RNA id: XM_021597223.2


Basic Information

Item Value
RNA id XM_021597223.2
length 3380
RNA type mRNA
GC content 0.46
exon number 5
gene id nfe2l2a
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50325109 ~ 50332906 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCAGACTGCTTGGGGTTTTCCGTAAACTTTCACAAGATTAGAAGCACTATTTCCTTCATAGTCAAAACATTGCTGGGCCGGACTCCTCGCCTTCGGATAGTCCACCATTTTATATTTCTGTAAAGGATTAcaaatttatatttttatatagGCCTATTGGGTTTTTCTTTACAAAGGGACAAGCCAACTATCCACTATGATGGAAACTGAGATGCATAAAATGAATCCTAGTCAACAGGACGTGGACCTAATCGACATCCTGTGGAGGCAGGACATTGACCTGGGCGCAGGGCGAGAGGTGTTTGACTACTGCCACCGTCAGAAGGAGCATGAGTTGCAGCGGCAGCGggtgcaggaggaggagaagaggcagCAGCTGctgagagagcaggagaaggcCTTGCTGGCTCAGCTACAGCTGGATGAGGAGACGGGGGAGTTCGTGCCCCGCCTTGCACCCAGCGGCCAGTCACCGCAGTCTGCCACCACCGCCGCACCCCCTCAAGTcacacagAATGTCAGCTTCACAGAAGACGGAGATGCCATGTCATTTGATGAATGTATGCAGCTGCTGGCAGAGACCTTCCCACTGGTAGAGGCTACGGCAACCGCTTCCGTCTGTCTGGATGTCACCGTAGCTCCAGCCCCAAACAGCAACCATGTCATGGCATGTGAGCTGCCAGCTTTGACCCAGCCACCCCTCCTCCCAGCCCCCCAGCCCCCACAGAGGACCTCCCCAGATTTGGAGCAGGCCTGGATGGAGCTTTTGTCCCTTCCTGAGCTGCAGCAATGCCTGAATATGCAAATGAAGGACACACTGGATCAGACAGGAGGATATCTGCCCACTAACACCACCCCTGAGGTGCAGGATCCAAACTACAGCTTCTACCCATTGCCCAACCTGGCAGAGGTGGCATCAAATGCAGCAGAGGTCTGCCCACCTGAATTCATCAACGCCTTTGAGGAGAGCTTTCCCAACATGGCTCCTCTTGACCACCTCAATCAGATGACCCTAAAGGCTCCAGACCTAAATACTAACTTCAGTGCAGCAACTTTCTGTGATGTATTTTATCAAGACATTGTTAACACAAAAGTGACAAGTGTCACCCTGCCTTGTGGCCAAGGAAATGGAGGTAACTCCTTGGCAGAGATATCACACAAGCCTACTTTTACACCAATGGAATTACATGACCTTTCTCCTAGAGAAGCATTTGACAGAGGAAACAAAACTGAGATAATGCCAGAATTTCCAGATTCGGACTCAGGTGTGTCTGTGGAGGCAAGTCCACATGCTAGCTCCCCTGAGAAATCGATGTATGGGGATGGATCCTTTGGTGGCTACAGCGATTCAGACATGGAGGAGATGGACAGTAACCCTGAGAGTGCAGAGTCTGACTACTCCGAGATGTTCTCACTGTCTTTCCAACCGGATGGTTTCCAGACTTCTCCCCCTGTGTCAGCTCAGCAGCAGGACAAAAAGCCCAAACATGGCAAGACCGAGCCAGATGAGGAGACAGGCCACAACGATCCCCCCTTCACCAAAGACAAGAAGAGGAGACGCTCCGAGAAGCGCCTCTCCAGAGACGAGCAGCGTGCCAAGGCCCTCCAGATCCCCTTCACTGTGGACATGATCATCAACCTGCCTGTGGACGACTTCAACGAGATGATGTCCAAGCACCAGCTCAACGAGGCCCAGCTGGCCCTGGTCAGAGACATCCGCCGGCGGGGCAAGAATAAGGTGGCTGCCCAGAACTGCCGCAAACGCAAGATGGAGAACATCGTGGAGCTGGAGTATGACCTGGACTCACTGAAGGAGGAAAAGGAGcgactgcagagagagaagacCAAGAATTACAGCAGCGTGCGACAGATGAAGCAGGAGCTTAACACCCTGTACCTGGAGGTGTTCAGTCTagtgagggatgaggaggggaagCCCTACTCCCCGTCAGAGTACTCCCTCCAGCAGACCACCGATGGCACAGTCTTCCTCGTCCCCCGCattaaaaaaatgcttttcaagaAAAATGACAACTAGCACTTCTCTGCTTTACTACTTGGTACTGCATTAGTAATAATACTATGCAAAGAACAACGTTGTAGATGCTTGGCTTTAAGCGTTAGTAAAATAGCAGAACTATTATATAGTCCTTGCCTACTCTCCTTGAATGCCTTTATAATATTTTTGACATTTGAGTTTTTTTGTACTGGTCTCCACTTTCATCTAAGGTTGTTTTACTGATATTGCTTGTAAATACATTTATACATGATTTGCTATTGAGATATGAAAATGTGAATGGTATATATCATGTTTTAGTATGCAAATGATATTGTTGCAATCACTGTTACTTAAAAGTCTGTTTTATAAACTTTACTCTTTGATTTGCAGCtctgtttattttgtattttctgaCCCTTTTCTGCTTAAGGCCAAAGGGGGTGTGATATATTGCATGaggcaacgcggagtgcctggacacagccgtggtatattggccatatatcacaaacccccaaggtgccttattgctattataaactggttaccaatgtaattagagcagtaaaaacaaaatgttttgtcatacctgtggtttACCGTCTGATATAATTttcagcggcaggtagcctagtggttagagcgatgggccagtaaccggaaggttgcaagattgaatccccgagctgacaaggtaaaactctgccgttctgcccctaaactgttcctaggccgtcattgtaaataagaatttcttcttaattgacttgcccagttaaataaaaggttaaatcaaataaaaatataccTCGGCTGTCAGCCAATTCAGGGCTCGAATGACCCAGTTtataaaatgaaataaacaatgaCATTTCGTCAGTTACTCTTAAGTTTTATATCAGCCTAAACACAATCTATATTGATTTATAAAGCACTACATGGCCTTGCACCCGAATACATGTCTGATATGCTTTTAATGTTTGATATCTTCTGCCACTGGTCTTTTAGTCATTCCAAATGTCAGAACCAAAACTTTTGGTGAGGCTGCCTTCAGACACTACGGTCCTGGTCTTTGGAATAGCCTGCCGGATCTTAGGTCCTCAAACTGTTGATTCTTAAGATTTGTCTTAAGACATACCATTTTATCCGTGCTATTAACTAAAGTGCTTTTATTTGTCTTACCAATATTAGGAACTTTTATCCGCTTTTTCTGCATTCAATTTCCTATCCACTGCTATTTTACTCTTAATGTCTATCTTGATTTTATATTTGCATAGAAATGTTTGATCTTTCCACCTTTAATTTTATTTAAGCACTTTGAAAAGCATTTGTAAGAATTTTGCTATataaataaagttggatttgataGTATGCAACAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K05638 NFE2L2, NRF2; nuclear factor erythroid 2-related factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306276 lncRNA downstream 1983 50322767 ~ 50323126 (-) True G269603
TU306277 lncRNA downstream 2557 50321491 ~ 50322552 (-) True G269604
TU306305 lncRNA downstream 4910 50318737 ~ 50320199 (-) True G269632
TU306309 lncRNA downstream 6505 50318073 ~ 50318604 (-) True G269633
TU306302 lncRNA downstream 11892 50312997 ~ 50313217 (-) True G269629
TU306310 lncRNA upstream 312 50333218 ~ 50333431 (-) True G269634
TU306336 lncRNA upstream 32970 50365876 ~ 50372026 (-) True G269649
TU306346 lncRNA upstream 45537 50378443 ~ 50380183 (-) False pde11a
TU306354 lncRNA upstream 55992 50388898 ~ 50389175 (-) True G269663
TU306355 lncRNA upstream 56290 50389196 ~ 50389424 (-) True G269664
XM_036974459.1 mRNA downstream 200489 50119669 ~ 50124620 (-) True evx2
XM_036974455.1 mRNA downstream 225412 50084100 ~ 50099697 (-) True lnpa
XM_036974456.1 mRNA downstream 225422 50084100 ~ 50099687 (-) False lnpa
XM_036974457.1 mRNA downstream 225558 50084100 ~ 50099551 (-) False lnpa
XM_036974458.1 mRNA downstream 225558 50084100 ~ 50099551 (-) False lnpa
XM_021597227.2 mRNA upstream 45494 50378400 ~ 50436074 (-) False pde11a
XM_021597228.2 mRNA upstream 107295 50440201 ~ 50442930 (-) False LOC110520139
XM_021597239.2 mRNA upstream 187359 50520265 ~ 50525331 (-) True prkra
XM_021597241.2 mRNA upstream 201173 50534079 ~ 50542111 (-) False LOC110520142
XM_021597240.2 mRNA upstream 201173 50534079 ~ 50542288 (-) False LOC110520142
TU305117 other downstream 423571 49900173 ~ 49901538 (-) True LOC110520121
TU305027 other downstream 453464 49867217 ~ 49871645 (-) True LOC110520119
TU304905 other downstream 757635 49563848 ~ 49567474 (-) True LOC110520112
TU304903 other downstream 759120 49563848 ~ 49565989 (-) False LOC110520112
TU304858 other downstream 822138 49502416 ~ 49502971 (-) True LOC118944672
TU306341 other upstream 107299 50440205 ~ 50442872 (-) True LOC110520139
TU306786 other upstream 795534 51128440 ~ 51129310 (-) True LOC110520160
TU307414 other upstream 1140418 51473324 ~ 51474139 (-) True fgf9
TU307458 other upstream 1264493 51597399 ~ 51599898 (-) False il1rl1
TU307459 other upstream 1265029 51597935 ~ 51600230 (-) True il1rl1

Expression Profile