Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021597212.2 |
| length | 1148 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 2 |
| gene id | hoxd11a |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 50144655 ~ 50146492 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K09296 | HOX_11; homeobox protein HoxC/D11 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU305379 | lncRNA | upstream | 3741 | 50139433 ~ 50140914 (+) | True | hoxd12a |
| TU305308 | lncRNA | upstream | 41599 | 50102779 ~ 50103056 (+) | True | G268714 |
| TU305183 | lncRNA | upstream | 59498 | 50084110 ~ 50085157 (+) | False | G268604 |
| TU305504 | lncRNA | downstream | 85979 | 50232471 ~ 50232690 (+) | True | G268877 |
| TU305583 | lncRNA | downstream | 146193 | 50292685 ~ 50292893 (+) | True | G268956 |
| TU305597 | lncRNA | downstream | 166020 | 50312512 ~ 50312731 (+) | True | G268970 |
| TU305565 | lncRNA | downstream | 174995 | 50321487 ~ 50322542 (+) | True | G268938 |
| TU305566 | lncRNA | downstream | 176277 | 50322769 ~ 50323146 (+) | True | G268939 |
| XM_021597211.2 | mRNA | upstream | 3651 | 50139213 ~ 50141004 (+) | False | hoxd12a |
| XM_021584389.2 | mRNA | upstream | 8058 | 50134695 ~ 50136597 (+) | True | hoxd13a |
| XM_036964928.1 | mRNA | upstream | 80821 | 50044718 ~ 50063834 (+) | True | LOC118944674 |
| LOC110504188 | mRNA | upstream | 270438 | 49871807 ~ 49874217 (+) | True | LOC110504188 |
| XM_021597189.2 | mRNA | upstream | 278657 | 49862239 ~ 49865998 (+) | True | LOC110520117 |
| XM_021597213.2 | mRNA | downstream | 319 | 50146811 ~ 50153227 (+) | True | hoxd10a |
| XM_021597214.2 | mRNA | downstream | 9343 | 50155835 ~ 50158848 (+) | True | hoxd9a |
| XM_021597218.2 | mRNA | downstream | 15786 | 50162278 ~ 50184327 (+) | False | hoxd3a |
| XM_036974475.1 | mRNA | downstream | 20424 | 50166916 ~ 50184327 (+) | False | hoxd3a |
| XM_021597220.2 | mRNA | downstream | 23109 | 50169601 ~ 50172397 (+) | True | hoxd4a |
| TU303972 | other | upstream | 289153 | 49836617 ~ 49855502 (+) | True | G267529 |
| TU303803 | other | upstream | 588817 | 49554498 ~ 49555838 (+) | True | G267381 |
| TU303780 | other | upstream | 632180 | 49510803 ~ 49512475 (+) | True | G267358 |
| TU300304 | other | upstream | 3312411 | 46831008 ~ 46832244 (+) | False | LOC110520046 |
| TU305367 | other | downstream | 15809 | 50162301 ~ 50183026 (+) | True | hoxd3a |
| TU305730 | other | downstream | 455810 | 50602302 ~ 50604816 (+) | True | LOC110520146 |
| TU305958 | other | downstream | 752097 | 50898589 ~ 50900277 (+) | True | G269291 |
| TU307177 | other | downstream | 1427488 | 51573980 ~ 51578683 (+) | False | LOC110520169 |
| TU308945 | other | downstream | 3020460 | 53166952 ~ 53172428 (+) | True | acvr2aa |
