RNA id: XM_021597169.2


Basic Information

Item Value
RNA id XM_021597169.2
length 4447
RNA type mRNA
GC content 0.53
exon number 18
gene id LOC110520112
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49563841 ~ 49608114 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGAGGGCGAGGGTACGTACGCGCGGAAGCGCGATTTGTCTGTATCTGGAGTACAAGGAAGGAGGAAAACTGGAAAGGGGAGTGATGGCGGTAACGAAATGACAAGTTCGGGAGTATAAATTACACAAGAGTTGCATTATGAGGAGCCTTCAGCACCTAGGATGAAGAAACAAGTATCGTAAGAGATGACCACCACATTACGCATGATTTAGACTCCCTGACCAAGACGCCGAATAATCTGTGGGATCCATGGCACTGGTCGACTGAGAACAACAATAGGGGAACAAGAAACACTCAAAAGTTTAACTTCTATCGCCTCTTCCCAAGATACTCCCAGTAAATATTTGAAAATGATAAAAGCCGAGAGCAAAGGAGAAAGGGCGCTGAGGAGTGCGTCCCCGCATAGAAATGCTTACAAGTCGGACTTCCACGCTATTAAGTGTACTTTTGATGGGACGAAATCGGACGGTGCTGCAAAGTCATATGCAAATGGCTCTAACGACACACAGGAGGACACGAGGGGGAGGCATTTAGGCAATCGGATAAACAAGATAAAGAATATTTTCCTCCAGATGGATGGCCAGCAACAAGAGATTCAAGAGGTGAAAACAACTTTGAAAGCTGATTTGTCCCTGGTCTCCCCACCAAATGTGCCATTTGCAGTCACCACACACAAAACAAGTTTGAGCTGTGCCACTAGCCCAGAATCTCCAAGTCTAGACAAAACCCCCAAGGGAGAAGATGTCGAAGTTGACAAAACAGCTTTGGCAGAGAAGTTCTCTTCGACCAGGAAACTCTTTGAGAAGACTATCAAAGAACAACCCGCAGCGGAGAAGTCTCCCAACAGAGTTGTAAGCCGGGTGCCCCTGGGCAGTGTGTCTGATGGGGGGAAAAGTACCAGGAGATTGTCAGGGTCCACTGAAACTAGCAACATCAAAACAGAGCCTGGTCCCACTCCAGTGACGAGAAGCCAGCCAGATGAGAGGAGCGATACTGAGGAGACTAAACATGTGTCCAGGGTGTCACTGAAAGCTGGACCCATGTCCAGACGGCTAGACAACTTCATTGTGGACAGTGACAACGAGGCAAAAGCCACAGAGATGTTGTCTAAAGTACGCAGTCTCTCAGATCGCTCAATGCCTACATCTCCGACAAGGGACAGTTTTAACAAATCCACCATTCCAACAAATGATGCCACTAACAAACCTACCTCCATAGTTACCGGTGTCATTCTCAAACCAACTTCCCCATTCAATAACACTACTCACAAAACATTCCcaacaacagccaatgccactcCAAAGCCCATCTCCCCAGAGCCCGTATCCCCAGGTGGCCAAAGCGCTTACAAGCGCTCCCCTTCAACCAGTGACGGTTTCAGTAGACCATCTGTGGGTAGCGATGGAGTAAAatcctccagtccaccccccaggGATCAAAAACAGCCTACTGTGTTTGCCAATAGCTTTTACAGTAGCAACAGGGCCAAAACCTCCAACAGTGCCAAGAGTGATGGGCATGTGGCACGGAGTCCCACCAGGGAAAAGCCACCTACCCAGGCCTCGTCTCTGCCTGGCATGGTCCGGGCTGAGCTCGTAGTGGTACAGAATGAGTCATCAGAGAGCGAGGAGAACGAAGGGGATAATATTGAAGACGATGTTTTTGAGGAAGTGCATGTTCAACCCCCAAAAGAGATCAAAGTTGAGCTAAAAGAATCGCCACCAAAGGCGATCAGTCAGAAGGATGACCACCATCAGCCGATCTCAGAGAAAGATGACGGCAAGGAGACTACACTGGAGAAGGAAGAAGGAAGTCGATTTGAGGAGTCACGGCATGAAttgaaagaggagtggagagaagacACGAATCCTGTAAATCAAACCGCGGATTACGAGGAGGAAAATGCGGAGGAGGAGGTTGCTGAGGAGGAACAGGGCAGAAGGGGCAAGATTTCCCCAGTGGCATATGGTAGAGAGAACACAGCATTTGTGGATGATGGGGATACTGACCAGACCCTCGAGGAGGAGAATGAAGAGCAGCTCTGTGAGGAGGAGTATGAGGAGGCCCCTGGGCTTTCAGATGATGAGGAGGAACCGGAACCACTGAGGAAGATCAAGTTTTCAACGTCACCGATACGGGTGTTCAGCACCTACTCTAACGAGGATTACGACCGGCGCAACGATGAGGTGGACCCCGTGGCGGCGTCGGCTGAGTACGAGCTGGAGAAGAGGGTGGAGAAGATGGACGTGTTCCCTGTGGAAATTGAAAAGGGAGACAACGGCCTGGGCATCAGTATCATAGGGATGGGAGTGGGAGCTGACCAGGGCCTGGAGAAACTAGGAATCTTTGTGAAGACCATATCTGAGCGTGGAGCAGCTGAACGGGATGGCAGAATCCAGGTGAATGACCAGATAGTGGAGGTGGATGGGATCAGTCTGGTAGGAGTGACCCAGCTGTTTGCTGCTACAGTTCTGAAGAACACTAAAGGAAGAGTCAGCTTTCTGATTGGCCGGGAGAAGCCGGGGACACAGAGCGAGGTGGCACGTTTGATCAGTGAGACCCTGGAGCAAGAGAAGAGCGAGCAGCAGCACCTGGACGACCCCTATGAACAGTCCACTGAGGAGGAGGAGCActatgaggaagaggagggagaggagggaggtatccTAGGGTCTAGTTTCTCCGGCGGAAGGACAGTGGAGGTGTTTGACCTGCCGAAGACCGAGGCCATGTTCATGCCCTCCAACGTGGACTCCAAACAGATGGGCTTCAAATTCAAGGAGCTCCAGCTGAAACACAACACAGCAACAGCTGAAATAAACCAACTGAAGGAAAAGCTACGGGTGTCTGAGGAGGACAAAGCATCCAGGGAGTCCATGGAGGTTGAGTTGGAGCAGAAGATTGAGGAGAATAACGAGAAGATGTTGAAGCTGGAGAAGTACTGGCTGGAGGCCCAGGCTCTGTGTAAAACTGTCAACAAGCAACTGTCGGAGACCCAGAGCCAGTACGGGACGCTGGACAAGAAATACAACAAGGCCAAGAAACTGCTCAAAGACTACCAGCAGAAGGAGATTGACTTtgtgaagaaggaggaggagatgaggaaagtTCTAGACGAGAAGGATCGATGGTACAAGGGGCAGCTTGAAAGCCTGCAGGACAGGATAGCGGTCCTGGAGGGCAGTGGTCCACCTTCTGTCCGTGAAGAGACCCAGGCGGGTCAGGACTCTGCTGTGGAGAGGAGACGGAGCAGCCAGGGGAGTGAAGGCCCTCTCATCAACACACAGTCAGTGGACTCTCTAGCGCTAGATACAGACTGGAGCGAGCTGGTTCCGGAGACTGAGCGCTTGGACACCAGTGCACACAAAGCCAAGTGCCTACTGGCCCCAAGGAGGAATCGTCCGTCTCGCAACAAACGGAAGGAGAACCTCATGTCCCCTTGCCACTCACAGgagaacgaggaggaggaggaggactctGCCAGCAGGAAGAGGTGCATCCAGGAGAGCCTGTCCCTGCCCGGGCCCATCTGCTGTCCTAGGAACGGCCAGAGGGACGACACCCCCGAGGCTGCGGAGAGGTCCAGGAGCAAGTTGAAGCTCTCCAGCAGCCCCTCCCTGCCCCCGTCCCAGAGAGATAGTGTCGAAAGCGGGGGCAGTCCTTCCCTGTCCCCGCCGAAAGACACCTCTTCGCCCTCGCCACACTCCCCTTCAGGGTTCCTTCGCAACGTCAAGAAGAGGGAGTCCAAGGGGAAGGGCAAGGAGCTCAAAGATGAGACAAATGAGAGTTCTTCTGTCGGAAAACCCAAAAAGACAATTTTTGGTGGCCTTCGGAAGTCTGGTGGCAAAGGGAAGAAACATGACAAGGAGGCGATGCGAGCATCTCTGGACAGCAGGGGTTCTGCCGAGCTCCTGGAGGAATCTGGGGGAAACTTGTCCCCTTCTGAGTCCATGACCTCTATTCCCACATGTATGCCCTTCTCCTGGTTTGGGGACCGAGATAGGGACAAGGAGCCTTCGTCCACCAGCAGCAGCATACCATACGCAGCCACTGAGACCAGCAGTGAGCAGAGCCAGGACCGCAAGAACaaaAACCTGGATGATGAGCCAGTGCCCACGGGGAAGGAATATCAATGGCAGAACCGCCCTGTCTCCGAGTGGACCAATCAGCAAGTCTGTCACTGGTTGATGGGCATGAACATGGACCAATACACGCCCGAGTTCACCGCCAAGGGTGTGGATGGCCATCAGCTCATGCACCTGGACAGTGACAAGTTGAAGGCCCTAGGTGTGTCCAGCCAAAGTGACCGGGCCACCATCAAGAAGAAGCTGAAGGACATGAGGAAGGCCCAGGagaagatggagaaacagagggagaaaagggagaagGAATCACGGCGCAGCGGGAGACTGCCTCCCATCACTGACTCTGTCTGCTGAACTGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304910 lncRNA downstream 3274 49561352 ~ 49561761 (-) True G268358
