RNA id: XM_021597256.2


Basic Information

Item Value
RNA id XM_021597256.2
length 2801
RNA type mRNA
GC content 0.45
exon number 23
gene id slc15a1a
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50652633 ~ 50665607 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTGGGATACCATTCCAGGGTCGTGCCTCCTAGTCTTAGAGGCAGGAATCACTGTGTTAGCCTGGAAGGGATAACCTAAGGATACTAAACATTACAGGACGAAGAACAGTCTCTATACACTGCCATCATGACAGATGAAGAGGATGTTAAGAAGAGCAAGTCAAAGGAGGTATGTGGCTATCCCCTAAGCATATTCTTCATTGTTGTAAATGAGTTCTGCGAGAGATTCTCCTACTATGGCATGCGAGCTGTGCTGGTGCTGTACTTCAGGTACTTCCTTCGGTTTGATGATGACCTGGCCACCTCCATCTACCACACCTTCGTGGCTCTGTGCTACCTGACTCCCATCCTGGGAGCCATTGTAGCAGACTCCTGGTTGGGCAAGTTTAAGACTATCATCTACTTGTCCATTGTCTATGCAATTGGCCAGGTTGTGATGGCGGTCAGCGCCATTCATGACATCACGGACACAGACAGAGATGGCACGCCAGACAACTTGACCTTGCATATTGTGCTGTCCATGGTGGGCCTGCTCCTCATTGCGCTGGGTACAGGTGGTATCAAACCATGTGTTGCTGCTTTTGGAGGAGACCAGTTTCAGGACCACCAGGCAAAACAGAGGAGCACTTTCTTCTCGGTTTTCTACCTGTGTATCAATGGTGGGAGTCTCCTGTCTACTATCATTACACCAATCCTCAGAGGCCAGGAGTGTGGCATCCACAGCCAGCAGAAGTGTTACCCTCTGGCCTTCGGTGTCCCTGCTGCGCTCATGGTGGTCGCCCTTGTTGTGTTCATAATTGGAAGTGGTATGTACCATAAGACTGAACCGCAGGGAAACATAATGCTGGATGTGTGTAAATGTATTGGGTTTGCAATAAAGAACCGCTTCAGGCACAGGAGTAGCTCCTACCCGAAGAGAATGCACTGGATGGACTGGGCCGAAGAGAAACACGAGAAACTCCTCATTGCTCAGATAAAGATGGTGCTGAAGGTCCTATTTCTGTACATTCCCCTTCCAATGTTTTGGACCCTATTTGACCAAAAGGGCTCTAGGTGGACTCTTCAGGCCACCACTATGGATGGGAACTTTGGATCACTCATTCTGCAGCCTGATCAAATGCAGACTGTCAACCCTATCCTGATCCTGACTCTGGTACCGATCATGGACAGTGTGGTGTACCCATTGATAAAGAAATGTGGCCTGAACTTCACTCCTTTGAGGAGAATGACAGTGGGTATGTTTTTGGCAGCCATGGCCTTTGTTGCCGCAGCTTTGGTACAGATCCAGATTGATAAAACCTTGCCAACCTTCCCATCATCCTCCCAGAGCCAATTAAAATTACTCAACATGGGCAGTATCCCCCTGACAGTTACCTTACCCAATAACGATCCATTCGTCATTGAAGCAGCTACGGCTAGTGCAAATTACCTTACATTTGAGGAAGAAAGCATCCAAGTTTCATTTCAGAGTCCTGCAATATCTAGGACTATTTCCTTAGCAAAGAACAAGCGGCAAACACTTCTAATTCCCTCAAACCTCAGTGCCCCAATGTGGGAGGTGACTGATGATGTGATGGCAAAGCCAGAGCAAGGGGCCAATGCAATCAGATTTGTTAATGGTATGGCTGGAGCGGTGAATGTGTCAACCTTTGGAAGCATTGACTACTCCTCTGCTTCCAACTACTCTCTCATATCAAATGGAAAAGCCACCTTCACCATAACCAATGGTGCGAACACTTGTGAATACTCCAGAGAATTTGGATTTGGGAGTTCTTACACTCTGCTTATCCCCAGTCATTTTGTATGGGGCCCGACTTGCTCGGAATCCATTTCTGGGGTTGAGGATATCCAGCCCAACTCCTTCCATATGGGCTGGCAGATCCCACAGTACTTCCTCATTACCTGtggagaggtggtgttctctgttaCTGGCCTGGAGTTCTCTTATTCCCAGGCACCGAGCAACATGAAGGCAGTGCTACAAGCAGGCTGGCTGTTCACTGTAGCTATTGGCAACTTTATTGTCCTTATTGTGGCTGAGATTGCACAGATCGAAGAACAGTGGGCAGAGTTTGTCCTCTTCGCCTCCCTCCTAGTGGCAGTGTGTGTCATCTTCTCCATCATGGCCTATTTCTATACCTACATGGACCCTGCAGAGATCGAGGCCCAGTTCAGGGACAAAGATGGTACGGAGGAATCAGACAAAGAGGAGCTTCAAATGCAGAAGAAAGATTTCGTAGACCATCACAATGAAGATGATGAAGCCAAACAATCAAAAATGTAAATttgcataagtgtgtgtgtgtgtgtgtgtgtgtgttgcgtgtgtgttgcgtgtgtgttgcgtgtgtgttgcgtgtgtgttgcgtgtgtgtgtgagcgagagaaagagactgagtgaaagagagaaggggcaagagaaagaaagaacatGAATACcaattgtattatattatagtttTGATATGCACAAAATAACTGCTCCAAGTATGGTGCAGAGAGGGAAAAGGACATTTTTACTACATTTAAATACACTTAAATTCCAGACTTGTTTTAAGCTTTCGGCTGTGAgagaaaacaacaaaacattacaaaTGGAACaatctgttttaaaaaaaaactgtcaaaCATCCCAATGTCCATCGATCAGGATTCATTTTGCATGATTATACTGTATAGGTTGCATTGTTATTAATATAGAAGTTAGTGTGTATTAATAAAAAGCAAGATTTTCTAAACATTTAATTATATAACTGGAAAACAAATCTGTCATTGCTTAAATAAACATGAAAAAGACACA

