RNA id: XM_021597234.2


Basic Information

Item Value
RNA id XM_021597234.2
length 6177
RNA type mRNA
GC content 0.46
exon number 22
gene id osbpl6
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50455039 ~ 50519865 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTGCTGCAGGGAGGAGCGTTGAGCATCCGTCTGAGTGACTGCATTCAAGAAGAGAACGGGCATACACAGCACTTTTTTGACTTTCCATTGCTTATGTTCTAAACCTCGATCTCATCTACTGTATTAGCAAGGGGTTTCAACGCGGAGCATCCTAGGCTGACATCATCCGTCTCAATAGGAACGCGGGGTTTTCTGTTGCATAGGGAAGTCGTATCATTTATTTCCTGCGCAAAAAAATTGCAGACATGGTCAATACAACGAAACATCGATGAGAGGAGCGTGAGCCGGGGAAAGCGTGCTGCAGAGCTGCATCAGATAATGCTGTTTACCCACATGGCCTGGAGCCGCTGCTGAGGGAGGAACAGCCGAGTCCAGTCAGAAAGCCACAGAGAGGGGTGCTACAGGGAGGGAAGCCATGtcctaccaccaccacaggaaCCCCAGCCAGAGCAGCCACCGCACCATGAGCGCCGAGGAGAGGTGCTCTACGCCCGTCCACCACCACAAGGCGTCCACGCCCACACACAAAAGcgcctcgtcctcctcctcgtaCCAGCGCGACACCCGCCAGGAGGCAGACAGCTGGGAAATCATTGAGGGACTGAGAATCGGCCAGAGCAACGTCCAGAGGCCAGATAAACACGAGGGCTTCATGCTGAAGAAGCGAAAATGGCCACTGAAAGGCTGGCACAAGCGTTTTTTTGTCCTGGACAATGGGATGCTGAAGTACTCCAAGTCGCCCATTGATATTCAGAAAGCCAAACTGCATGGCTGCATTGATGTGGGTCTGTCAGTCATGTCCATCAAGAAGAGGGCCCGCCGCATTGACTTGGACACAGAGGAGCATATCTACCACCTCAAAGTGAAGTCTCCAGACATCTTTGACTCCTGGGTGGTCAAGCTGCGCCACCACCGTCTCTACCGGCAGAACGAGATTGTCCGCTCCCCCCGAGACGCCACCATAAGGACGTTCCCTCCCCCTGCCACCACCGAGTCCCCCATCCCACACCCCCACCCTCAGCCAGCCCCCACCCCCATTGCGGGACAACATGACGTAAAGGTGGGCCTCTCTTCCCTGGCGGTTACCTCGGCACAGTTGTTCTCTGCTGTGCAGCCCAAACCCACCACCCTTCCATCATGGCAGTCCCCCCCAGTCCCTAGCAGCAGCAGCCTGCCGGCCTCCTACAGTAACGGACAGAGCAAAGTGGCCGCATGGCTTCAGGAGTCGGAGGAGATGGACAAGTGTACAGAGGAGCTCGCCCGCTGCCAGTCCAGCCTGATAGAGCTGAGCAAGTTACTGCAGAGCCTGGAGATCTTACAGAGGACCCAGTCGGCTCCTAATTTCACTGACatgcaggtCCCATCTCTCCCTGTGAGTGCCAGCATGTCTCCAGTTCGCCTCCACTCCTCAAACCCCAACCTGAGTGCTGAGCTGGTGGACATCCAGACCCCTGCCTCTCGCCTGGCTCCTGACAACATAGAGTGTGGAGGCGACTACATCAAACTGCAGGAGGACTTCTGCCTCATCGCTCAgaaagTCCACTCTCTGCTAAAGTCTGCGTTCAACACAGTGGCCATAGAGAAGGAGAAGATCAAAACGATGTTATCAGACCAGGATCAGTCATCAGGGCAGTCTGTCCAGCTCATCACCCTCAGGAAGTCTCTGTCACAGGCCCTGTCCCAAAACGCCGAGCTTAAAACCCGACTGGGCCGCATCCACTCTGAGTCGGTCCTGTCTGAACAAACAGTCAGTGTGAACATCATTCCCAGTTCTGACGAGGCTGGTGAGCAGATGGGAATCCCTCTGACACAACAGACGTCCAATGAGAGCAGGCTGTCCATGTCCGAGTCTGTGTCCGAGTTCTTCGACGCCCAGGAAGTGCTTCTGTCTGCCAGCTCGTCGGAGAACGAGGCCTCAGATGATGAGTCATACGTCAGCGATGTGAGCGATAACATTTCAGAGGACAATGCCAGCGTGACCGATAACGTCTCCAGACAAATGCTGAACGGAGACCTGGCAGGAAGTGCCTTCCGTAACGGGCGGCGCCCGTCCCTCCCCGCCCCCTCGCCGGACTGCAGCAACATCAACCTGTGGAACATCCTGAGGAACAACATAGGGAAGGACCTGTCCAAGGTGTCCATGCCCGTGGAACTCAACGAGCCCCTCAACACCCTGCAGCACATGTGTGAGGAGCTGGAGTACACTGAGCTATTGGACAGAGCTGCCGATACGGAGGACCCCTACGAACGCATGGCCATTATGGCGGCGTTCGTCATCTCAGGATACTCCTCCACGTACTACAGAGCGGGAAGCAAGCCATTCAACCCTTTACTGGGAGAGACGTATGAATGTATCCGTGAGGACAAGGGCATGTGTTTTATCGCTGAGCAGGTGAGCCACCATCCACCAATCTCAGCTTGTCACGCTGATTCCAACAAGTTCACCTTCTGGCAAGATGTCAGATGGAAAAACAAATTCTGGGGGAAATCCATGGAAATCCTCCCCATTGGCACAGTCAATGTTATGCTACCAAGCTTTGGGGACCACTATGAGTGGAACAAGGTCACCACCTGCGTGCACAACATCCTAAGCGGCAGAAGGTGGATCGAACACTACGGGGAGATCACCATTAGGAACACCAAAAGCAGTGCCTGTATCTGCAAGCTCACTTTCGTCAAGGGAAATTACTGGAGTTCTAATGTCAATGAGGTTCAAGGGATCGTGATGGACCAAGAGGGGAAGGTAGTGCATCGGCTGTTCGGAAAATGGCATGAGGGCCTTTACTGTGGAGTCCCGCCCTCTGCCAAATGCATCTGGAGGACAGGCTCCATGCCCACCGATTACGAGCTGTATTATGGCTTCACCAGGTTTGCCATTGAGCTCAATGAGCTTTGCCCTGAGATGCAAGATCTGCTACCACCCACAGATGCCCGCTTCAGACCCGATCAGAGGCACCTGGAGGAGGGCAATGTGGAAATGGCTGCCTCAGAGAAGCAGCGTATCGAAGACCTGCAACGCACCAGAAGGAAGTGGCAAGAGGAGAATGACATAAAGCACGAGCCACGCTTCTTCAAGAAAGTGGTTGATGCCAATCATAGGGAGCGCTGGGTCACCAACAACACCTACTGGGAGCTTCGCAAATCCCCCGGCTTCATCAACATGGAAAACCCTAATCTATGGTAGCATATGGATCGCTATACAGACCATATCATCACCGCTGACAGAGGCTTTTTCCTATGCACAATACGGTTTTCAAATGAACCTCTCATTGACAAGATGACAGTGTGGAAGGATACAAAAGACTTCAGAGCTGAGAGATGAGTTGGACCATCCGTCACCCTGTTTGGCACTGCAGCCAACCAGTCACCCATCCAAGTATCCTCTTGGATCCCCCCCATTGAGCTTGCTGCAGAGGCTGGGTTGTCAGGGCAACAATCTTACCACGTAGATCTATCCTAAACTGTTTTGACTTCAGAGTATGTCCTTGCCTTAAAAAGTCACCTATCCACACCACACATTTTAAAGCTTTTAGTGAAACCCACTTGAGTTCTGAAAGCAGTTTGATTTAGACTAGTGTTTGGATTAGGCTTTTGATTACCTATTACTGTATGTATCATGCATGTTTAGAGTGCAGCTTTCATTGGCATATGCTATATAGACTATAACAAAAATAAAATTGAAAAAAGTCTGATATTTTTGCAAAAATATCGTCAACTCATAGAATTTAGTGAAAATGTAACTATTATACAATATTGGCAAGATTGCTCTTATTTTTGGATCGGCCTTTTTGTATTAGTTGAATCTGTATCGTAGCTGTATTCTCTCTTGggacacatttttgtttttgcagtTCATTTGTTTTAGTCACTGGTATTGATGGACGTTGCTGTATCCTGAGAGGTTTCCTCAGCAACTCCAAAAAGACAAACCCCTTGAGCGGAGACTTTTAGTTCCAGTTTGCCTGGAAGAGGAGCATCATTACAAGCCCAACTGCTGATGCGTAAGCACTGACCTGAGAAACAACTTCCTTTTTGACCCTTCATGTCACTCACCACAACTGTTATTGCAAACCACATGTATAGACTTTACTTCTTCCCCTTTACAGCTCACATTCAAACTAGTTTTAATAGtttaagttaaaaaaataaaagttttaaaaagtcATTATAAATATAATTGTAATGTTCTTTAATTTCCTGTACTACAATTTCTGTGTTTTTTGCTGTTTGCAGTTTAGCCTGTAGTATAACTGAAAGGACATGTGTAATACTAACACTCAGGACGTCTCATGATGATCTGAAGAGATTCCTACCCAGAACGGTTGGCCTTGTGCCATACCCTTCTGAGGAATCAATTTAAAACCTGGTCACTTATCTGGATACATGGTTACACGAATCATCTTTGATTCTGTCCATATATAGTGAGGGAGCCAGTGGGCTCGTCAAATGTATTTCCGTTCCACTTGAGTCCGGTCTCGCGTTACTTTCCTGACCAAGCCACTAACTGAAATGTCATAGTGAAAGTGGAGTCCTCCTGTGGCAGTATAGAGGTCAATGTGTCCTCTACTGGGAACCACATGACTCATGACCATTCGACCGTCACAACTACACCAGACTGACTACCCCCACTTATACAATTAGTGTTTTATGAAACACTAGAGCCACCTACTGTCAGTTCTTTGAAAACACTTTACATGAATTCATATGTATGTGGAAATCTGTTATGTAGAGGCCAAGGGCTTGAGTAAGTCAAACAACTTTTATTACGTTGTTTTAGAATGTTCAGAACTTTCTGCTTTTGCAAATGGCAGAATGTGGATGTTAAAGCCAAAGACcaacattttaataaataaaaataaacttgtTCAAGTTCTGTGGTTTTAATTAGGTAGTTACGACACAGCTAATGCTATTTATTATATTTGAATATCCTTTAAACATGTGTCCAGTTCCTAGAGAGTTTATCCTTTACACCAACCAATACAATTGAAACAGTTTAGATCTTTTACTGCCAAACATTTCAGCTTTAATGTATATTTGATGttcccctccctctgtcactgTGTTAAAGTCAATACACTATGGTGACATTTTTTACATTACCACAGAATCTGTAGTGAACAACATTTTTACATTGGGATTATATTTACTTGTTCTTTGAATTGTTTTGTCCAGAATGAAGCCTGAAATCGAAACAGGAAAAGTGTTTTTATGTAAGAAATATGTTGAATTTAAATGTTCAATTGTAAAGAAAACTATTATTTTGTGTGCAATATCCTGTGCAGTACTGCAGATTAGATCCCAAAAATTATAGATATGTATTCAGAAATCAATTGTCAGTGTCAATTCCACTTTCTGTGCcttaatacatttttattaacGCGTCTCACACAATACTGATAAGAAACCCCATACAAGCCAGATAAGAAAACCATTTAAAATCCAATAAACTACTTTCCCCACAGAGTATTATGTACTAAATAACGACGGTCAGGGAATGAAAATGTTCTGAATGCGTTACATTACACCAAGGAGGGAATGTTGTGGTCTGAGATCTTgttaagagggagggagaatgggagactGTGGTCACACTCAATTGACATTACCCATAAATAATCTAGAAATTCCTTATTTTCTGTGCAGCCACGCCCACTCATTTGTGATCACTGTTATTGGCAGTGCACTACATGTAAACAGCGGAATATTCCTATCTCTTTTGGATTAGATTTATGCAAAGGCTACACCATCCACTCTAACACCAGTACTTTGTTCATAAGGACATTTGAGGATAATGTACTTTGTAAAGTTTTAGTTCTAGATTAATACATTGTTTTCAGAGAGACCAGGAAAAAAAAATAAGAGACTTGTTTCATCAGAGTAGAACAGCTAGACCTGAGTAATTCATCAGTTACAATGTTTATATCTGCATGTTTAAATGACATAGCCTGCCAATGAATGTTGCAAATGCCTTACGAAATATGTTATTTTCTCAATTGGGCTTTTTCTTTTGAATTTTGGACTGACTTGTACCACTACGCACTGTGTCAGCTGAATTCTATCTATTTTCTAATGGGTACCTTCTAAAGTGCAATTGTCAAAGTACATATCTTTCCATGACcactgtacactgctgctacataGTGCTTGTTCTAATAAAAATACATAAAACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305624 lncRNA upstream 12028 50440203 ~ 50443011 (+) True G268989
