RNA id: XM_036974439.1


Basic Information

Item Value
RNA id XM_036974439.1
length 3342
RNA type mRNA
GC content 0.51
exon number 8
gene id sp3a
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49794657 ~ 49802027 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaaatattaaaTGTACATAGAGTATAACAGTGTACAATGATGTTTGACTACTTTTGGTGTTCCTAGTTTTTGAGCATAGGGTCTGCTctgtgccagagtgcgctctgggagGTCGTAAATTtagagcgtttcgctctcggagggTTCACTGAACGCTCTGGCAGAGGgatagggttgatccgagcgttctgacctcacaacgttagtcaagcacccaagcgaACTGGCTAATattggctaacttgctagctacttccagacacaaatgagagaacacgtCACTCTGCCCATTGTACTCGCTCTAGCAGagctgttatccagagcgttggtaaCTGTGCTGCGGACGACAATTTATTTACACTGTTTTGCCggcgtttactgacaccggccatattcaataggtgttgagcgttcgtaaattaatCAGCTATTCTGcgcgaatttacgaacgcacccataATCTCAACTACTGACAGACTGTCAAAATCACTGTGATGAACAGTTGACAATCGATAATATGTTTAGTGAAAATTGACATTAAATTGGGCCaatctattttattcagctgcCAACACAAGGAAAGCATCTAGCTACAAATGCAGCCATCACATCTTATTTTGAAAAACCAAGGGTCGACAGGCACTGAAATCTTAATTAACAGATTAATTGGTTTATAGTTACACTAGCTGGCTTTAAATTTAGGATAGGCATAAATTACCTAAATTGAGAGGTAAGGGAAATAATTTAAGAGTATGTTTAAAATCCACTGTGGCTGCAGAACGCTTGTATACATTAACGGTTATCAATGGACAGCATAGCTCCTGgctccatttatttttttgtcacCATATTATTGAGAGAAAAATAAACAGGAAAGGAATTCGTCAGAAGATGACTGACATGTACACTGGCGAATGATAATGTAGGGAATAAAATACGGTAGCCAATTGGGTTTAAGAAGAACGGCGGGATTTCCTGTGCGTTACCCAATCTTGGAGACCCCACCCTTTGTGTTTCCCGCACCGTCAATCAAAATAGAAACAATTGACTAGAATCACCGATTGCAGCCAGCCTTCGATTACTGTAATCATGTTTCGCTTGTGGTAATACAGAGATTCTGCGAAATAAAATAATTCACGCAATGACTGCCCCAGAACAGCCAGTGAAACAAGAGGAAATGGCTGCCTTGGACGTGGACAGCAGTCAAAGCGAGTTTCTGCAGCAAGACTGTGGCACAGGAGATCAGGACACTCAGTCGTCATCGCTCGCTCTGCTGGCAGCTACCTGCAGCAAGATCGAGTCGGCATCATCAGATGGGGGTAACGGTGCTGCCGCTGCAGTGACGACAGACCTAACATCCATCCAGTTAACAGGGAACCCAGATAGATGGGAGGTTTTGACCCCCACAACAACACGGAAGGAGGAACCTGGCGCGGTCCATATCCAGAGTCGGGGGATCGTGACATCAAACGGACAGTATGTTCTTCCTCTCCAGAACCTTCAGAGCCAACCGATCTTTGTGACATCAGGAAGCGACACCTCCGCCAACACAGTGCCTAACATTCAGTACATTCAGACAGCTGATGGACAGCAACTGAGCTTCTCCACCTCCAGTGAGGACGGGGCCACTCTGAGCCAAGATGCCACAGGGCAGATCCAGATCTTGCCTGACGGAACTCAGACTATAAGTGTGACTGGGGCCGGAGACATCCTTACTAATAACCAGAACCTCATATCACAGACTGGTCATGTCCAGCAGATCCAGGGTGTTTCTATCGGCAGCTCCACCTTTAACAACCAGGGTCAGGTTGTCACTAATGTGCCTATGGGGTTGCCAGGGAACATCACCTTTGTCCCCATTAGCAGTGTGGACTTGGACTCCCTGGGCCTCTCTGGTGCTCAGACTATAGCAACAGGGGTCACTTCTGATGGCCAGCTCATCATGACCAGTCAGCCTGTGGACAACTCTGAGAGTTTGGAGAAGACAGGTGACCAGCACTCGCAAACACTGTCTGTAAATGACTCAAATGCTAATGCAGACATGTATGTGCCAACGTCCTCCGCCCAGCTGCCTGAGGCCATGGATGAGACGGGTGTTCTAACCCAAGCCCCAGAGCAGACAGACCCCTCTGGTCTCCAGGGCTACATTCAGCAGAACCAGGTCCAGAACATCCAGGTGTCCTCAGGCCAGTCCATCATCCAGCTGCAACAGGTGCCAGTCCAGACCAGTGATGGTCAGCTGGTGCAGGCAGCAGGGGGACAGACCATGCAGAACGTTCAGCTCATCAACCCAGGGACCTTCATCATCCAGGCCCAGACCGTCACGGCCTCAGGGCAGATCCAGTGGCAGACCTTTCAGGTGCAGGGGGTCCAGAACCTCCAGAACCTCCAGCTGTCCACCAACCCAGCCCAGCAGATCACACTGGCCCCATTGCAAACCCTGTCTCTGGGCCAGGGAGAAGCGCAACAGATCCCCAACCTGCAGACTGTGACTGTCAACTCTTTGGTCCAGGCAGGCATTCAGTACCAGCAGGCAGAGGACACCAACAGCCCTGGAGACGTCCAGATAAAGGAGGAGCCGGACTCCGAGGACTGGCAGCTGGGCAGTGACTCCACTCTGAACACCAGTGACCTTTCCCACCTGCGGGTCAGGCTAGAGGACGAGGAGGACCAACTCGGCGAGGGGGGCAAGCGGCTACGCAGGGTGGCCTGCACCTGCCCCAATTGCAAAGAGGCTGGGGGGAGAGGATCCAACATGGGAAAGAAGAAGCAACACATCTGTCACATTCCGGGCTGTGGGAAGGTGTACGGGAAGACATCCCACCTGCGAGCGCACCTGCGCTGGCACTCAGGGGAGCGGCCCTTCGTCTGCAGCTGGATGTACTGTGGGAAGAGGTTCACACGCAGCGACGAACTGCAGAGACACAGAAGGACACATACAGgggAGAAGAAGTTTGTCTGCCCGGAATGTTCCAAGCGCTTCATGCGGAGCGACCACCTGGCCAAGCACATTAAAACTCACCAGAACAAGAAAGGAGTCATGAACTCTGTGAGCAACGCGGTGGTTGGCTCCATGGAGTCCGCGGGCTCGTCAGACAGCATCATCACGGCGGGCGGCACCACCCTCATCCTCACCAACATTCAGCAGGGCTCCAGTAACTCCCAAGACATCCTGGCCAATGCTGAAATCCCACTACAACTGGTCACTATAGCAGCCGGAGAAGTCCTAGAGATGGCCGAGTCACAGTGACACTCACTTGCTCATCACTCATTTTcacctactcattccagggtttttctttatttttactatttctacattgtggaataatagtgaagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305031 lncRNA downstream 40 49791748 ~ 49794617 (-) False G268467
TU305032 lncRNA downstream 40 49793508 ~ 49794617 (-) False G268467
TU305034 lncRNA downstream 262 49793508 ~ 49794395 (-) True G268467
TU305033 lncRNA downstream 1321 49791748 ~ 49793336 (-) False G268467
TU305023 lncRNA downstream 56207 49738222 ~ 49738450 (-) True G268462
TU305074 lncRNA upstream 2951 49804977 ~ 49805179 (-) True G268501
TU305075 lncRNA upstream 4382 49806408 ~ 49806670 (-) True G268502
TU305030 lncRNA upstream 77085 49879111 ~ 49881820 (-) True LOC110520120
TU305043 lncRNA upstream 120971 49922997 ~ 49930662 (-) True G268470
TU305123 lncRNA upstream 138850 49940876 ~ 49945765 (-) False G268548
XM_021597166.2 mRNA downstream 186543 49563841 ~ 49608114 (-) False LOC110520112
XM_021597167.2 mRNA downstream 186543 49563841 ~ 49608114 (-) False LOC110520112
XM_021597168.2 mRNA downstream 186543 49565035 ~ 49608114 (-) False LOC110520112
XM_021597169.2 mRNA downstream 186543 49565035 ~ 49608114 (-) False LOC110520112
XM_036964921.1 mRNA downstream 291632 49494001 ~ 49503025 (-) False LOC118944672
XM_036974444.1 mRNA upstream 12745 49814771 ~ 49858346 (-) False LOC110520118
XM_036974445.1 mRNA upstream 12745 49814771 ~ 49858349 (-) False LOC110520118
XM_036974446.1 mRNA upstream 12745 49814771 ~ 49862076 (-) True LOC110520118
XR_005048133.1 mRNA upstream 65161 49867187 ~ 49871478 (-) False LOC110520119
XR_002472943.2 mRNA upstream 65161 49867187 ~ 49871675 (-) False LOC110520119
TU304905 other downstream 227183 49563848 ~ 49567474 (-) True LOC110520112
TU304903 other downstream 228668 49563848 ~ 49565989 (-) False LOC110520112
TU304858 other downstream 291686 49502416 ~ 49502971 (-) True LOC118944672
TU304852 other downstream 298854 49495477 ~ 49495803 (-) True G268310
TU302595 other downstream 1761355 48032047 ~ 48033302 (-) True LOC110505248
TU305027 other upstream 65191 49867217 ~ 49871645 (-) True LOC110520119
TU305117 other upstream 98147 49900173 ~ 49901538 (-) True LOC110520121
TU306341 other upstream 638179 50440205 ~ 50442872 (-) True LOC110520139
TU306786 other upstream 1326414 51128440 ~ 51129310 (-) True LOC110520160
TU307414 other upstream 1671298 51473324 ~ 51474139 (-) True fgf9

Expression Profile