RNA id: XM_021597239.2


Basic Information

Item Value
RNA id XM_021597239.2
length 2739
RNA type mRNA
GC content 0.42
exon number 8
gene id prkra
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50520265 ~ 50525331 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACTTGTTTAATGTTGCTGACGAGACGCTGATTCAAATCGGCAACCCCCCCCCATCCAGCTAATTTCGCCGGTTTCTGCAGGAGATAAATTACATTTGTACAACAATATATTAACGTTACGCACGAAATTGTTTACTAACGTTAGCCATGTCTCAAGACGGATTTCAACCTACACTAATAAGGACCACGCACAATAACAACACGAGCATGAGTATTCAACAAACTCAGGCACCGTGCCCTGGTAAAACGCCAATACAAATTCTGCATGAATACGGAACCAAAATTGGTAACCTTCCCGTGTACGTGATGGAAAAGGCTGAAGGGGAGGCACACCAACCCAGTTTCATCTTTAACGTGACAATAGGCGATGTGTCCTGCACAGGTCAAGGATCCAGTAAAAAAGCTGCCAAACACCAGGCCGCTGAGTCTGCCCTGAACCTTCTGGAAATAGATGCTGGGACACCCCTTCACATAAAGACGGAGAGTAACGGCATCCCAGCAGAGCCCAACGATCAACCCAACTCAGTGGGGATTCTGCAGGAGCTGGCACTGCAGCGGGGATGGCGCCTCCCTGAATACACTGTTCTCATGGAGGCGGGCCCACCTCACAAGAGAGAGTTCACTGTTACCTGCAGAATGGAGTCACTGACAGAGACGGCAATGGGAAATTCCAAGAAGGTGGCCAAAAAGGCAGCTGCGGAGAAGATGGTGGCTAAACTTCAGAATCTGTCTGGCTGTCCTGAAATCACATGGACCCCGAAGCCCAGTGTCCGTCTGGAGAACTTGCGTAACTCCTCTGCAGAGAAGATGTCTCTCCTGAGAAGGAACCCACTCAGCATTCCCAACACCGActatatccagatgatgctggaGCTGTCCAATGAGCAGGGCTTCGAAGTCACATACTTTGACATTGATGAGCTGACTGTGAACGGGCAGTACCAGTGCCTGGCAGAGCTGTCCACCTCACCTGTCACCGTATGCCACGGCACGGGCATCTCCTGCGGCAACGCACACAATGACGCTGCACACAGCGCACTTCAGTACATCAAGATCATGGCTTCTATCAAATGAACGACCCTAGTAAACGTCACCACTGTTTCACCTGCAGAACATATTTAAGAAATTGAGGAGGGAAAAAAAACCCAATTTCATCACAACTGAAACATGTAGCTATCTTCCATCTACCATTATGTTTTCACTCTTTACCCGTGTTTACTCCATATGAAATTGGTGGATATTGAAGGCAGTATCAATAGGAATCATGCGATTCAGACAAAACAATCCAGTTGTTGTTTTTATAACAGTGACAGTCAACACTGTTCATCACCTATGGTTTCTGTCAGATATTGAAGTTACTTTGAGAAGATCAGCGCAAAAAAACCATCTAATCCCATGGGGGTTATTATGTACAGTAGAAAAACAAGGACAAGGGAATAGAATGGACACTAGTCTTGGAACGGCTTTGCTGCCAAAATGTCGACATATCGAAAATAGTCTCCAATTTATCCCAATCATTTATTGAATGATACACAATTTAAAACTGTATTGCACTGAACAAAATTAGTGATGGAAACTGGTTTGGACTCGTTTACCTTTAAGGTTATGAGAAAATAATGAATTTAACGTAATGTTATAGGTTCCCAAAATAATGAAGCCGATTGAAGGCCTATTGGATAAACTATGTAGGAACAAACACAATACATTCAcaatacattaatttcacattttgtATTTGGTTTGATCTTCTAAACGATCTCTGCTTTATTTAATTGGTTATTTCTCTCTGCCAAGATTCAATTACATGACGGAAATAATTTTCCATAGCAATATTAACCCCTATtttccaattggctcattaaaAAGAGTCCATTATCACTTTGTTTGATTTTAGAGAAAAGGTTTTGAGCTTTGGTTGGTTTAAGACCATattactgttttttttattttttatttggttTTATTCAGTCATAGGGAGAAGGACTGGTGTTTTTTGACTACCACCACATGTATTTACAAAGAACACTAATATTAAGCAGGTTTTTGTTTACAGTGACTTTATCTCCCAACAATTATCATTATAAACATCTGCTCAACTAGAAAGTTACATTTAGCTTGTTTAGGTGAAATTGTGCTGGATATAAAACCACATGTCTTTATTATGAACACATTTCTTTTTGTAAAATGTATCTTTTTTAAGTTAATGGTAGCAAGATGGCATTCTCGGAAACATCTGGACAACTCCTGACTTAGACTTCAAGACCAAGACTGCCATTATTGTCTCTTCATGCTACAAATGAGCAAGAGCCAATAATTGCAATCTTGGTAGCTTTGATGTTGATGACTAAGCAGGTAGTTGCCCTGTTGTGTATGGTGACGTCATCTTGCTCAGTCTGCCTGTAATGTTGTTGCTAGCCTAGTTATGTCAGCTGTATATGAAAGTcatgctgctgtgtgtgtttttgaagaTTTTGAGTTTGTGTCGGCCTTCACACCGAGTCTTGCGAAATGTTTTATGCCGATTACGGAGGATTTTCCACCCTGTCCTGAGTTAGTCACAGAGCCGAGGCTGGGCGGTTTAATCACATTTTCGTTTCCTTTTATCAAGGTGTATTGTAAATCGTCTCAATGTTTTGGCGGACTCATCCCAAGCGCGTGCTGTGTACCTgaccatattaatacatatttaTTACATGTGAAGTGTGACAGACATGTTAAATAAAGCTACCTGACATTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306378 lncRNA downstream 101381 50418537 ~ 50418884 (-) True G269687
TU306350 lncRNA downstream 107095 50412651 ~ 50413170 (-) True pde11a
TU306371 lncRNA downstream 109367 50410694 ~ 50410898 (-) True G269680
TU306369 lncRNA downstream 110460 50409472 ~ 50409805 (-) True G269678
TU306359 lncRNA downstream 126656 50393291 ~ 50393609 (-) True G269668
TU306456 lncRNA upstream 5623 50530954 ~ 50531200 (-) True G269761
TU306458 lncRNA upstream 5940 50531271 ~ 50531890 (-) True G269762
TU306478 lncRNA upstream 75647 50600978 ~ 50605536 (-) True G269779
TU306518 lncRNA upstream 176915 50702246 ~ 50702996 (-) True G269817
TU306596 lncRNA upstream 253338 50778669 ~ 50778893 (-) True G269865
XM_021597228.2 mRNA downstream 77335 50440201 ~ 50442930 (-) False LOC110520139
XM_021597227.2 mRNA downstream 84191 50378400 ~ 50436074 (-) False pde11a
XM_021597223.2 mRNA downstream 187359 50325109 ~ 50332906 (-) True nfe2l2a
XM_036974459.1 mRNA downstream 395645 50119669 ~ 50124620 (-) True evx2
XM_036974455.1 mRNA downstream 420568 50084100 ~ 50099697 (-) True lnpa
XM_021597241.2 mRNA upstream 8748 50534079 ~ 50542111 (-) False LOC110520142
XM_021597240.2 mRNA upstream 8748 50534079 ~ 50542288 (-) False LOC110520142
XM_021597242.2 mRNA upstream 8748 50534079 ~ 50542288 (-) False LOC110520142
XM_021597243.2 mRNA upstream 8748 50534079 ~ 50542288 (-) True LOC110520142
XM_021584410.2 mRNA upstream 17655 50542986 ~ 50543432 (-) True LOC110505276
TU306341 other downstream 77393 50440205 ~ 50442872 (-) True LOC110520139
TU305117 other downstream 618727 49900173 ~ 49901538 (-) True LOC110520121
TU305027 other downstream 648620 49867217 ~ 49871645 (-) True LOC110520119
TU304905 other downstream 952791 49563848 ~ 49567474 (-) True LOC110520112
TU304903 other downstream 954276 49563848 ~ 49565989 (-) False LOC110520112
TU306786 other upstream 603109 51128440 ~ 51129310 (-) True LOC110520160
TU307414 other upstream 947993 51473324 ~ 51474139 (-) True fgf9
TU307458 other upstream 1072068 51597399 ~ 51599898 (-) False il1rl1
TU307459 other upstream 1072604 51597935 ~ 51600230 (-) True il1rl1
TU309282 other upstream 2182852 52708183 ~ 52708816 (-) True LOC110520182

Expression Profile