RNA id: XM_036974447.1


Basic Information

Item Value
RNA id XM_036974447.1
length 2691
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC110520120
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49879110 ~ 49895110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAACATTCGGCTAAATCGTTTCCCCCCCGGTCCCCCCATGTAGTCTAATGTGATTGGTGAAGTAGTTTGCTGTCAGAACAAGAAGGAAATTGCGGGGTGTtgtgacatagagagagagataccgTATTTTAGATTTTCAGTAACTGGTAGTGACACCAGCAACACCATCAGCGTGGCCAGGCATGAGAGCTGATATCTGAGGATTTAAACCACCAGCGCCACAATGGAGGTCCCTGCCATCAGTAACAACTTCAACCTTTCAAATGGGGACTTGGATCCCTCGGACACCCCTCCCACCATGTCCATTGACAAGCTCTTCCCAGCACTCCTGGAGTGCTTTGGGATCATCTTGTGTGGCTATATTGCTGGTCGAGCGAACATCATCACATCCACACAGGCCAAAGGATTGGGGAACTTTGTGTCCAAGTTTGCCCTCCCAGCATTGCTCTTTAAGAACATGGTACTCTTGGACTTTGGGAATGTCATCTGGCCATTTTTGTGGAGTATTCTCATCGCCAAGgtgtctgtgtttttcattgtgtgtgtgattacacTACTGGTTGCCAGTCCTGACACTCGCTTCAGCAAAGCTGGCCTATTCTCCATCTTTGCTACTCAAAGCAATGACTTTGCTTTGGGATACCCGATTGTTGAGGCCTTGTACAAGAACACACATCCAGAGTATCTACAGTACATTTACCTGGTAGCACCAGTGTCCCTCATGCTTCTCAACCCCATTGGGTTTGCCTTCTGTGAGATCCAGAAGTGGAGGGATCAGAGAGACCGGCAGCAGAGCAAACTCCAGATAGTGGGTGTGGTCATCCTGCAGGTTCTGAAGAACCCCATGGTCTTCATGGTTGTTATTGGCATTATCTTCCACTTCATCCTGGATCAGAAGATCCCTGCTTTCATGGAGCAGTTTGTGGACGGCCTGGCCAACTCTTTTGGAGGAGCAGCTCTGTTCTACTTGGGCCTCTCCATGGTGGGCCAGTTGGGGAAGCTCACCAGGTCCACGGTTGTAGCCCTTATCCTGCTCATCACAGCAAAACTGTTGGTGATGCCGTTAATCTGTCGAGAGACGGTGGAGCTGCTGGACGCTGACAACACCAGCTCTAGTCTCGAACACTCCAGTCTCTCCAACTATGCCTTCCTCTATGGAGTCTTCCCTAGTGCCCCCAGTGTGGCCATCTATGCTGCTCACTATAACATGGAGCTACAAGTTGTTACCTCAGGGATGGTAATAAGCACGTTTCTCTCAGCTCCCATTATGTATGTTTCTGCTTGGTTGCTGACAATACCATGGATGGACCCTAAGCCATTGATGGATTCTCTGCAGAATGTCAGCTTTAATGTCAGCATCATCAGCTTAGTTGCACTGGCTTGGACAGTTACTGTCATGTTCCTGAGTAAGAAATTTAAGAGACTACCTCACATGTTCACCGTCAACCTGTTCTTGGCACAGATTCTAGCTTGTGTTAGCATGATCATGTGGAACTTTGTCGTGAGACAAGACCGCTTCATTGGACACGTGTTGACATTCACACTGTTGTACGGCTCACTGTACAGTACTTATGTATGGCCAGGTCTGATAGCACTTTCCCTTGTGTTGATGAAGAGAGGTGGTGAGCTGAAGGTTGCGCCAGGCTTCCTGGTGATTGCAGGCTGGGGAGTCCCAGCCCTTGTGGCAGCAGTGCTCCTCGTAACTGGGGAGAGGATGCCCGACACCATCGATTCGGCTTTCTTTTATGGAAGACCGCAGATCATCTGCACCTCCGTTGTGCTTGCCTTCAGCATAGTGCTGGGCGGGTGCTCTTTGGTGGGCCTCCGTCGAGGCACGTGGGACTCAATGTACCATGTCCTGGAGAGAGACTCTATGCTAGGCACTATTGAGGATCTGAGGCTCCCGACTGACCCAGATACCCAAACTATCCCAGATATCCGTGACATGTTTGAGCCAGCCGGAACTGGAAGCATCAACATAGGTCCGTGTGAGACTGGCTGTGAGTCGCCAGGCTGTCTACTGGCCCAGGAGGAGCAGCAGGTGGCTGACAGACAGGTGGCCCGCCATGTGCTCTTATGCCTGCTACTGATCGTCAGCCTACTAGCTAACCTGTCCAGCTGTCTGTGGTGGCTCTTTAGTCGAGTTCCTGGGAGACTTTACTTAGAGCTGCAGttcttctgtgctgtggtcaACTATGGACAGGGCTTCATCTCGTTCGGGCTTTTTGGGCTGGACAAACATTTGATAATACTGCCATTTAAAAAGAAGATATCCTGTCTGTGGCATAGAAGGAAGCCAGAGGAGCAGCCTCAACTGGTTGTATCTGATGACATCATGATGACCTGCACTCAGTTCATCAGATACCACAAAGAGCAGTGTGTCCGGGACATTGTCCAGCAGAAGAGGTTTGTGGAGAGAGTACAATACCGACTGTGCCAGATGAAATGCAATATTCTTTATTGTTGGAGTCATGTTACTTTTTCCTTAATGGGATTGTGCTTATTACTGTTGCTAATAAGGTAATTGAGCCATGTATTCACCTTGTTTGGCATTATGAATGTTTGAATGTTTTTCATGTCACTTGACTAAAAGAGAATGTACGGTATCATGCACTTTGAAGCTAACTAATGCTGCATGTTCTTCTATGATTCCCAGACtgtttttttaacaaataaactgCTGTATTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305075 lncRNA downstream 72440 49806408 ~ 49806670 (-) True G268502
TU305074 lncRNA downstream 73931 49804977 ~ 49805179 (-) True G268501
TU305032 lncRNA downstream 84493 49793508 ~ 49794617 (-) False G268467
TU305034 lncRNA downstream 84715 49793508 ~ 49794395 (-) True G268467
TU305033 lncRNA downstream 85774 49791748 ~ 49793336 (-) False G268467
TU305043 lncRNA upstream 27887 49922997 ~ 49930662 (-) True G268470
TU305123 lncRNA upstream 45766 49940876 ~ 49945765 (-) False G268548
TU305125 lncRNA upstream 45766 49940876 ~ 49945765 (-) True G268548
TU305138 lncRNA upstream 65805 49960915 ~ 49961213 (-) True G268560
TU305266 lncRNA upstream 150816 50045926 ~ 50046290 (-) True G268673
XR_002472942.2 mRNA downstream 7429 49867187 ~ 49871681 (-) False LOC110520119
XR_002472943.2 mRNA downstream 7435 49867187 ~ 49871675 (-) False LOC110520119
XR_005048133.1 mRNA downstream 7632 49867187 ~ 49871478 (-) False LOC110520119
XM_036974446.1 mRNA downstream 17034 49814771 ~ 49862076 (-) True LOC110520118
XM_036974445.1 mRNA downstream 20761 49814771 ~ 49858349 (-) False LOC110520118
XM_021597196.2 mRNA upstream 217 49895327 ~ 49901575 (-) False LOC110520121
XM_036974448.1 mRNA upstream 217 49895327 ~ 49901575 (-) False LOC110520121
XM_021597197.2 mRNA upstream 10323 49905433 ~ 49920327 (-) False LOC110520122
XM_036974450.1 mRNA upstream 10323 49905433 ~ 49920328 (-) True LOC110520122
XM_021597199.2 mRNA upstream 67357 49962467 ~ 49978117 (-) False atf2
TU305027 other downstream 7465 49867217 ~ 49871645 (-) True LOC110520119
TU304905 other downstream 311636 49563848 ~ 49567474 (-) True LOC110520112
TU304903 other downstream 313121 49563848 ~ 49565989 (-) False LOC110520112
TU304858 other downstream 376139 49502416 ~ 49502971 (-) True LOC118944672
TU304852 other downstream 383307 49495477 ~ 49495803 (-) True G268310
TU305117 other upstream 5063 49900173 ~ 49901538 (-) True LOC110520121
TU306341 other upstream 545095 50440205 ~ 50442872 (-) True LOC110520139
TU306786 other upstream 1233330 51128440 ~ 51129310 (-) True LOC110520160
TU307414 other upstream 1578214 51473324 ~ 51474139 (-) True fgf9
TU307458 other upstream 1702289 51597399 ~ 51599898 (-) False il1rl1

Expression Profile