Function

GO:

id name namespace
GO:0006857 oligopeptide transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14206 SLC15A1, PEPT1; solute carrier family 15 (oligopeptide transporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306478 lncRNA downstream 47097 50600978 ~ 50605536 (-) True G269779
TU306458 lncRNA downstream 120743 50531271 ~ 50531890 (-) True G269762
TU306456 lncRNA downstream 121433 50530954 ~ 50531200 (-) True G269761
TU306378 lncRNA downstream 233749 50418537 ~ 50418884 (-) True G269687
TU306350 lncRNA downstream 239463 50412651 ~ 50413170 (-) True pde11a
TU306518 lncRNA upstream 36639 50702246 ~ 50702996 (-) True G269817
TU306596 lncRNA upstream 113062 50778669 ~ 50778893 (-) True G269865
TU306597 lncRNA upstream 113544 50779151 ~ 50779357 (-) True G269866
TU306615 lncRNA upstream 166033 50831640 ~ 50833105 (-) True G269883
TU306640 lncRNA upstream 207994 50873601 ~ 50873941 (-) True G269908
XM_036974516.1 mRNA downstream 16111 50619021 ~ 50636522 (-) True LOC110520149
XM_036974503.1 mRNA downstream 66738 50546066 ~ 50585895 (-) True LOC110520143
XM_036974508.1 mRNA downstream 66740 50546066 ~ 50585893 (-) False LOC110520143
XR_002472947.2 mRNA downstream 66740 50546066 ~ 50585893 (-) False LOC110520143
XR_002472948.2 mRNA downstream 66740 50546066 ~ 50585893 (-) False LOC110520143
XM_036974521.1 mRNA upstream 188 50665795 ~ 50733423 (-) False LOC110520150
XM_036974524.1 mRNA upstream 188 50665795 ~ 50733423 (-) False LOC110520150
XM_036974529.1 mRNA upstream 188 50665795 ~ 50733423 (-) False LOC110520150
XM_036974517.1 mRNA upstream 188 50665795 ~ 50744931 (-) False LOC110520150
XM_036974518.1 mRNA upstream 188 50665795 ~ 50744931 (-) False LOC110520150
TU306341 other downstream 209761 50440205 ~ 50442872 (-) True LOC110520139
TU305117 other downstream 751095 49900173 ~ 49901538 (-) True LOC110520121
TU305027 other downstream 780988 49867217 ~ 49871645 (-) True LOC110520119
TU304905 other downstream 1085159 49563848 ~ 49567474 (-) True LOC110520112
TU304903 other downstream 1086644 49563848 ~ 49565989 (-) False LOC110520112
TU306786 other upstream 462833 51128440 ~ 51129310 (-) True LOC110520160
TU307414 other upstream 807717 51473324 ~ 51474139 (-) True fgf9
TU307458 other upstream 931792 51597399 ~ 51599898 (-) False il1rl1
TU307459 other upstream 932328 51597935 ~ 51600230 (-) True il1rl1
TU309282 other upstream 2042576 52708183 ~ 52708816 (-) True LOC110520182

Expression Profile