RNA id: XM_021597249.2


Basic Information

Item Value
RNA id XM_021597249.2
length 6611
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110520146
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50601983 ~ 50618761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAATCTAACTTTGACTTATTTTCCTAAGGAAAGAAGAATACGTTAATGTGGAGTATTACACTAAAGCTGTGTTCCCCTATAACTTTGTATAGTTACAAGCTGTTAGTAGGAATAGACGTGATGGGTACTAGCTGCATCAGCATTGGGCAACAGTGTTGCAGCCAGGGTAGAGAGAACTCATTCATAAAGAATGCTGTGATATCAGCCGTTGCCAGATAGAACCGTGACGTGTTATAATAAGGTTGATATAAGTAGGGAAATTTAACTTGTTTCAAAGCGCATAACTCTAGCTACTCTACACTCCAATTAGCATTGCCATTCATGTACTCGGCAATACATAAAATTGCATTTCTTCACTGCTGTAGCTAATACAAAGTTGAATTTCCAATATGGTAGAGAGGTTGTTGTTGTATAGTGGACTGTTGTCATGTCTCCGCAGTGCCTGTAGTGGTGCTGTGAGGAGTCTACTGTGGACTGAACTAAAATCCTCAGCAGCTCCCAACTGCTAATATTTGCTGTGGATAAACCTCATTTACATGCATCAGTATTTTCAATTATATTGTATTCGAATAGGAGCATTATTAGTATCCTAAAATATAGATTATCGATGCACAAATAGGCAAGCTGATTCTTCTGGCACTTCTACAGTCTTTCCGGAGTGAATACCCTACATAGCCTATACCAATTGAAGCTGATGTTCTCAAGGACAAGAGTCACGTGATGTATGAGGGCAAACACATCCACTTCTCGGAGGTGGACAATAAGCCATTGTGCTCATACAGCCCAAAGCTCTGCAAGCAGCGCAGGCTCAATGGCTATGCCTTCTGTATCCGTCATGTCCTGGAGGATAAGACTGCCCCCTTCAAGCAATGTGAATATGTGGCCAAGTACAACAGCCAACAGTGCACCAACCCCATCCCCAAGTCTGAGGACCGCAGATACTGTAACAGCCACCTCCAAGTTCTTGGGTTTATCCCCAAGAAGGAGCGGAAGAAGAAGCATGATACATTGGAGGAGATGCGCTCACGACCTCACCTGGAGTCAGTGGCTCTTAACATAACTGTGCCCTCGCTGGCCCTAAAGGCCTCCAACGGCCTGGACGAGCTGCCACCCTCTCCACCCTGCACCCGTCTCTTACCCCTCCCAGACGGGGAGATCCTGGACCCTTTTGCCTTTTATGAGGACGACACAAACGGGGAAGAGTGCGCTGCTCAGAAGGGCTCCGTTGTCAGGAAGAAACTACACAGTCGGCTGGTGCTCAGCCAGAAACTCCAGCTCCACCATCACGACACTGACTTTTTCCAACCACCTCTAGAGCACTTtagcccctctcctcttccccgtgtgcacccctcctcacccctccacccTCACCTCCCCCGTAAACAGCAGACAGGACTCCTCCAGCCCCCCCAGCACTCCACCATGCCCTCGTTTGTCCTCCCAGGACAGCAGCAGGGTTTTTTATGCAAGCCAGCTCCACCTCAGACTCCCGCCTTTCTGCCTGTCGGGCTGCCCCCCAACACGGCTCCCAGTCAGGTGCAGTCCTCCGGTCCCCCCCTCAGCAGGAAAGCTCTGTTCACTGCCACGCCCTTGCCATCCAGTAGCTGGGACAGCACTCAGCGGCATATGGTGGCCATGCGCCCAGCTGCCTTCTCACCTCCCCCTGCCTGCCTGGCCAGGTTACAGCATCTGGTACAGCTCTGCGCCCAAAGACATCAGGAGCAGGGAGACCTTTTCCCTCATCTAGGGTTGGACTGGTCTGAAGACAGTGCAGAGGATGATGACGTGGAGGCCGAGAGAGTTCCACCATATCACAACGCCTGGAGACTACaggaaggacacacacaggacGTCTCTGATGAAGATGCCGGTAGCTCTCGGAGAACACGTCTGGCGCGGCTGTGCTCGTACCTCCAGGATAAATACAAGCACTTGTGCAGGCAGGAGAGGGCAACCATGCGCCAGAAGAGATACCGCTATGCCTTCCGCAAAGCCCTGCTGCATGCTGCCAGTAAAGACCCTGACTGTGCTGGCCAGTTGATCCAGGAGCTGCGCAAGGTCTCCCAGACCTCGTCAAGtgCGCTGGGGCAGCAGGAGACAGAGGCGGGAATCTGCACTGGAAGCACCAAGGGCCGGGCCTGCACTAGCCAAGCTCTACCCTTCACCCGACACTGCTTCCAGCACGTTCTGTTGAATCGCTCCCAGCAGCTCTTCTCCAGTTGCACAGCCAAATTTGCAGATGGACAACAATGCTCCATCCCTGTGTTTGACATCACGCATCAGACACCGCTCTGTGAGGAGCATGCCAAAAAGATGGACAATTTCCTGCGTGGGGATGGGAACAGAAGAGTGCAGcaccagcaacagcagcagcagcggaaGCCGCGGAAGAAGAGCAAACCGCCGGCGCTCACCAAGAAACAcaaaaagaagaggaggagagggccatGGCGGCCCCAAAAGCCCATCCCGCCGGCTCTGCCCCAGGGGAACTTGGGAATGCCTTCCTCCTCCAGCCTGACCATGCCCACCCAGGCTAGCATCAGGAGTCCTTCGACGCCCGAACTGAGCACTGATGAGCTTCCTGATGACATCACCAATGACATGGCAGACATTCCAAACGACCTCGAGCTGAACCAGGAAGACTTCTCGGACGTATTACCCAGGCTCCCCGATGACCTGCAGGACTTTGACTTGTTTGAAGGTAAAAATGGGGAGCTGCTACCCACCACGGAGGAGGCTGAAGAGCTGGTGCGAGCACTGCAGGCTGGGCTGATGGGCTCCTACCCAGACTCCCTGGTGTGCCTGACCTCCATGGCGGAGATGGCGCAGGCAGATGGAGTGGACCATCGGGTCATGGCAGGAGTGTTTCCTGGGCCAGGGGTCCAGCCGGGTGGGATTGGGGACCTGCTCAATGGCCGCATCCCCCCAGAGAACTTCTCCAGCCTGGAGCTGGAGGACAACCTGCTGCACTCTGCTGGAGGCCACTTCTCCTCTGCGGTGTCACCTCAGCAGCCCCAGGGCCAGGCCCCCCCCCCTGGGCCTAGCCTCACCACCCCCACAGTCGCACAGAGCCCCCTGTCAGAGCGAACGTTCCCCCGGACACACCAGCCCAACATCCTGGCCAAGCCTGAAGTGCCCACCTCGTCTCCACAGGGCAGCCATTACAGCAGCGAGCATGTGCCATCCCCCTATAGTGACCACATGTCCTCCCCCCATGCCACCTCCTTCCAGACAGAGACTCCTCTCCTTGTGGAGGTCCCTCTGAGCGGGGTACCAGGCCCCCCGCAGTCCTCCTGGAACAACCTCCACCTGCCCCTCACTGACCCCACACAGTTTGGCAACCTCATCAGACCTGAGGGCCATCTCATATCCACCTCTCTttccactcccccctcctccacctcccactCTGTGACCCTGCAGCCCATGGCTGCCCTCTCAGCGATCCCCCAGAGCGGCCTGACGGGCTTGACTGCTCCCCCCAACCCCTCACCACGCGACCTCCTGACCTCCACCCAGTCCAAGCAGCAGCTCCCTCAGTTCAGCGCTGCCTTTGGCCACCAGCTGGCCTCCCACAGTGGCATCCCCAAGGACGTGCAGCCCAGTCACAGCTCCACGGCGCCCCCCACTGGCTTCTCCATAGCTAGTGCCACCGCTGCAAGTGCCAACAGTGCAACACCCCCTTTTCCACACAGTGACTGAGAGCGAGCCGGTCAAACCATGGACTCTAGACACTCATTCACCCACAGTCGATGCATTTTCCATCTACTTCAAGTGTGAAATGTGGTAACGGTGCACTATACTATCTGAATTTCCACAACCTCAGATATTCCTTAACTGTAATGATTTGGTGATGTTATAGCCATTTGGCCATCTGAAAGGGTATGCAAGAGTCCAGTGGTTTGATGTGAATGCCGCTCGAGGGTATCACCAGCAGGGGGAGATGTTGGGCAGCGTttgtatggagggagggaggtcccTCAGTTGAAACATGGACTCACTTGGAGGAACATTGGAGGAAGTACCTTTTAGGAGCGATTATTCCTATCATAGTGACCGCATCAGTGCTAGAGAATTCTATGACAAAGCCTCAATCAgtggtctgttttttttttttttttttttttttgtatcgcCAGTTTAGTCCTGTCTTAAGTCTTCAACTATAACCTGCCTTGCTATGATCATTGCATCGCCTCATCTGTTCCTCATTCCATTCACCTTTGAAAGAGATTCTAGGGTAGATCCTTTGTAGGCATCTGTGTGTGACCCATTATGAAGCAACAGAGGAAATTGCTCTGTCGAATATCATGAAGTAGACTTATCTCCTCCCACGACTTAACAGACACAGAATTTGGCCGAACCATTTTTAAACAGCTTTTTTTTATATTGTGTATATATTTGGTATTTTATCGGTTTACTCAAATGTAAAAGGTCTTTTGACCTCACCATTCTTTGGGGAACTCCTTACGGGTGGCCTATTAGACACTTGAAGGTAAATCTTGTTACTTTAAGCAATAAACACATTGCCATACTCGGTCACAGTcgtgtaatgtattgtattagtCTTCACTTTATGTATCTTCATTATGTAATCCATACCAATGTGGACCAGAAATATTTTGGGGCCTGTATAACTCCTGTGTCATAAACAGTTTGTTCTAAATCAAGGCTAAACTGTTTGAGTAGAGATATAGACTGTCTGTAACTGAACAGGAGCCAGCTtgccaaaagcatcttaaggctataAGTTAATTGTTAGGATCCTATAgttctaacgatgaacttagccttaagatgcttttgggaaaccgggcccaggtcAGGAAGCTTCTCTTGGGTCATACTTAGTTTCACATAGCGAAGGGAAAAAGGGTCAATGTTATTGCGAGGGTAATGGCCATATCTAGGGGCTTTATTGTCCGCAACTCTCCATGGTGCTCTCTGGTCTTGCTAAATAATGGCGTTTTTATTGGGACATGCATGCATGTGGTCCCTGCTAAGAGAGAAGCTCTCTACTTCAGGAACCCAGTGGGGGGGAAATGGTTCTCTTCAATATCAGAACTCATTCAGTAAAGGACCAGAATGTTGTCTTTCACTAGTCTAGCAGTGTATATGGATACAGTGGATGTGTATATGGATGTGAAATTATGGCCCCCTTGTTTAACCCTCTGTTAGCTGTCTGTGGTAGTGACACCATTGATGTAAACTGGTGCAATGAGCATTTGAGGTATAGCACTGTCTGTTGTAATACAAAATGATTATCAGGTGAATTAAGGTCAATGAAGCATGGGTCTCTGTTAACTGTTTGGTTAGGGAATGAGGATGGACTCTACCTGACAACTCTGTCCTATCTGCTTTTAATAACCCTTATTACAGCAGTAAACCATGAGGTtcggtatatatttttttaactgaaaGATACTCAGTGTTAAGTATTAGATATATTTGTAGGGTAGAAATCTCTACAGTGGGTTTTATTGGTGAGTTAACGAGTTGCAATGGATTGAAAATGaagtaaaacaaaaaataaaaaaaatcttgcCATTTGCAAAGTGCTTGATGGAAACCTTTCTCTTGTTTTAATGGCTAGCAGAACTCTTCATTTATCTGAAGTGGAATGATCGCTGTTTCTGTACACTGTCAATTATAAGACAATGTCTATAATTATGTAAGACAGTCATTTTGATAGCTATTACATTCTGGCAAGCATTTGCTGCTGAAAGACTGGGATTGCATGGAGAGACAACCTGACAGCTGAGTGCAAAGCCACAACATTTCTCCCTCATTTACTACTGGATCACTCTAGAGAGCAGTAAATCCAACCATAGCGTTGCATACCATTTGAacctttttttacattttctttgcAAGTACTACGGATATACATAACAGCACCTGTAATCAGTTTGGATTTGGAGGACATCGCTGACCTGCTCTAAACAGGACTGAGAGGCCAGAGATTCACCTAGTAGGCATCTTGCATTTTGTCAGGATACTGATTACTAACAGCTGTCAACTGCACACACATATTTTTAAGACCTGAGCAGGCCCCAATTCCAACTGAAGGCCTAGTTCTTTCTCCCAGTTCCAAAGAGACACATTACCAGAGCAGACTCAAGTTTGTTTCTTTTGCTTGACCACCCCATTGTTGTTCCTAGATGTACAGCCCCTAGGAATTAGGTGGGCTGGAAAGTGGTCTTGAATTTGCGCAAGCAAGGCGATACTGCTGTATTCACAAAGCATGAGATGAGAGACATTGCACAGCTAGACTCCCCACCAACGATATAGATCCAACTCCACGGGGCGCTTGAAATCTGAGAGATTGGCTGACAAATTCCTATACTCAttgaatgtactgtattactgttttTAAACATGATAGGATGAGCTAATAATAATCTAGTCACCTTTTATTGGTCCTTGTTTAATTTGTCTAAGGTATTTTTTTGTATACAAAGGTTTACATTTTTATGTATATTTTTCTTGTGTACAAATGATGTAATATGTGTATAAACACTGTATGTAATATCTGTATATAGTGTGATAATTTGATCTGTTTTTTGGATGTATAAATAAAACTTGCTGTGAGGTATTCGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305736 lncRNA upstream 71043 50527538 ~ 50530940 (+) True G269085
