RNA id: XM_021597246.2


Basic Information

Item Value
RNA id XM_021597246.2
length 4312
RNA type mRNA
GC content 0.49
exon number 25
gene id LOC110520143
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50546066 ~ 50585895 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGGCCACCGCCTTCCATtcgccccccctccccctccccctccgccCGTTGCTGCAGGAGTCCTCTCCCCCACTGACTGGATACATGAAGAATTACCCGTAAACGACATCTTCCCTGCAATAATGGGCCGCCAGCTAATTACTGCGTTGACGTGTTGATATAAAGATATTTCAGATATCAAATATGAATCATGCATTTGATATTTCTGGCAAATTTGCTCGTGAGCATTCTTGCGTCCTGGCTCCATCCATCCATAGCGGCAATTGTTTCTcaaggaggagagaatgaggtgGTGGAGAGGGACGCAGTGTCATTATTGTCGGAGCGAGAGGCAACTGCAGCAGCGGCCACAGGCAACACAAGTCACCGTGCGGCTGAGCATGTGATCACCTACCCCTCTCGGCTCATCTACTACCTGAACGAGGACTCAGAGAGCACCTACCATGACCTGGACACCCGGGCTAGGAGCCAGGTCACAGAGGGTCATGACCAGGCGGTCCACCTTGCTCAAGCCAGTTTCCAGTTAGAGGCCTTTGGCTCCAGATTTGTACTGGACCTAACGTTAAACAATGACTTGTTGTCGTCGGATTATGTGGAGATCCACTATGAGGAGGGTAAACCTGTTCTATCAAAGGGTGGTGAGCACTGTTACTACCATGGCCAGGTGAGGGGGGAAGATGACTCTAATGTGGCCTTGTCTACCTGCAATGGGCTGCACGGAATGTTTGATGATGGACTCTATGTGTATCTAATTGAGCCTCTGCAACAGACTCACTCAATTGATACAGCTGCACGACCCCACTCTCTGCGCAGGAGGCCCACCCTCCAGAGGAACAATGACCAAGAGGAACTGGTGGAGGAGGAGCAGCTGCTTTCGGAGCTGGAGGACATGTCCTGGCTGAAGCGCAGGAAAAAGCGGGCTatgcCTCGGAATGTCTTTGAGGAAATGAAGTATTTGGAGATTATGATTGTCAGTGACCACAATATGTATAAGCGACACAAGGCCAAGCAGCACACCAGAAACTTTGCCAAGTCGGTGGTGAACTTTGTGGATGCTATCTTTAAGGAGCACCTGCACACACGGGTAGTTCTGGTTGCCGTGGAGATATGGACGGACAAGGACCACATTCCCATCAGTGTGAAGCCACTGGACATGCTGAAAGATTTCTCTAAGTACCGGGCGCAGAGCATCAAGCAGCACGCTGACTCTGTGCACCTCTTCACCAATGTGACCTTCCACTACCGCCGGAGCAGCGCAGCGTACTTCGGGGGCATGTGCTCTGTGAGCCGTGGAGTAGGGGTAAACGAGTATGGCACCACGTGGACCATGGCTTCGTCACTCTCCCAGAGCTTGGCACAGAACCTCGGCATCCAGTGGGATCCAGCCGCCAAGAGAAAGGAATGTGGCTGTGCCGACTCCTGGGTGGGCTGCATCATGGAGGATACTGGGGTCCAGCATCCCCGGATGTTCTCCAAATGCAGCATCTCAGACTACAAGGAATTCCTGCTGAAAGGCGGTGGATCCTGTCTTTTTAACAGGCCAAACAAGCTGTTTGAATCCACAGAGTGTGGGAATGGATACATTGAGGTGGGAGAGGAGTGTGACTGCGGCGCTAGATCTGAGTGCTACAAGGAGTGCTGCAAGAAGTGTTCCCTAGCTAATGGTGCACATTGTGCTGATGGACCTTGCTGCAACAACACTTGTCTGTTCTACCCGCGAGGTTATAGTTGTCGCTATGCAGTGAATGACTGTGACATCTCAGAGACATGCTCAGGAGACTCTGGCCAGTGCCCTCCTAACCTTCACAAACAAGATGGCTACCACTGTCAAGTCGACCAGGGACGCTGCTATGGTGGAGAGTGCAAGACCAGGGGGAACCAGTGCAAATACCTCTGGGGTTCAAAGGCGGGAGGCTCCGAGAAGTTCTGCTATGAGAAGCTCAatacagagggaacagagaaggGAAACTgtgggaaggatggagagaaatgGCTCCAGTGCAGCAAACACGATGTGTTCTGTGGGTCCCTGCTGTGCAGCAACATAGGACGCAACCCCCGCATCGGGATGATGAAGGGAGACATCACCCCCACCTCCTTCAATCATCAGGGCAGGCTGGTGGACTGCAGtgGTGGCCATGTTCTTTTGGACGATGAGACTGATTTAGGCTACGTGGAGGACGGGACGCCCTGTGGGCCGTCCATGATGTGCCTTGACCGCAAGTGTCTGCCCATCCAGTCCCTCAACATGAGCGCCTGCCCCAGCGGGCCCAACAGCCAGGTGTGCTCAGCCCACGGGGTGTGTAACAATGAGGCGACGTGCACCTGTGACACGACATGGGCGGGGACAGACTGCAGCATGCCCGACCCCCCCAAGGAGCCTGCACCCGCAGAAGATGAAGGACCAAAGGAAATGTGAAGAAGCGACGGTACGACCCCAACGCCAGTGCCATATAAGGCCGGAGGAGAGGTCGAAGGGCACAGAGGGATCCTCTGGACTGCACTTACAGCTGCTGATTTTTGGCATTAGATTTACTTGAAAAAGAAATAGAGGACAATTTAACAAATTCCATCTTAGTCATGTAGAAATGCAGCCTTCTTCAACCCCACCCACCTAACAACCCCATCCTGATCTCTAGAGCTACAGAActcctctccttttcctttcATCGTTAGTGCCAGTGCACAGGCGTTCAGGCGGAACTCACACCATTATATTCTCTCACCAGGCATGATTTCCCGCACAGAGCGTGCAGCTCGCTGGCTCTGGCATGAGGGGCCCTCGCTAAAGGACTTTGCATGGCTACCAAAGCTATGAACGACACACAgcaaatcaacaaaaaaaaaaaaagaagagagaaaTCACCACTGAATCGTCAAATGGAGGAGAATAGCCTCATTAAAAAACAAACCCGGTGGTACCCTGAACAGGCTCCTCCTCCTTAGGTCACCACAATGAGAGGAAGAGGGCTGCATGCTAGAACCCAAATGGGAAACGCAGACCACATTCAATAAATTGAAGCATATATCGGGCAACATTGTACATAAAAGAGGAGAACGAGTTCAGATTCTGAATTATAACATATCATtttacactgacacactctgcTTCTGTTTTATCTTTAAGCATGTTGTATAGCGGGTGTTTTTGGCAATGTTAATGAAAAACAGTAACGCAATTATGATTTGGGCCAAAATGCTATGGATAACCAGACAATGTCATAGTCTGTCTATTAGGTGTTACCACGCGCTACATTCTGTATTTATCCAAtatagaggtcaaaggtcaggttCAGTATACACAGTACAGATGAGAGGTCAGATTTAGGGGTCTACATGTGTCTTCTCTAGAGGTCAGGGTACAGCGATGGTGACAGAAAGAATGATCGCAGATTATCCAGTCTATGACTGACGTCATGGGGTTCCTTAAGTACTTCCAGTAGTGACTCAAAAGCCAAAGAATCAATCACGTGGAATGTTTGGATGTTGTCGCACACAGAGCACTTTCCCCTTTGTCTGCAGTCtgtgtgcctctctctcccagtgcTGCAGACAGGCATGCAGTGTGTCCCTGCAGATTAGTCCCAACTGTGTTACCAGGTGGTGTCACTATTTAACAGTCCTCATCAACACCCACTATACTGGCTAGCTTGGCGCTCTCCATAAACTCTTGCTAGAAATCAAGTTTAGCTCTACTGGTACGCTGCATGCATTCACACTATAGTGGGCTTATAATTCTATAAGGGAGTCCCAAAAATCCGCAAGCTAAAATACGCTACAAAAGATAGGTGCATGtcaacaaacaaaacatttaactTTTATTTCTATGCAAAGAAAGATATTGCACAAACTTATGGGTTATTAAATGTAAAAATGATATCAGTATAAACATGGAACAAAAACCTTTGCGAATCAGACAACCTTTTGTATTCGGCCACTCCCACATCTCGTTTCATTTAGCTTCAAAGTACTGAACTAAAGAATGGAAAAGCATAATTGAATTCATATGTCCAAGTGAAAAGAACATCCTTTTACGTTTGTGGAATCAAAGGaaaatgttatttttgtgtgtttttccaCCAATCTAAGATGACATTTCTaatctgacatactgtatgtgcCGAGGCCTCAACAGGTTACTTTTCCAGGACTTTAGTTTCCAGcccagctgacagacagacagttggtgtGTTCCAGGTGCTGCCATAGCACTGGCATTGTGTAAACCTCCATATTAGTCATCATCTCGTGTCCCTATCAACACTGCATCATGTACAGTTGGACCGACGAATAAACTACTGAAGTATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306458 lncRNA downstream 14176 50531271 ~ 50531890 (-) True G269762
