RNA id: XM_021597243.2


Basic Information

Item Value
RNA id XM_021597243.2
length 2235
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC110520142
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50534079 ~ 50542288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGCGTGAGGAAAGCTCGAAGTACTGTACTGACTTCACGCCACTTGTAACGAAACCTCCCGGTACTTTCAAGGAAATAAAATGACTTGTAGGTGTTATCGGAAAGAAGACAGGATCTTTGGAAAAAATTGATATTCCTGTTGTTTATGTTACCTCTCCAAAAGTACAGAAAGATGCTGTATGACCTGTCAGAGAACATCACTCGAGATGAGTTGCGGGAGATCAAGTTCTTGTTGAGTAATGAACTCCCTCGTAGAAAACTGGAGGACAACCTGACAACCTTGCAATTATTCCTGGAAATGGAGAAAATGGATATTTTGAGCATCGTAAAACTAAACACTCTTGAAAGCATTATTGAAAGTGTCTGCCCCGTGTTGAAAAAAACGATCAAAAAGTACAAGACACAGAATTCCTTATCTGGACCAGGAACTCAAGAGACAGGGGTGGGACAGTTAAGACCAACATCTGTGTCTGAAGCTCATGCAGGAATCCAGGCTGCCTCCATGCTTCCAAAGAGGCCTGTCTCTTGTGAACTATCAGTTGAACCGTATGGCCATTCTGACGAGACTCTCACTCCCCCCACTTACTTCTCGAGTTCACAGCCTTCAGCCAAGGTATCCTCTCTGAATCGATCTGACACCTCTCTGGATGTTCGGAGAGTCTCATATTCGATGGATGCAGGACTTTCACATGGGCTGAGTCTCCTAAGTACCAATGGGGACAACTGTGCTGCTCCCATTAAAGAGTATAATCATGTTTCATCCACATCCTCATGTGGAGACAATAAGAACTTTGGCCCAGCAGATCCTCAGAGAGGAAACACCAAAAGAGAGGAACTGGGAGAATATTCTATGACAGGAAAAAAGAGAGGTTTCTGTCTGATCATTAACAACTGCGACTTTAGAAATTCCCCTCTACCGTTAAAAGAAAGAGCGGGAACACACATTGACAAAAAGAGTTTGGTGAGTGTGTTTAAGTGGCTGGGCTTTGAGACACAGACTGAGCCAGACTGCAGTCGGGAGAAGATACTGTCTCTACTTGCGGAGCTGCGCAACCGGGATCACAGCCAGATGGACTGCCTGGTGTGCTGCGTTCTGAGCCACGGCCTAGAGGGAGGTGTTTACGGGGTGGACGGGCTGGAGGTCAGTGTCAGGGAGCTCACAGAGCCCTTCTCTGGACTGGAGTGCAGCTCACTGAGGGACAAGCCCAAGCTGTTCTTCATCCAGGCCTGTCAGGGCAACAAGGAACAAAAGCAAGTGTTCATCCAGTCTGATGGCCCAGCACCAAGCTCTACTACCTCCAGCTCTATCTGCACTGATGCAGTGGTACACAGAGACTCCATTCCCACTGATGCTGACTTCCTTCTGGGCATGGCCACTGTCCCTCACTTTGCCTCTTTTAGAGACAAGAGGCAGGGCACTTGGTTCATCCAGTCGTTGTGCCAGAACCTCATCAACTTGGTGCCCAGtggGTATGACTTGCTGTCCATCCTGACCAAGGTGAATGATGATGTCAGCAGAAAGACAAATGGCATTAAGAAGCAGATGCCCCAGCCTGCATACTCGCTCAGAAAGAGGGTGGTCTTTCCCATTCCCAAAGAACCACCTCCCAGACTATGTGAGCCACAAGCATTGGCTTGAGAACACTAGAGCAGATTTCTTTAATGGTCGTCACCTTTCCCATCTATTCAGGGTACTGATTCAGAAACTAGTTGAGTGGACTCTCACCGACGATATTAATCCATGGGGAAAAGACTAGTACTTGAATAGCACTGCCCTAGACTGAGAGACTGTCTCCACACTCCTGTCTACACTGCACACCTCAGGGATCCCTCAAGTATAAACTGCTGTGTTTTTCCAAAACTGAATGTTAACTGTTTTTTACACCTTATATAAAAAATGAAATTCAGTATAAATATATCCAAAGAACTGTAAATAGAACGTTTCAGGAATTTTTTTAAAGGGTGTTTTTAAATGTTGTAGAGAAAAAGCAAGAACAACCGAAGAGCACTTAATATGCAACGTTTTCCACATGTTTTTTTCTAAATGGTCAATTTCTTACTCCCTTGCACATTGGCTTCCTAAATGAATACAAAATAACATTTTCAATCAATATAGAtaatgttgttgttgctgctgtttcAATACATCACAGTGTACTCCTTGACACCACATGTCATACAACACATTTAAGACAAATTCTATGATGGAAGAATAAAAAATATGGTCAAACATG

