RNA id: XM_036974424.1


Basic Information

Item Value
RNA id XM_036974424.1
length 4066
RNA type mRNA
GC content 0.43
exon number 21
gene id itga6a
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49529978 ~ 49557537 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATTGTGGGAATCATGTGTTTTGTGTGCTTAGGTATCCTGTTCATGACCAGTTTGTCTGCTGCCAACCCTGATCAGTTTGTGTATAAGTCGCCTTCTCTGCAGGTCAGCTTTGAGAGAACTCTAGATGTGACGACCAATACTTACTTAGGATTTTCCCTTGATTCTGGCTTTAGCATCACCAAGGGGCATGGCCTAACTATTGTGTCTGGAGCACCACGAGCCAATCACTGTGGGGCTGTGGTCCTGTTGCGAAAAGAGAATGAAGCGTCAGCAAGACTCTCCCCAGAGTACATTCTAGAAGGGCCTGGACTGGCATCGTCTTTTGGATATGATGTAGCTGTGGTCGACCTGAATGGAGATGGGTGGCAGGATATTGTTGTGGGAGCCCCTCAGTTCTTCATGAAAGAGGGAGACATTGGAGGAGCTGTTTATGTCTACATCAACCAGGCAGGAAAGTGGGCCAAGATCACCCCAATCCGCCTCAATGGAACCAAAGACTCAATGTTTGGGCTGGCAGTGGAGAACATCGGTGACATCAATCAGGACTCCTATCAAGACATTGCTGTTGGAGCGCCCTACGCTGACGCTGGTGCAGGAAAAGTGTACATTTACCATGGTTCTGCTAATGGAATCAACACCATGCCTGCACAGATCCTTGAGGGAAAGCCCAACAACATCAGATTATTTGGATATTCTCTGGCTGGGAACATGGACTTAGATAAGAATTCCTATCCTGATATAGCCATTGGGTCGCTCTCAGATACAGTACTCGTTTACAGggcaAGGCCAATTATTAGTATCAAGAAGGATGTCAAAATTACTCCGAAGGAAATTGACTTCACAAAGAAAACCTGTGGCAACAGTATCTGTTTGACCGTGGAAGCATGCTTCACCTATAAAGCAAACCCTGCATCCTACAGCCCAAAACTAACTATCCGCTATGCATTTGAGGCTGAAGCAGATCGCAGGAAGCAAGGGCTGATCTCTAGGGTCCTGTTTCTGAACAAGTCTCGCACCGACCAGGACTTCCAGTCCACCGGATTTCTGGACCTCCGGGGACAAAACAAAAGAGCGTGTACCAAGACAAAAATCAGACTGCAGgATAACATTAGGGACAAGCTGCGTGGTATTCCCATTGAGGTGTCAGTGGGAATCCAGGGTACCAAGCGTCAGAAGAGGCAGAACGCTCTCCCCCAGCTTGTGCCTATTCTTGACCACTCCCAGCCAAGCAAGGTCGTCACTGAGGTTAACTTCTTAAAGGAAGGATGTGGAACTGATAATATTTGCCAGAGTAATTTACAACTGGAGTACAGATTCTGCTCCAAAGAGCCCAACCAAGAGGTGTTCCCCCCGTTACAGATGCAGAATGGGCTACCAGTGATCTCCCTCAGTGATCAGAAGGACATAGCTCTGGAGGTGACAGTGAAGAACAGAAATGGGGATGATGCCCATGAGGCTAAGCTGGTGGGGATGTTCCCTAATGCTCTCTCATTCTCCGGCTTTCGCTCTCAGAAAACTACGAGGGATAAACCGGTGCTTTGTTTAGCCAATCAGAATGGCTCCCAGACAGAGTGTGAACTGGGGAATCCATTCAAAAGAGATTCAGAGGTTACTTTCTACATAATCTTGAGCACTGCTGGTATCTCTCTCAATACCACCGAAATCGACATTGACCTTGAGCTTCAAACGACCAGTACACAGGAAAGAACGGGCAGTCTGAAAGCAAGGGCAAAAGTAGTGATTGAGATGTTACTTTCTGTTGCAGGAGTTGCGAGACCTTCCCAGGTGTATTTTGGGGGCGATGTGCAAGGAGAGAGTGCCATCAAGACAGAAGAGGAGATCGGCAGTTTGATCGATTATGAATTTAGGATAATCAATTTGGGTAAGCCGTTGAAGTCCTTTGGCACAGCCTCGTTGAACATTCAGTGGCCCAAAGAGAATGTGGATGGGAAGTGGCTGTTATATCTGGTTAAGATCAGCACCACTGGCCTGGAAGAGATCCCCTGCTCCCCAGAAACTGAGATCAACTCTCTCAAACACATTCAGgagtcTAGCACATCTAGGAAAAAGCGTGAAGCTGGAGGCAAAACATCTGGAGGCAAAATCTCTTTGGTATCAGACCAAAGAAAGCACAAGATTTTGATGTGTGGCAATGGCTATGACTCTAGATGTGTGGTGATCAAGTGCCCTCTACTGGGCTTGGACAGTAGTGCAGTGATTTCTCTAAGGTCCCGTCTGTGGAATGCTACCTTCCTTGAGAATTACGCGTCTTTGAACTATCTTGATATAATTGTGAAAGCTTCCATCAGCCTTGATGCTCCTGCAAAGAATATGGTCCTCAGGAATGCTGAGACTCAGGTGAGAGTCACAGTGTTTCCGGAGAAGGCAGTAGCCCAGTTTGGTGGAGTCCCATGGTGGATCATCCTCGTGGCTGTCCTGGCTGGTATTCTGATGTTGGCGTTGCTAGTGTTTCTACTCTGGAAGTGTGGATTTTTCAAACGCTCAAAGCATGATGACAGCGTTCCAAGATACCATGCCGTACGGATCAAGAAGGAGGCTTGTCAGTTTAAAGACGGAAAAGCCAAGCTGGATTCCTTTGAGAAAAAGCAGTGGATGACAAGCTGGAATGAGAACGAGAGCTACTCATGAGACACTTGACTGTTGGGATACGGTCAGATACAATATCCTATTTTTCTAAACATCCAATGACTGCATTTTGGGAAGCAAACTACAAAATAAACGTTTTCTATTCTCCCCAAGGACTCTCAGATGGAAATCTATCCTGTGTTGCATCTGAGGAAATTAGAAGCATCGCGTCTTACATTTGGGTAGAAAAAGGAAATTGGGACTTTGAAATCCATTATCTGCCACTGATAAATTTTTTTAATGACATGATGAATTGAGTTTCAATCTCCAATGTTTAGCTGTAGATAATCTTTCTGCTGTGTTCTTTTGCAGTCAGTTTTATCCAATCTCCATATTGTATAATCCCTGCAATGAATTGACTGGaacattctgtatgttttgtatATATTTAAATACTTTAGCacactgtatatttatttttgtcattatctgtataaaaaaaaaacagatatgcATTGGCCAAagtctttttacatttttttttatcccaaGTTACTTTTCAGTATAATAAGTAAGGGTAAATGGTACTGCTGATTTTCTAGTGCTGCACAGACTTAAAAGTAGCTACAGGTATTATGTGAATAATATTGTAATTGGGACTCATTCTTTGCACTTTGATTATTCAAAAAAAGGTATGTCATTTCTACACAAGTCAAACAGGTACAAAGTTTATGCAATGCCTCTCAATTCCCGAATTAGAAAAGAATAGCACCTTTATGAATATTTCTAAGACAGTTATGTCAGTTATGAGTTTGAGATATTTAACTGATTCCCACCAAACCTCTGTTTATCCAATACAGTGCCCCTGTCAAAGCCATTTCATATACGCAAATACTGTACTGGGTGATACTTCAGTAGCATGCAGCTGGGAAAACTGGAGCTTGAAAGAAGCAGTAAAATGCAGTTTATTGTTTCGCTAATTTTATTTGAGCATTCCTGAGTAAGAAGGAAGGCACTCAGTAATGGTATTTGTTATGTGTGTCTTGAAGGTTGAGATGCCACCTGACATAAGAATCATAATACAAACCCCCAAAATGCCGACTTCGGAAAGTGATCTTCTTGATGAATGCTGTCTGTAGGCCTAACAGACTTCATTTGATACGGAAGCTATTCAAAGGGTAATTGCTGTGGAATGGTGATCAATGAGAAGCATTAGGTGCTTTCACACTGCACCTTAGCTCAGGGTTAACAAATGTTTGTGTGAACACCGACTAAGCTAGCCCAGGGCCAGTCTAGCCTGGGGCTAAGAACAATGCAGTGTGAAAAGGCCTATTTTGTACTAGGCCTACCTAAAACAtgctttgaagaaaaaaaaaatgtaagtctcATCACTGGCTCGTCATTCATTCCTCTAGTCAGATGTTTTGAAtactgtgttttgtgacaaattgcaataaaaacagaataaatggctcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303799 lncRNA upstream 5855 49539848 ~ 49540334 (+) True G267377