TU306456 lncRNA downstream 14866 50530954 ~ 50531200 (-) True G269761
TU306378 lncRNA downstream 127182 50418537 ~ 50418884 (-) True G269687
TU306350 lncRNA downstream 132896 50412651 ~ 50413170 (-) True pde11a
TU306371 lncRNA downstream 135168 50410694 ~ 50410898 (-) True G269680
TU306478 lncRNA upstream 15086 50600978 ~ 50605536 (-) True G269779
TU306518 lncRNA upstream 116354 50702246 ~ 50702996 (-) True G269817
TU306596 lncRNA upstream 192777 50778669 ~ 50778893 (-) True G269865
TU306597 lncRNA upstream 193259 50779151 ~ 50779357 (-) True G269866
TU306615 lncRNA upstream 245748 50831640 ~ 50833105 (-) True G269883
XM_021584410.2 mRNA downstream 2634 50542986 ~ 50543432 (-) True LOC110505276
XM_021597240.2 mRNA downstream 3778 50534079 ~ 50542288 (-) False LOC110520142
XM_021597242.2 mRNA downstream 3778 50534079 ~ 50542288 (-) False LOC110520142
XM_021597243.2 mRNA downstream 3778 50534079 ~ 50542288 (-) True LOC110520142
XM_021597241.2 mRNA downstream 3955 50534079 ~ 50542111 (-) False LOC110520142
XM_036974516.1 mRNA upstream 33129 50619021 ~ 50636522 (-) True LOC110520149
XM_021597256.2 mRNA upstream 66741 50652633 ~ 50665607 (-) True slc15a1a
XM_036974521.1 mRNA upstream 79903 50665795 ~ 50733423 (-) False LOC110520150
XM_036974524.1 mRNA upstream 79903 50665795 ~ 50733423 (-) False LOC110520150
XM_036974529.1 mRNA upstream 79903 50665795 ~ 50733423 (-) False LOC110520150
TU306341 other downstream 103194 50440205 ~ 50442872 (-) True LOC110520139
TU305117 other downstream 644528 49900173 ~ 49901538 (-) True LOC110520121
TU305027 other downstream 674421 49867217 ~ 49871645 (-) True LOC110520119
TU304905 other downstream 978592 49563848 ~ 49567474 (-) True LOC110520112
TU304903 other downstream 980077 49563848 ~ 49565989 (-) False LOC110520112
TU306786 other upstream 542548 51128440 ~ 51129310 (-) True LOC110520160
TU307414 other upstream 887432 51473324 ~ 51474139 (-) True fgf9
TU307458 other upstream 1011507 51597399 ~ 51599898 (-) False il1rl1
TU307459 other upstream 1012043 51597935 ~ 51600230 (-) True il1rl1
TU309282 other upstream 2122291 52708183 ~ 52708816 (-) True LOC110520182

Expression Profile