RNA id: XM_021597221.2


Basic Information

Item Value
RNA id XM_021597221.2
length 1850
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110520134
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50316070 ~ 50321294 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTATCCGGTTCATCATGGTAAAACCGATCCTGGATCAGTTAACGACTGCACGACCAGTTTAGACTTCCTATCACGTGGTGCAGTAGCTTCCTTTCTTCTCAGAACCAAGGAAAGAGAATACTTCGCAAAATGGAGGGTCATGAACATAGGGAGCCTGAACAGCTCAGGAAGCTGTTCATTGGGGGCCTAAGTTTTGAAACCACTGAGGAAAGTTTAAGGATCCATTTTGAACAATGGGGAAACCTGACAGACAGTGTGGTAATGCGGGACCCAAACAACAAGCGCTCGAGAGGGTTCGGCTTTGTAACATACTCCTGTGTGGAGGAGGTGGATGCCTGCATGGCAGCTCGCCCTCATAAGGTGGACGGACGTGTTGTTGAACCTAAAAGGGCTGTATCGAGAGAGGACTCTAACAGACCGGGTGCCCACCTGACGGTGAAGAAGATATTTGTTGGGGGGATCAAGGAGGACACACGGGAGGACCATATCAGGGAGTACTTTGAGACCTACGGGAGGATCGAGACCATTGACATTATGGAGGAACGCGCAACTGGGAAAAAGAGGGGATTCTGCTTTGTCTCATTTGATGACAATGACACTGTGGATAAAATTGTTGCTCAGAAATACCATACAATAAACAGCCACAACTGCGAAGTCAGAAAAGCACTCCCAAAACAGGAAATGGAGGCGTCCAATCAGAGGAATAGGGGTGGTGGCTCTGGAAACTTCATGGGCCGAGGTGGTAACTCTGGTGGTGGCAACTTTGGGCAAGGAGGCTACGGTGGcggaagaggaggggatggataCAATGGATACGGTGGAGAGGGTGGAAACTACAGTGGGGGACCTGGCTACAGAGGTGGACGTGGTGGCGGGTATGGGGGAGGAAGTCCTGGGTATGGTAACCAGGGAGGAGGCTTTGGAGGAGGATATGATAACTACAACGACAGAGGCAACTTTAGAGGGAACTTTGGTGGTGGAAGGGGCGGAAATTACAATGACTTTGGCAACTACGGAGGACCACAATCTAGCTATGGTCCCATGAAGGGGAACAACTTTGGTGGTAGAAACTCTGGTGGTGGCCCCTATGGAGGTGGCTACGGCTCAGGCGGTGGAAGTGGGCATGGCTACGGCTCACAGCGATATTGATACTATGACGCTCGGGCTTCAGTTCTTAGCAGGAGAGGAGATGAGCAAGGATTTGTCAGGAAAGCTGCAGGTTACTGTACTTTTAGGCAGTCGTCTGAAAGCATGTAGAGGAACAGAAGTCAGAAAGTTATTGCAGCTTTAACGGGAAACTAATCCTAAGAAAGACTGTACACACAAACTACAAAGTGCAAGGGTGTAGCTAGTACCTTATTTGTGGTAGATGTTCCCCCACTTTATAATTGTTCCTTTTGTGCATCTGAAGTGTATGTATTGTTGTGCCTGTGGAATCAGGAGttttaacaaaaataaaaaagtatttcgAACTCCAGTCAGTTTTGAATAGTCCTACATTTATTTTGCTGTAGATTGATAGATTTTCTATGGTCTTCTCATCTTTGTCGTTTTTGAAGAACTTGGTCCTGTCAGAAGGGCCTATACGCATCAGGCCCTCAAATAAGCTAGTGctgtcttttttttcttttgaAGTTAATATGATTGCAAGTCTTTGTATCAAGTGTATTATGATCTGTATTTCAAGAACCCCATGTATTTTATTAGTGACAAGTGGTTATAAGTAGTGCAGACAACAATTTTAAGGAAATGTGTTTTACACTACTTGTATGCAGTAAACAGAATTCTagattgtaaaaaatattttgacaaGTGGAAAAAAGTTTAATAAAGTTGTGTAGTAAAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305597 lncRNA upstream 3339 50312512 ~ 50312731 (+) True G268970
TU305583 lncRNA upstream 23177 50292685 ~ 50292893 (+) True G268956
TU305504 lncRNA upstream 83380 50232471 ~ 50232690 (+) True G268877
TU305379 lncRNA upstream 175156 50139433 ~ 50140914 (+) True hoxd12a
TU305308 lncRNA upstream 213014 50102779 ~ 50103056 (+) True G268714
TU305565 lncRNA downstream 1286 50321487 ~ 50322542 (+) True G268938
TU305566 lncRNA downstream 2568 50322769 ~ 50323146 (+) True G268939
TU305563 lncRNA downstream 3081 50323282 ~ 50324581 (+) True G268936
TU305568 lncRNA downstream 4482 50324683 ~ 50324958 (+) True G268941
TU305602 lncRNA downstream 14361 50334562 ~ 50336340 (+) False LOC110520136
XM_021584398.2 mRNA upstream 127376 50187165 ~ 50188694 (+) True LOC110505268
XM_036974475.1 mRNA upstream 131743 50166916 ~ 50184327 (+) False hoxd3a
XR_002472946.2 mRNA downstream 14099 50334300 ~ 50335908 (+) False LOC110520136
XM_036974478.1 mRNA downstream 17966 50338167 ~ 50367192 (+) False agps
XM_036974477.1 mRNA downstream 17968 50338169 ~ 50377090 (+) True agps
XM_021597229.2 mRNA downstream 134838 50455039 ~ 50519865 (+) False osbpl6
XM_021597234.2 mRNA downstream 134838 50455039 ~ 50519865 (+) False osbpl6
TU305367 other upstream 133044 50162301 ~ 50183026 (+) True hoxd3a
TU303972 other upstream 460568 49836617 ~ 49855502 (+) True G267529
TU303803 other upstream 760232 49554498 ~ 49555838 (+) True G267381
TU303780 other upstream 803595 49510803 ~ 49512475 (+) True G267358
TU300305 other upstream 3483866 46831008 ~ 46832204 (+) True LOC110520046
TU305730 other downstream 282101 50602302 ~ 50604816 (+) True LOC110520146
TU305958 other downstream 578388 50898589 ~ 50900277 (+) True G269291
TU307177 other downstream 1253779 51573980 ~ 51578683 (+) False LOC110520169
TU308945 other downstream 2846751 53166952 ~ 53172428 (+) True acvr2aa
TU309190 other downstream 2901226 53221427 ~ 53223265 (+) True LOC110520187

Expression Profile