Function

GO: NA

KEGG:

id description
K04398 CASP8; caspase 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306458 lncRNA downstream 2189 50531271 ~ 50531890 (-) True G269762
TU306456 lncRNA downstream 2879 50530954 ~ 50531200 (-) True G269761
TU306378 lncRNA downstream 115195 50418537 ~ 50418884 (-) True G269687
TU306350 lncRNA downstream 120909 50412651 ~ 50413170 (-) True pde11a
TU306371 lncRNA downstream 123181 50410694 ~ 50410898 (-) True G269680
TU306478 lncRNA upstream 58690 50600978 ~ 50605536 (-) True G269779
TU306518 lncRNA upstream 159958 50702246 ~ 50702996 (-) True G269817
TU306596 lncRNA upstream 236381 50778669 ~ 50778893 (-) True G269865
TU306597 lncRNA upstream 236863 50779151 ~ 50779357 (-) True G269866
TU306615 lncRNA upstream 289352 50831640 ~ 50833105 (-) True G269883
XM_021597239.2 mRNA downstream 8748 50520265 ~ 50525331 (-) True prkra
XM_021597228.2 mRNA downstream 91149 50440201 ~ 50442930 (-) False LOC110520139
XM_021597227.2 mRNA downstream 98005 50378400 ~ 50436074 (-) False pde11a
XM_021597223.2 mRNA downstream 201173 50325109 ~ 50332906 (-) True nfe2l2a
XM_036974459.1 mRNA downstream 409459 50119669 ~ 50124620 (-) True evx2
XM_021584410.2 mRNA upstream 698 50542986 ~ 50543432 (-) True LOC110505276
XM_021597244.2 mRNA upstream 3778 50546066 ~ 50585892 (-) False LOC110520143
XM_021597246.2 mRNA upstream 3778 50546066 ~ 50585892 (-) False LOC110520143
XM_036974508.1 mRNA upstream 3778 50546066 ~ 50585893 (-) False LOC110520143
XR_002472947.2 mRNA upstream 3778 50546066 ~ 50585893 (-) False LOC110520143
TU306341 other downstream 91207 50440205 ~ 50442872 (-) True LOC110520139
TU305117 other downstream 632541 49900173 ~ 49901538 (-) True LOC110520121
TU305027 other downstream 662434 49867217 ~ 49871645 (-) True LOC110520119
TU304905 other downstream 966605 49563848 ~ 49567474 (-) True LOC110520112
TU304903 other downstream 968090 49563848 ~ 49565989 (-) False LOC110520112
TU306786 other upstream 586152 51128440 ~ 51129310 (-) True LOC110520160
TU307414 other upstream 931036 51473324 ~ 51474139 (-) True fgf9
TU307458 other upstream 1055111 51597399 ~ 51599898 (-) False il1rl1
TU307459 other upstream 1055647 51597935 ~ 51600230 (-) True il1rl1
TU309282 other upstream 2165895 52708183 ~ 52708816 (-) True LOC110520182

Expression Profile