RNA id: XM_021597161.2


Basic Information

Item Value
RNA id XM_021597161.2
length 1798
RNA type mRNA
GC content 0.42
exon number 3
gene id dlx2a
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49475978 ~ 49478117 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATATACCAGCTCTGCCTCCCACGTGATACTGGATAAATGCCCGCCCGCTAGCATCCTAGGTAACAGACAATCACAGACCACTGTGATAGGGACACACCTTCGTCGTTTTTTGGTGAAGTTCATGGGGATGCCATTTTAAACTCAAAACGAATTTAATCCACGAGATATAAGCATTCATTGCAAATTGACTTTTTCAATTGCATTGCTTCAGGCACATTTAGCTGTGCAACTTTACCTACAAGATGACTGGAGTTTTTGACAGTCTCAGTACAGATATGCATTCGAACCAGATTACCTCGAACAGTTACCACAGCTTGCATAAATCGCAGGAGTCCCCAACTCTACCAGTATCGACTGCAACGGACAGCAGCTTTTACAATAGCCAACAGCCTGGATACTGCGCAGGGTCTCCATATGGCCAACTCGGAACTTACCAGTACCACAACAGTGGTATGAGCAGCGTTCAGTACAATGCTAAATCATACGACCTTGGTTTCAACTCTTATGGCACCTACGGCTCCTACGGTTCCAGTTCTTCACCGACTCCAACGGATGCAGAGAAAGAAGAAAGTGAACCTGAAATCCGAATGGTTAACGGGAAACCAAAGAAGGTCAGGAAACCTCGAACTATTTATTCAAGCTTCCAACTGGCCGCCCTTCAACGGAGATTCCAAAAGACACAGTACTTGGCTTTACCTGAGCGAGCCGAGCTGGCAGCCTCAATGGGCCTTACACAAACCCAGGTGAAAATTTGGTTCCAGAACCGACGCTCCAAGTTCaagaagttgtggaaaaatggagAAATCCCCCATGAGCAACATGTGACCTCCAGCGAGTCTCCCCCCTGTAACTCTCCACCCGCCACTGCCTGGGACTTTCCACAGAATCAAAGAATGAACAATGTAAACTCTAGTTTATCTCAGAGCAGCAGCCCTCCAAATACGACTGAGCCTTCTTTCTTGGCAAACTATTCTTGGTACTCATCAACGAACTCTGCAACACATCTTCAGGCTGGCCCGCTTGTCCAGCACCACCACAACTCCGCCTTGAGCGCTGGGACAATATTTTAATACAACTGACTCTTACTCGGAGAATACTGGTGAAACAGACAAAATGTCATTATACATTTTTACAGACCTCACCAAGCGAACTTTACGCGCAAGTTTGGCCTATAGCTGCTAGGGTAATTCAGAATGACACCGTGCTCGCACCGGCAAAATGGCAGACTACATATTTTTacagttatttttgtatttatttattgtgtttATTTTAATGGATGAGATTTATGAACCACTAATAGCCAAAACAACCACGTAGTAAGATGCTTTTACGAACGTGTGTTACTTTTGAATCAGCGCGAGTCCAAAGTTGATTGCAGGACGTGAACAACTGACACATATGTAGCACAATTTTCAACTGCGTCGTGCATTTTGAAAATTTCCTAATTTTGTTGTACGAGATCCATGTATTAGCCTACATGTACACAGATTTCTATATGGCCTATTCTTTACGGTTGGTTTCCTTTTGTAGGTCAGAATTCGGCTTTGAGAAATATTTCACAACATTATTTTGACATGCCATCCtggcatcatttttttttttattttaatattggGGACCAATGCTGTACCTATTCTTTACGGTTGTTTTATCCTTCATAAACTACTGATTGTCCCCTATTCCAATTAACTTGTATAACATTTCTATGGTGTATTGTCTTTAATTTATTTTATGGTTAGCAGTGTTTTCTTTATATGATCAGACGTTATTTAAATAAAATTATGTTTTCTGTT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K18488 DLX2; homeobox protein DLX2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304841 lncRNA downstream 279 49475335 ~ 49475699 (-) True G268299
TU304832 lncRNA downstream 9782 49465888 ~ 49466196 (-) True G268293
TU304825 lncRNA downstream 16171 49459599 ~ 49459807 (-) True G268286
TU304823 lncRNA downstream 18022 49457465 ~ 49457956 (-) True G268284
TU304750 lncRNA downstream 70774 49350822 ~ 49405204 (-) True G268227
TU304854 lncRNA upstream 19763 49497880 ~ 49498326 (-) True G268312
TU304855 lncRNA upstream 22118 49500235 ~ 49500444 (-) True G268313
TU304859 lncRNA upstream 25910 49504027 ~ 49504226 (-) True G268317
TU304862 lncRNA upstream 32831 49510948 ~ 49511446 (-) True G268320
TU304870 lncRNA upstream 47305 49525422 ~ 49525705 (-) True G268328
XM_021597152.2 mRNA downstream 62865 49390493 ~ 49413113 (-) True LOC110520101
XM_021597151.2 mRNA downstream 63498 49390493 ~ 49412480 (-) False LOC110520101
XM_036974412.1 mRNA downstream 63500 49390493 ~ 49412478 (-) False LOC110520101
XM_036974411.1 mRNA downstream 118530 49303033 ~ 49357448 (-) True LOC110520100
XM_021597148.2 mRNA downstream 143665 49303033 ~ 49332313 (-) False LOC110520100
XM_036964921.1 mRNA upstream 15884 49494001 ~ 49503025 (-) False LOC118944672
XM_021597166.2 mRNA upstream 85724 49563841 ~ 49608114 (-) False LOC110520112
XM_021597167.2 mRNA upstream 85724 49563841 ~ 49608114 (-) False LOC110520112
XM_021597168.2 mRNA upstream 86918 49565035 ~ 49608114 (-) False LOC110520112
XM_021597169.2 mRNA upstream 86918 49565035 ~ 49608114 (-) False LOC110520112
TU302595 other downstream 1442676 48032047 ~ 48033302 (-) True LOC110505248
TU302286 other downstream 1876163 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 3938436 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 4371715 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 4463729 45010172 ~ 45012249 (-) True G262993
TU304852 other upstream 17360 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 24299 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 85731 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 85731 49563848 ~ 49567474 (-) True LOC110520112
TU305027 other upstream 389100 49867217 ~ 49871645 (-) True LOC110520119

Expression Profile