TU303797 lncRNA upstream 6910 49538890 ~ 49539279 (+) True G267375
TU303796 lncRNA upstream 8242 49537493 ~ 49537947 (+) True G267374
TU303794 lncRNA upstream 9675 49536313 ~ 49536514 (+) True G267372
TU303787 lncRNA upstream 18883 49527043 ~ 49527306 (+) True G267365
TU303807 lncRNA downstream 6351 49563888 ~ 49565192 (+) True G267385
TU303838 lncRNA downstream 53538 49611075 ~ 49611419 (+) True G267416
TU303852 lncRNA downstream 57047 49614584 ~ 49614845 (+) True G267427
TU303899 lncRNA downstream 186936 49744473 ~ 49747702 (+) True G267471
TU303932 lncRNA downstream 234218 49791755 ~ 49794631 (+) True G267503
XM_021597160.2 mRNA upstream 75443 49464651 ~ 49470746 (+) False dlx1a
XM_036974421.1 mRNA upstream 75443 49464651 ~ 49470746 (+) False dlx1a
XM_036974423.1 mRNA upstream 75443 49464651 ~ 49470746 (+) True dlx1a
XM_021597158.2 mRNA upstream 116107 49416164 ~ 49430082 (+) False hat1
XM_021597164.2 mRNA downstream 2548 49560085 ~ 49563837 (+) True pdk1
XM_036974425.1 mRNA downstream 71709 49629246 ~ 49676777 (+) False LOC110520113
XM_036974429.1 mRNA downstream 71709 49629246 ~ 49676777 (+) False LOC110520113
XM_036974430.1 mRNA downstream 71709 49629246 ~ 49676777 (+) False LOC110520113
XM_036974431.1 mRNA downstream 71709 49629246 ~ 49676777 (+) False LOC110520113
TU303780 other upstream 33714 49510803 ~ 49512475 (+) True G267358
TU300304 other upstream 2713945 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other upstream 2713985 46831008 ~ 46832204 (+) True LOC110520046
TU300303 other upstream 2714055 46831008 ~ 46832134 (+) False LOC110520046
TU299995 other upstream 3361385 46184134 ~ 46184804 (+) True G263859
TU303972 other downstream 279080 49836617 ~ 49855502 (+) True G267529
TU305367 other downstream 604764 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 1044765 50602302 ~ 50604816 (+) True LOC110520146
TU305958 other downstream 1341052 50898589 ~ 50900277 (+) True G269291
TU307177 other downstream 2016443 51573980 ~ 51578683 (+) False LOC110520169

Expression Profile