TU305623 lncRNA upstream 13804 50440203 ~ 50441235 (+) False G268989
TU305672 lncRNA upstream 39496 50415338 ~ 50415543 (+) True G269022
TU305669 lncRNA upstream 44789 50410023 ~ 50410250 (+) True G269019
TU305644 lncRNA upstream 45972 50408856 ~ 50409067 (+) True G269009
TU305736 lncRNA downstream 7673 50527538 ~ 50530940 (+) True G269085
TU305784 lncRNA downstream 125128 50644993 ~ 50645192 (+) True G269126
TU305888 lncRNA downstream 267706 50787571 ~ 50788102 (+) False G269223
TU305885 lncRNA downstream 267888 50787753 ~ 50788258 (+) False G269223
TU305886 lncRNA downstream 267888 50787753 ~ 50788161 (+) False G269223
XM_036974477.1 mRNA upstream 77949 50338169 ~ 50377090 (+) True agps
XM_036974478.1 mRNA upstream 87847 50338167 ~ 50367192 (+) False agps
XR_002472946.2 mRNA upstream 119131 50334300 ~ 50335908 (+) False LOC110520136
XM_021597222.2 mRNA upstream 133745 50316070 ~ 50321294 (+) True LOC110520134
XM_021597221.2 mRNA upstream 134838 50316070 ~ 50320201 (+) False LOC110520134
XM_021597247.2 mRNA downstream 69093 50588958 ~ 50592305 (+) True gpr1
XM_021597253.2 mRNA downstream 75751 50595616 ~ 50601655 (+) True LOC110520148
XM_021597249.2 mRNA downstream 82118 50601983 ~ 50618761 (+) False LOC110520146
XM_021597250.2 mRNA downstream 82118 50601983 ~ 50618761 (+) False LOC110520146
XM_021597251.2 mRNA downstream 82118 50601983 ~ 50618761 (+) False LOC110520146
TU305367 other upstream 272013 50162301 ~ 50183026 (+) True hoxd3a
TU303972 other upstream 599537 49836617 ~ 49855502 (+) True G267529
TU303803 other upstream 899201 49554498 ~ 49555838 (+) True G267381
TU303780 other upstream 942564 49510803 ~ 49512475 (+) True G267358
TU300305 other upstream 3622835 46831008 ~ 46832204 (+) True LOC110520046
TU305730 other downstream 82437 50602302 ~ 50604816 (+) True LOC110520146
TU305958 other downstream 378724 50898589 ~ 50900277 (+) True G269291
TU307177 other downstream 1054115 51573980 ~ 51578683 (+) False LOC110520169
TU308945 other downstream 2647087 53166952 ~ 53172428 (+) True acvr2aa
TU309190 other downstream 2701562 53221427 ~ 53223265 (+) True LOC110520187

Expression Profile