCCTACAGAAAAATAATCTTGtcagaaaaaaagggaaaaaaaaagttgtcaataATGTGTTGCTATGCATGTACCTGTATGGAATGAAATTCCAGAAATGTgggaaatgttattttatgtggcataaaaattaaaattcttaTCTCAGGA

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0001085 RNA polymerase II transcription factor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060130-5 Predicted to enable DNA binding activity; RNA polymerase II-specific DNA-binding transcription factor binding activity; and metal ion binding activity. Predicted to be involved in cell differentiation; heart development; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in anterior lateral plate mesoderm; central nervous system; midbrain; and posterior lateral plate mesoderm. Human ortholog(s) of this gene implicated in 46,XY sex reversal 9; myelodysplastic syndrome; and tetralogy of Fallot. Orthologous to human ZFPM2 (zinc finger protein, FOG family member 2).

Ensembl:

ensembl_id ENSDART00000168296

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030172 lncRNA downstream 4487 13185953 ~ 13188728 (-) True XLOC_014636
TCONS_00030171 lncRNA downstream 183800 12967019 ~ 13009415 (-) True XLOC_014635
TCONS_00030170 lncRNA downstream 184999 12967019 ~ 13008216 (-) False XLOC_014635
TCONS_00030169 lncRNA downstream 569253 12620926 ~ 12623962 (-) True XLOC_014632
TCONS_00028922 lncRNA downstream 788899 12398544 ~ 12404316 (-) False XLOC_014631
TCONS_00028931 lncRNA upstream 77814 13364536 ~ 13365511 (-) False XLOC_014638
TCONS_00028932 lncRNA upstream 77814 13364536 ~ 13366234 (-) False XLOC_014638
TCONS_00030173 lncRNA upstream 78063 13364785 ~ 13370153 (-) False XLOC_014638
TCONS_00030174 lncRNA upstream 78406 13365128 ~ 13370153 (-) True XLOC_014638
TCONS_00030175 lncRNA upstream 166136 13452858 ~ 13456898 (-) False XLOC_014639
TCONS_00028928 mRNA downstream 225229 12957900 ~ 12967986 (-) False XLOC_014635
TCONS_00028927 mRNA downstream 228195 12937066 ~ 12965020 (-) False XLOC_014635
TCONS_00028924 mRNA downstream 544807 12630414 ~ 12648408 (-) False XLOC_014633
TCONS_00028925 mRNA downstream 545093 12632137 ~ 12648122 (-) True XLOC_014633
TCONS_00028923 mRNA downstream 788625 12398553 ~ 12404590 (-) True XLOC_014631
TCONS_00028933 mRNA upstream 352764 13639486 ~ 13733870 (-) False XLOC_014640
TCONS_00028934 mRNA upstream 427847 13714569 ~ 13774502 (-) False XLOC_014640
TCONS_00028936 mRNA upstream 516433 13803155 ~ 13808632 (-) False XLOC_014641
TCONS_00028937 mRNA upstream 516698 13803420 ~ 13808630 (-) True XLOC_014641
TCONS_00028938 mRNA upstream 618346 13905068 ~ 13923091 (-) False XLOC_014642
TCONS_00028926 other downstream 559952 12633149 ~ 12633263 (-) True XLOC_014634
TCONS_00028921 other downstream 800457 12386297 ~ 12392758 (-) True XLOC_014630
TCONS_00028910 other downstream 1047450 12134847 ~ 12145765 (-) True XLOC_014624
TCONS_00028911 other downstream 1056344 12136736 ~ 12136871 (-) True XLOC_014626
TCONS_00028907 other downstream 1062035 12131045 ~ 12131180 (-) True XLOC_014625
TCONS_00028935 other upstream 446446 13733168 ~ 13774469 (-) True XLOC_014640
TCONS_00028954 other upstream 1888121 15174843 ~ 15192646 (-) True XLOC_014651
TCONS_00028962 other upstream 2740697 16027419 ~ 16027490 (-) True XLOC_014658
TCONS_00028963 other upstream 2741734 16028456 ~ 16028590 (-) True XLOC_014659
TCONS_00028964 other upstream 2742586 16029308 ~ 16029443 (-) True XLOC_014660

Expression Profile

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