TU304894 lncRNA downstream 6602 49558184 ~ 49558433 (-) True G268351
TU304892 lncRNA downstream 7506 49555919 ~ 49557529 (-) False G268350
TU304893 lncRNA downstream 7506 49555968 ~ 49557529 (-) True G268350
TU304888 lncRNA downstream 15095 49549681 ~ 49549940 (-) True G268346
TU304935 lncRNA upstream 2716 49610830 ~ 49611085 (-) True G268382
TU304988 lncRNA upstream 70893 49679007 ~ 49709073 (-) True G268428
TU305019 lncRNA upstream 118040 49726154 ~ 49727656 (-) True G268458
TU305020 lncRNA upstream 119623 49727737 ~ 49728138 (-) True G268459
TU305018 lncRNA upstream 122835 49730949 ~ 49731347 (-) True G268457
XM_036964921.1 mRNA downstream 62010 49494001 ~ 49503025 (-) False LOC118944672
XM_021597161.2 mRNA downstream 86918 49475978 ~ 49478117 (-) True dlx2a
XM_021597152.2 mRNA downstream 151922 49390493 ~ 49413113 (-) True LOC110520101
XM_021597151.2 mRNA downstream 152555 49390493 ~ 49412480 (-) False LOC110520101
XM_036974412.1 mRNA downstream 152557 49390493 ~ 49412478 (-) False LOC110520101
XM_036974439.1 mRNA upstream 186543 49794657 ~ 49802026 (-) False sp3a
XM_021597182.2 mRNA upstream 186555 49794669 ~ 49802026 (-) False sp3a
XM_021597183.2 mRNA upstream 186555 49794669 ~ 49802026 (-) False sp3a
XM_021597185.2 mRNA upstream 186555 49794669 ~ 49802026 (-) False sp3a
XM_036974441.1 mRNA upstream 186555 49794669 ~ 49802026 (-) False sp3a
TU304858 other downstream 62064 49502416 ~ 49502971 (-) True LOC118944672
TU304852 other downstream 69232 49495477 ~ 49495803 (-) True G268310
TU302595 other downstream 1531733 48032047 ~ 48033302 (-) True LOC110505248
TU302286 other downstream 1965220 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 4027493 45536332 ~ 45537542 (-) True G263274
TU305027 other upstream 259103 49867217 ~ 49871645 (-) True LOC110520119
TU305117 other upstream 292059 49900173 ~ 49901538 (-) True LOC110520121
TU306341 other upstream 832091 50440205 ~ 50442872 (-) True LOC110520139
TU306786 other upstream 1520326 51128440 ~ 51129310 (-) True LOC110520160
TU307414 other upstream 1865210 51473324 ~ 51474139 (-) True fgf9

Expression Profile