RNA id: XM_021597189.2


Basic Information

Item Value
RNA id XM_021597189.2
length 3200
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC110520117
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49862239 ~ 49865998 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACTAGGTAGTGTAGGAGCTCCGAGCCAAGAGAGAAATCGTGTGACTACGGAAAAGCAAAGTGTCTGAGTCGAATTGGAAAAGTACACTATTGCAGAATTGTGACCAATTCAACATAGCAAAGACCCTGGATATGGCTACGTCTATACTTGGGGAAGAACCACGATTTGGAACTACACCTCTAGCTATGCTGGCTGCTACTTGTAACAAAATTGGCAATACCAGTCCCCTTACCACTCTACCTGATTCCAGTGCTTTTTCAAAAGGCGGATTTCATCCTTGGAAAAGATCCTCCTCTAGTTGCAACTTGGGATCCAGTCTCCCTGGATTCACTGTAGCAACAAGCCGCGGATCGACCGGACTAACATCAACTACTGGCACAGGCAACAGCGCGTTCTGCTTAGCCTCGACCTCCCCGACCACATCTGCGTTTTCCACAGAGTACAGCAGTCTGTTTTCCAACTCAGCAAGCATTTCGTCTCAAGAGTCTGGGCAATCAGCCTTCATTTCCAAAGTCCACACATCAGCAGAAACCTTGTACCCGAGGGTAGGGATGGCACATCCGTATGAGTCGTGGTACAAGTCTGGTTTCCATTCAACCATCTCGGGCGATGTTACTAATGGGGCGTCCGCGTGGTGGGACGTTCATACCAACCCTGGCTCATGGCTCGAGGTCCAAAACCCTGCAAGCTCGCTGCAGACCTCCCTGCATTCCGGGACCCCCCAAGCCATACACTCTCAGCTCAGTGGCTATAACCCTGACTTCTCCACTTTGACACACTCGGCATTCAGCTCAACCGGTATAAGTCCCACGGCATCGCATCTTCTATCAACCAGCCAACACCTGTTAACACAAGAGGGATTCAAAACAGTCATTCCAACATACACGGACGCCTCTGCCGCCAACGCTATGATTTCAGGTTCCAGTTCTGGTTCCTCAAGGTCATCCAGGAGGTACTCTGGCAGAGCCACGTGCGACTGTCCGAACTGTCAGGAGGCTGAGCGGCTGGGGCCTGCAGGGGCCAGCCTCCGGAGGAAAGGACTTCACAGCTGTCACATTCCAGGCTGCGGTAAGGTGTATGGCAAAACCTCTCACCTTAAAGCCCATTTGAGATGGCATACTGGCGAGCGGCCATTTGTCTGCAATTGGCTTTTTTGTGGCAAAAGATTTACAAGATCAGATGAACTTCAGAGACACCTCCGTACCCACACCGGCGAGAAAAGGTTTGCTTGCCCAGTATGCAACAAGCGCTTTATGAGGAGCGACCATTTGAGCAAGCACATTAAAACCCACACTGCCGGTGGTGGTGAAGGCAAAAAGGGAAGCGACAGTGACACCGACACCAGTAACCTGGAGACCCCCAGGTCCGAGTCCCCAGAACTAATTTTAGACGGGGTAAACCCCAGAATCAAGGATCCATCTCCTCATGACGAGCACTGAATGGCTGTTATTTGAATGACCTTGAAACTAACTTTATAAAGCAAATGACCAGTAGGTTATCAAAACTGGTACATGTATTAAAACGGGTCTGGGTTTGAGAGATAGTATTGGAGGAAAATACGATTTTACGCAAAGCAtttgaaaacaaaaaaataattcaAACTTAACACCATATTGATTATGTTCAACTCGTTATTCACCATCAAACGAAAAGCAGAATTATTCTATTATTATGTGAAAATGACATAACTAGCTGTCAACTTAAAAATGAACCGCGGGGTACTTTTTACGATCAGTGCTTAAAAGGGGCGAGCTAACCCAAATGAACTTGGTTGGCCCATGTGAGTCGCCATCATATTGTACATATTGACAACAAACAATGTGTTATTTTCATGTAAATGTAAATTATGATTGTTTTATTCGTGTTTGGGATCCTGAAATTCAGGGAGTTTACTTTCAACGCACTTTGTGGATATGTATGTACACAGCTTTTTAAATTCAGTTAACCATTTCATTTCTttgctaaaaaaatatataaatgtttaCTTGTATAAAGTCACACGTATAAGACTTTCATTTTGTCATAATTAAAACGATCTAAAATCTGAGGCAGCATTCGTGTGATGGGAATGTTTCACTGTATTGGGTCCCATACTTGTTTTCATTATGCGGAATGAAAATAAATTATGAACCAAGGTATTTTATGTGATGGTATAAATGGTAAAAATGAACGATTGCCAAACGTAAAATGTAGATAGGCAAGAGTGTTCCTTTACATAAAATCAATCATACATTGCTGATATAGGCAATCGCACATTGACGTGCATTCTCTCTGAGGAATAAATCAATAGTTAATGCCCCGGAAAAGACATTTCATGCCCAAATGAAAATCTTGTTAAATGGTATTAATTATGACTTGGAGCACATCGCAACCCCATGTGTCTTGTATTTGCGATTAGGGATTCGTGTCTTATCAAATATCTAATTAATCTCCGAGACATCATTTGTTCAGCTTTACTTTATCTGGGGGCTTCCAGGGGGTTTTGATGACAAAGGCCCCCtgaatatttattttaattgtcCAAATTAACTGCTTTAATTTGCATGTCAAACGGAAAGATGGCAGTCCAAGAATAAGGATAAAGCATCTCTAAGCTTTCCTTGAAACTCTACACTTGATTTGATGTTATGGGAACTGTTTCTAAACTTTTGAAAAGGAAAAGGGGTAAAAAGCCATATGCAAATGATGAAATTGAAATGCTCTTGTCGCGGCGCAGTCAAATGGTTCCTGCATGTTATTTGAATATCAGTGGCCCCGTATTGAAAGGGTTCAAGGATGCTCTCTGACTTCTTTGTGCTTACCCAGTGCAGCGTCCGATCTCAAAGAAAAACCCGGGGAATAATTACAGCGTGAGCCCAGGCCTGGGAATATGTTAGGGACAGGCATCTCATCTAGATAACCTCTTTCTGAAGAGGAAGTTCAATTGAccaatagagaaattattttcaTTTCCTTTTGTGTGGCTGGCTTTGAGATCACGAAAATAacgataaaaaaataaaatgtaaattttTCTATTAACCACGAATTCGAGTTTAAAAATAAACAGCTTAGAAAAGACAACGTATTATAGCCTATATTTGGCATTTAATATAAATGTGAACTTTTAAATGAAGTCTACAGGCAAAATAAAACAGGCCTATTCAATAGGCTATTATTATATAACTGAACATTCATGATAAATTAATACAACCTTCA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09199 SP9; transcription factor Sp9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303989 lncRNA upstream 585 49861376 ~ 49861654 (+) True G267546
TU303932 lncRNA upstream 67608 49791755 ~ 49794631 (+) True G267503
TU303899 lncRNA upstream 114537 49744473 ~ 49747702 (+) True G267471
TU303852 lncRNA upstream 247394 49614584 ~ 49614845 (+) True G267427
TU303838 lncRNA upstream 250820 49611075 ~ 49611419 (+) True G267416
TU303990 lncRNA downstream 1217 49867215 ~ 49867792 (+) True G267547
TU304034 lncRNA downstream 40464 49906462 ~ 49951847 (+) True G267579
TU304035 lncRNA downstream 42896 49908894 ~ 49909998 (+) True G267580
TU304001 lncRNA downstream 74786 49940784 ~ 49946014 (+) True G267555
TU304049 lncRNA downstream 89518 49955516 ~ 49955866 (+) True G267594
XR_005048018.1 mRNA upstream 94883 49757817 ~ 49767356 (+) True LOC118959582
XM_021597179.2 mRNA upstream 126777 49731876 ~ 49735462 (+) False cdca7a
XM_021597181.2 mRNA upstream 126777 49731876 ~ 49735462 (+) True cdca7a
XM_036974435.1 mRNA upstream 130302 49676929 ~ 49731937 (+) False zak
LOC110504188 mRNA downstream 5809 49871807 ~ 49874217 (+) True LOC110504188
XM_036964928.1 mRNA downstream 178720 50044718 ~ 50063834 (+) True LOC118944674
XM_021584389.2 mRNA downstream 268697 50134695 ~ 50136597 (+) True hoxd13a
XM_021597211.2 mRNA downstream 273215 50139213 ~ 50141004 (+) False hoxd12a
XM_021597212.2 mRNA downstream 278657 50144655 ~ 50146492 (+) True hoxd11a
TU303972 other upstream 6737 49836617 ~ 49855502 (+) True G267529
TU303803 other upstream 306401 49554498 ~ 49555838 (+) True G267381
TU303780 other upstream 349764 49510803 ~ 49512475 (+) True G267358
TU300304 other upstream 3029995 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other upstream 3030035 46831008 ~ 46832204 (+) True LOC110520046
TU305367 other downstream 296303 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 736304 50602302 ~ 50604816 (+) True LOC110520146
TU305958 other downstream 1032591 50898589 ~ 50900277 (+) True G269291
TU307177 other downstream 1707982 51573980 ~ 51578683 (+) False LOC110520169
TU308945 other downstream 3300954 53166952 ~ 53172428 (+) True acvr2aa

Expression Profile