RNA id: XM_021597162.2


Basic Information

Item Value
RNA id XM_021597162.2
length 5024
RNA type mRNA
GC content 0.44
exon number 25
gene id itga6a
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49529978 ~ 49557537 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgatttaaacataaccctaaccttaacttctaatcgtaaccacactgctaattctaaacctaactctaaccttaaattaaaagcaaaaagcagattttttttttgttttcaagAATGTTTACCATAGCCAATTTAGACTTTGTCGATGTGTTAACTAGTGACAACCAAGCAGAGGAGGGAGGGGCGCTGTACTACACGAACTTTATCCATAACCCCGGGAAAACAACAGAACCATTCAGCAGAGAATCCTGAGCGAGGTGTAGTGGAACGTGGAGACAGCGGCACAACATTGGACTATAGTGGTACCATTTGCTTCTAGCGCAATGGTTCTCCCAATAAGATATATTCCAATTCATGTGGCACTTTTTTGTTTGCTAGAATGGACTCCTATATCAGCCTTCAACCTGGATACCTTGAATGTCCTGAGGAAAGACGGGGAACCGGGCAGTTTATTTGGATTCTCTCTAGCCATGCACCGGCAACTTATTCCTTCAGATAAGAGAATACTGTTGATTGGAGCACCAAGAGCCAAAGCTCTGGCCAACCAGAGAGCCAACATAACCGGAGGCCTGTACAGTTGTGACATCACCACAGAATCCGATGACTGTGATCGCATCGATTTTGACAATGAAGAGGATGTGAGAGTTGAGAACAAGGAGAACCAGTGGATGGGGGTGACAGTTAACAGCCAGGGCCCCGGAGGGAAGATTGTGACCTGTGCTCATCGCTACCAGAGACGTCTGTTTGTGGACACTGCTCAGGAGTCCCGTGACATCACAGGCCGCTGCTACGTCCTGAGTCAGGACCTCACTATTGATACGTCCTCTGATGAAGACGGAGGGAACTGGAAGTTCTGTGAGGGACGTGCCAGAGGCCATGAGAGGTTTGGCTCATGCCAGCAGGGTCTTGCTGCCACATTCACCAAGGACTACCATTACGTGGTGTTTGGAGCGCCTGGCGCCTACAACTGGAAAGGCATTGTACGTGTAGAGCAAAAGAACAACACTTTGTTGGAAAAGGGATTTTATGATGACGGACCTTATGAAGTTGGAGATGAGAACCGCTTGGATCCTGACCTGGTGCCTGTGCCTGCTAACAGCTACCTAGGATTTTCCCTTGATTCTGGCTTTAGCATCACCAAGGGGCATGGCCTAACTATTGTGTCTGGAGCACCACGAGCCAATCACTGTGGGGCTGTGGTCCTGTTGCGAAAAGAGAATGAAGCGTCAGCAAGACTCTCCCCAGAGTACATTCTAGAAGGGCCTGGACTGGCATCGTCTTTTGGATATGATGTAGCTGTGGTCGACCTGAATGGAGATGGGTGGCAGGATATTGTTGTGGGAGCCCCTCAGTTCTTCATGAAAGAGGGAGACATTGGAGGAGCTGTTTATGTCTACATCAACCAGGCAGGAAAGTGGGCCAAGATCACCCCAATCCGCCTCAATGGAACCAAAGACTCAATGTTTGGGCTGGCAGTGGAGAACATCGGTGACATCAATCAGGACTCCTATCAAGACATTGCTGTTGGAGCGCCCTACGCTGACGCTGGTGCAGGAAAAGTGTACATTTACCATGGTTCTGCTAATGGAATCAACACCATGCCTGCACAGATCCTTGAGGGAAAGCCCAACAACATCAGATTATTTGGATATTCTCTGGCTGGGAACATGGACTTAGATAAGAATTCCTATCCTGATATAGCCATTGGGTCGCTCTCAGATACAGTACTCGTTTACAGggcaAGGCCAATTATTAGTATCAAGAAGGATGTCAAAATTACTCCGAAGGAAATTGACTTCACAAAGAAAACCTGTGGCAACAGTATCTGTTTGACCGTGGAAGCATGCTTCACCTATAAAGCAAACCCTGCATCCTACAGCCCAAAACTAACTATCCGCTATGCATTTGAGGCTGAAGCAGATCGCAGGAAGCAAGGGCTGATCTCTAGGGTCCTGTTTCTGAACAAGTCTCGCACCGACCAGGACTTCCAGTCCACCGGATTTCTGGACCTCCGGGGACAAAACAAAAGAGCGTGTACCAAGACAAAAATCAGACTGCAGgATAACATTAGGGACAAGCTGCGTGGTATTCCCATTGAGGTGTCAGTGGGAATCCAGGGTACCAAGCGTCAGAAGAGGCAGAACGCTCTCCCCCAGCTTGTGCCTATTCTTGACCACTCCCAGCCAAGCAAGGTCGTCACTGAGGTTAACTTCTTAAAGGAAGGATGTGGAACTGATAATATTTGCCAGAGTAATTTACAACTGGAGTACAGATTCTGCTCCAAAGAGCCCAACCAAGAGGTGTTCCCCCCGTTACAGATGCAGAATGGGCTACCAGTGATCTCCCTCAGTGATCAGAAGGACATAGCTCTGGAGGTGACAGTGAAGAACAGAAATGGGGATGATGCCCATGAGGCTAAGCTGGTGGGGATGTTCCCTAATGCTCTCTCATTCTCCGGCTTTCGCTCTCAGAAAACTACGAGGGATAAACCGGTGCTTTGTTTAGCCAATCAGAATGGCTCCCAGACAGAGTGTGAACTGGGGAATCCATTCAAAAGAGATTCAGAGGTTACTTTCTACATAATCTTGAGCACTGCTGGTATCTCTCTCAATACCACCGAAATCGACATTGACCTTGAGCTTCAAACGACCAGTACACAGGAAAGAACGGGCAGTCTGAAAGCAAGGGCAAAAGTAGTGATTGAGATGTTACTTTCTGTTGCAGGAGTTGCGAGACCTTCCCAGGTGTATTTTGGGGGCGATGTGCAAGGAGAGAGTGCCATCAAGACAGAAGAGGAGATCGGCAGTTTGATCGATTATGAATTTAGGATAATCAATTTGGGTAAGCCGTTGAAGTCCTTTGGCACAGCCTCGTTGAACATTCAGTGGCCCAAAGAGAATGTGGATGGGAAGTGGCTGTTATATCTGGTTAAGATCAGCACCACTGGCCTGGAAGAGATCCCCTGCTCCCCAGAAACTGAGATCAACTCTCTCAAACACATTCAGgagtcTAGCACATCTAGGAAAAAGCGTGAAGCTGGAGGCAAAACATCTGGAGGCAAAATCTCTTTGGTATCAGACCAAAGAAAGCACAAGATTTTGATGTGTGGCAATGGCTATGACTCTAGATGTGTGGTGATCAAGTGCCCTCTACTGGGCTTGGACAGTAGTGCAGTGATTTCTCTAAGGTCCCGTCTGTGGAATGCTACCTTCCTTGAGAATTACGCGTCTTTGAACTATCTTGATATAATTGTGAAAGCTTCCATCAGCCTTGATGCTCCTGCAAAGAATATGGTCCTCAGGAATGCTGAGACTCAGGTGAGAGTCACAGTGTTTCCGGAGAAGGCAGTAGCCCAGTTTGGTGGAGTCCCATGGTGGATCATCCTCGTGGCTGTCCTGGCTGGTATTCTGATGTTGGCGTTGCTAGTGTTTCTACTCTGGAAGTGTGGATTTTTCAAACGCTCAAAGCATGATGACAGCGTTCCAAGATACCATGCCGTACGGATCAAGAAGGAGGCTTGTCAGTTTAAAGACGGAAAAGCCAAGCTGGATTCCTTTGAGAAAAAGCAGTGGATGACAAGCTGGAATGAGAACGAGAGCTACTCATGAGACACTTGACTGTTGGGATACGGTCAGATACAATATCCTATTTTTCTAAACATCCAATGACTGCATTTTGGGAAGCAAACTACAAAATAAACGTTTTCTATTCTCCCCAAGGACTCTCAGATGGAAATCTATCCTGTGTTGCATCTGAGGAAATTAGAAGCATCGCGTCTTACATTTGGGTAGAAAAAGGAAATTGGGACTTTGAAATCCATTATCTGCCACTGATAAATTTTTTTAATGACATGATGAATTGAGTTTCAATCTCCAATGTTTAGCTGTAGATAATCTTTCTGCTGTGTTCTTTTGCAGTCAGTTTTATCCAATCTCCATATTGTATAATCCCTGCAATGAATTGACTGGaacattctgtatgttttgtatATATTTAAATACTTTAGCacactgtatatttatttttgtcattatctgtataaaaaaaaaacagatatgcATTGGCCAAagtctttttacatttttttttatcccaaGTTACTTTTCAGTATAATAAGTAAGGGTAAATGGTACTGCTGATTTTCTAGTGCTGCACAGACTTAAAAGTAGCTACAGGTATTATGTGAATAATATTGTAATTGGGACTCATTCTTTGCACTTTGATTATTCAAAAAAAGGTATGTCATTTCTACACAAGTCAAACAGGTACAAAGTTTATGCAATGCCTCTCAATTCCCGAATTAGAAAAGAATAGCACCTTTATGAATATTTCTAAGACAGTTATGTCAGTTATGAGTTTGAGATATTTAACTGATTCCCACCAAACCTCTGTTTATCCAATACAGTGCCCCTGTCAAAGCCATTTCATATACGCAAATACTGTACTGGGTGATACTTCAGTAGCATGCAGCTGGGAAAACTGGAGCTTGAAAGAAGCAGTAAAATGCAGTTTATTGTTTCGCTAATTTTATTTGAGCATTCCTGAGTAAGAAGGAAGGCACTCAGTAATGGTATTTGTTATGTGTGTCTTGAAGGTTGAGATGCCACCTGACATAAGAATCATAATACAAACCCCCAAAATGCCGACTTCGGAAAGTGATCTTCTTGATGAATGCTGTCTGTAGGCCTAACAGACTTCATTTGATACGGAAGCTATTCAAAGGGTAATTGCTGTGGAATGGTGATCAATGAGAAGCATTAGGTGCTTTCACACTGCACCTTAGCTCAGGGTTAACAAATGTTTGTGTGAACACCGACTAAGCTAGCCCAGGGCCAGTCTAGCCTGGGGCTAAGAACAATGCAGTGTGAAAAGGCCTATTTTGTACTAGGCCTACCTAAAACAtgctttgaagaaaaaaaaaatgtaagtctcATCACTGGCTCGTCATTCATTCCTCTAGTCAGATGTTTTGAAtactgtgttttgtgacaaattgcaataaaaacagaataaatggctcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303787 lncRNA upstream 2673 49527043 ~ 49527306 (+) True G267365
TU303775 lncRNA upstream 26842 49502717 ~ 49503137 (+) True G267353
TU303774 lncRNA upstream 27281 49502496 ~ 49502698 (+) True G267352
TU303773 lncRNA upstream 28285 49500808 ~ 49501694 (+) True G267351
TU303769 lncRNA upstream 31653 49497927 ~ 49498326 (+) True G267349
TU303807 lncRNA downstream 6351 49563888 ~ 49565192 (+) True G267385
TU303838 lncRNA downstream 53538 49611075 ~ 49611419 (+) True G267416
TU303852 lncRNA downstream 57047 49614584 ~ 49614845 (+) True G267427
TU303899 lncRNA downstream 186936 49744473 ~ 49747702 (+) True G267471
TU303932 lncRNA downstream 234218 49791755 ~ 49794631 (+) True G267503
XM_021597160.2 mRNA upstream 59233 49464651 ~ 49470746 (+) False dlx1a
XM_036974421.1 mRNA upstream 59233 49464651 ~ 49470746 (+) False dlx1a
XM_036974423.1 mRNA upstream 59233 49464651 ~ 49470746 (+) True dlx1a
XM_021597158.2 mRNA upstream 99897 49416164 ~ 49430082 (+) False hat1
XM_021597164.2 mRNA downstream 2548 49560085 ~ 49563837 (+) True pdk1
XM_036974425.1 mRNA downstream 71709 49629246 ~ 49676777 (+) False LOC110520113
XM_036974429.1 mRNA downstream 71709 49629246 ~ 49676777 (+) False LOC110520113
XM_036974430.1 mRNA downstream 71709 49629246 ~ 49676777 (+) False LOC110520113
XM_036974431.1 mRNA downstream 71709 49629246 ~ 49676777 (+) False LOC110520113
TU303780 other upstream 17504 49510803 ~ 49512475 (+) True G267358
TU300304 other upstream 2697735 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other upstream 2697775 46831008 ~ 46832204 (+) True LOC110520046
TU300303 other upstream 2697845 46831008 ~ 46832134 (+) False LOC110520046
TU299995 other upstream 3345175 46184134 ~ 46184804 (+) True G263859
TU303972 other downstream 279080 49836617 ~ 49855502 (+) True G267529
TU305367 other downstream 604764 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 1044765 50602302 ~ 50604816 (+) True LOC110520146
TU305958 other downstream 1341052 50898589 ~ 50900277 (+) True G269291
TU307177 other downstream 2016443 51573980 ~ 51578683 (+) False LOC110520169

Expression Profile