RNA id: XM_021597211.2


Basic Information

Item Value
RNA id XM_021597211.2
length 1566
RNA type mRNA
GC content 0.41
exon number 2
gene id hoxd12a
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50139213 ~ 50141004 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAAGGGTTGTAAGAAGCGTTTGAGAGAGCTCCATGGAAATGTGTGAGCGCAATCTTCTGAATTCTGGCTATGTTGGTTCTTTGTTGAATTTTCCTACCCCGGAGTCGTTATATTTTTCCAACCTGCGGGGCAATGGAGCTCATCTCTCTGGGCTGCATCAGATTTCCTACAACAGGCGAGAGGTGTGCTCGCTCCCGTGGACTTCCCCAAGTTCGTGCACATCTCCGCCTCAGAGCCGCGCCTTCAGTGGCTACTCTCCGCCGTTTCTATCAAATTCAGTCCCTGTAAATACTAATCCCAACAACCACAACAAGGGACCACTTGACGAGTCCAATAAATACTACTTTCAGGATGTAAACCACAAGCCAGAAGAACCTGCTAGACATGCGCAGGCCTTTTCTGGTGAACATGGAGTTATCAATTTCGGTAGCTCAAAATATGAATTTTCGAACTTGGATAGACGGTCACATAATTCCGGGGCACAACACGAACTGAATCCCACCAACCAGGCAAGTGCCGCCGGCTTCAAGCAGTCGGCCCATTCAATTCCCACAATTCAACCATCTTCAAGTAATGCAGGTGCCAGGGCGTCATTTTCTCATGATGCACCCTGGTGCTCTTCACAAGTGAAACCCAGAAAGAAGAGAAAACCATACACAAAGCCACAGCTTGCTGAACTTGAGAACGAATATATGATGAACGAGTTCATAAACAGGCAAAAAAGGAAGGAACTCTCTGAAAGACTGGACTTGAGTgatcaacaagtcaaaatatggtTTCAGAACCGCAGAATGAAAAAGAAGAGGCTGATGATGCGTGACCATGCATTTTCCATGTACTGAGAGCCTTGGGTCTTGATAATGACCTCGTGTGGCTTCGGTTCAGACAAGCGCAGCCACTTCAATCCTCTGTCCTGAGCCACTGATCTTGGCAATATAGTTATAGGcctatcatttatttttattttaagaaCGATTTATTGTATATTTTGGATGGTTATACAAACAACTGAGCTTGTGAATTGTTGTTACTATTGGCCTTGTATTATTAGGTAGTTGGTGATGAAGAAAGCATTATTTATTTTCTGAAAGTCACGTATTGAACTTgtgtttgagtgtttgtaaaGCATGCGATTTAGGTCAATAGGATACTTCTTGGCCTAATGATTTTATTCAACGACTCACACACTATATCTGAGCGTATAATAAGGTATGGCAATGTCAATGGATGATTGTTTTTAATATAGGCAGGCTATGCAAgcgttcattttttaaatttgtttcTGGGCTATGAATGTTATTTATAATTGAATCTTAATACATGTATAAGTTATGTAGGCTTATTGTATTGACGAAATACACCATGATTATACGGTTAGAAATGTATATTGCTCATATCTGTGATCAGTCCTTCTACGAGGCCTTCACAATTGCTCGTCCAAGCTCAAGTTCGTGTTTTTTGTCGGTGGAAAAATGAACCGTGAAATGTGTtttggattattattattttttaaatgtgtttgcatgTCTATCTAATTCAACacaataaatgtgtttttgtctta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305308 lncRNA upstream 36157 50102779 ~ 50103056 (+) True G268714
TU305183 lncRNA upstream 54056 50084110 ~ 50085157 (+) False G268604
TU305504 lncRNA downstream 91467 50232471 ~ 50232690 (+) True G268877
TU305583 lncRNA downstream 151681 50292685 ~ 50292893 (+) True G268956
TU305597 lncRNA downstream 171508 50312512 ~ 50312731 (+) True G268970
TU305565 lncRNA downstream 180483 50321487 ~ 50322542 (+) True G268938
TU305566 lncRNA downstream 181765 50322769 ~ 50323146 (+) True G268939
XM_021584389.2 mRNA upstream 2616 50134695 ~ 50136597 (+) True hoxd13a
XM_036964928.1 mRNA upstream 75379 50044718 ~ 50063834 (+) True LOC118944674
LOC110504188 mRNA upstream 264996 49871807 ~ 49874217 (+) True LOC110504188
XM_021597189.2 mRNA upstream 273215 49862239 ~ 49865998 (+) True LOC110520117
XR_005048018.1 mRNA upstream 371857 49757817 ~ 49767356 (+) True LOC118959582
XM_021597212.2 mRNA downstream 3651 50144655 ~ 50146492 (+) True hoxd11a
XM_021597213.2 mRNA downstream 5807 50146811 ~ 50153227 (+) True hoxd10a
XM_021597214.2 mRNA downstream 14831 50155835 ~ 50158848 (+) True hoxd9a
XM_021597218.2 mRNA downstream 21274 50162278 ~ 50184327 (+) False hoxd3a
XM_036974475.1 mRNA downstream 25912 50166916 ~ 50184327 (+) False hoxd3a
TU303972 other upstream 283711 49836617 ~ 49855502 (+) True G267529
TU303803 other upstream 583375 49554498 ~ 49555838 (+) True G267381
TU303780 other upstream 626738 49510803 ~ 49512475 (+) True G267358
TU300304 other upstream 3306969 46831008 ~ 46832244 (+) False LOC110520046
TU305367 other downstream 21297 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 461298 50602302 ~ 50604816 (+) True LOC110520146
TU305958 other downstream 757585 50898589 ~ 50900277 (+) True G269291
TU307177 other downstream 1432976 51573980 ~ 51578683 (+) False LOC110520169
TU308945 other downstream 3025948 53166952 ~ 53172428 (+) True acvr2aa

Expression Profile