TU305624 lncRNA upstream 158972 50440203 ~ 50443011 (+) True G268989
TU305623 lncRNA upstream 160748 50440203 ~ 50441235 (+) False G268989
TU305672 lncRNA upstream 186440 50415338 ~ 50415543 (+) True G269022
TU305669 lncRNA upstream 191733 50410023 ~ 50410250 (+) True G269019
TU305784 lncRNA downstream 26232 50644993 ~ 50645192 (+) True G269126
TU305888 lncRNA downstream 168810 50787571 ~ 50788102 (+) False G269223
TU305885 lncRNA downstream 168992 50787753 ~ 50788258 (+) False G269223
TU305886 lncRNA downstream 168992 50787753 ~ 50788161 (+) False G269223
TU305887 lncRNA downstream 168992 50787753 ~ 50788102 (+) True G269223
XM_021597253.2 mRNA upstream 328 50595616 ~ 50601655 (+) True LOC110520148
XM_021597247.2 mRNA upstream 9678 50588958 ~ 50592305 (+) True gpr1
XM_036974482.1 mRNA upstream 82118 50455039 ~ 50519865 (+) False osbpl6
XM_021597281.2 mRNA downstream 339253 50958014 ~ 50959445 (+) True LOC110520157
XM_036974548.1 mRNA downstream 446413 51065174 ~ 51110275 (+) False uggt2
XM_036974549.1 mRNA downstream 446413 51065174 ~ 51110275 (+) False uggt2
XM_036974550.1 mRNA downstream 446413 51065174 ~ 51110275 (+) False uggt2
XM_036974551.1 mRNA downstream 446413 51065174 ~ 51110275 (+) True uggt2
TU305367 other upstream 418957 50162301 ~ 50183026 (+) True hoxd3a
TU303972 other upstream 746481 49836617 ~ 49855502 (+) True G267529
TU303803 other upstream 1046145 49554498 ~ 49555838 (+) True G267381
TU303780 other upstream 1089508 49510803 ~ 49512475 (+) True G267358
TU300305 other upstream 3769779 46831008 ~ 46832204 (+) True LOC110520046
TU305958 other downstream 279828 50898589 ~ 50900277 (+) True G269291
TU307177 other downstream 955219 51573980 ~ 51578683 (+) False LOC110520169
TU308945 other downstream 2548191 53166952 ~ 53172428 (+) True acvr2aa
TU309190 other downstream 2602666 53221427 ~ 53223265 (+) True LOC110520187
TU309244 other downstream 2672569 53291330 ~ 53336526 (+) False LOC110520190

Expression Profile