RNA id: XM_036974541.1


Basic Information

Item Value
RNA id XM_036974541.1
length 4656
RNA type mRNA
GC content 0.51
exon number 27
gene id farp1
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50788788 ~ 50896282 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACAGCTAGATGGAGCTATGTGGCTGTAGCATTTCTTTGGCAAGGATTGCCTTGCAAGTAGGTGCAATTCCTTGCACAATAGCTGGAGGCACTGTGCCTCATTTATTGTTGGAGTAACAAGCCAAGAGAGGATCTGCCGCTGGTTTCAATGTAATCCTGTCTCTCCCCGCACACAGTCGTCCGACATGGCGACCATGAAGAAGCTTCTCGGCGGTACAACCAGCATCTGAACTCCATTTGGCTCCACGCAAGCAGCCTGAACTGCGTCTGGAAGTGGATGTAAAATATTTTGTAAATTGGGAATTATACACGTGGATTATCCACATTTTAAAAAAAGGGCTGTACGGTAGCACAACAGAGCACCATGGTGGAGCCTGAGCACAGAGCATCAGCAGCCCAGCGTCTTGGAGCCCAGGAGACCCTGGGCATCAGCACCCTGGACCCTGGCCACCGGCCTCCAACAATGCCCCCTGGACGCCACGTCTCCATTAAGATACGCATGTTGGACGACACAGAAGAGGTCTTCGACGTCTCGCAAAGAGCCTCTGGCAAGGTGGTGTTTGACCTGGTGTGTACCCACCTGAACCTCGTTGAAGGGGACTACTTCAGCCTAGAGTACCAAGACCACCACAAGATGATGGTTTGGCTAGACCTCCTTAAGCCAATAGTCAAGCAGCTGAGACGGCCCAAGCACACAGTCCTGCGATTTGTGGTGAAGTTTTTCCCCCCTGACCACACCCAACTACTGGAGGAACTGACTAGGTACCTCTTCGCCCTGCAAGTCAAGCATGACCTTGCCTGTGGACGTCTGGCCTGCAACGACAGTAGCGCGGCCCTGCTGGTCTCCCATATTATCCAGTCTGAGATTGGGGACTTTGAGGAGAGCCAGAGTCGGCAGCACCTCCTCAACAACAGCTACATTCCAGACCAGGTGGCTCTGATCGACAGGATCATGGAGTTCCACTCCAAGAATGTGGGTCAGACGCCAGCAGAGTCGGACTACCAGCTGCTGGAGGTGGCACGCAGGCTGGAGCTGTACGGAGTGAGACTGCATCCTGCCAAGGACCGCGAGGGCAGCAAGCTGAGCCTGGCCGTGGCGCACACTGGTGTCCTGGTCTTTCAGGGACACACCAAGATCAATGCCTTCAACTGGTCCAAAGTGCGCAAATTGAGCTTCAAACGGAAGCGGTTTCTCATCAAGCTCAGGCCAGACCTGAACCAGAGCTCTTACCAGGACACTCTGGAGTTCCTGATGGGTAGCAGGGACTGCTGTAAAGTCTTCTGGAAGATCTGTGTGGAATACCACGCCTTTTTCCGCCTCTTCGAGGAGCCCAAACCCAAACCCAAGCCTGTCCTCTTCACCCGaggctcctccttcagattcagCGGTCGGACCCAGAAGCAGGTGATTGATTACGTGAAGGATTCTGAGTTTAAGAAGATTCCCTTTGAAAGGAAACACAGCCGGGTCCAGCACAGCAGCAGCCGTCTGTCTCCACTGCCTTCCCCGCACCGCCCTCAAGTGCCAAAAGAAAGTGTGAGCCGTGCTCCAGGAGACATAGTGGACTCTCCGCCACGCCGTCACTGGAAGGAGTCCGTGTTGGTGAGCGCCGAAGACCCATCGGCCCTGCGGACCAGAAGCAGCCCCTCCAGCCAGAGGAATGGGGCACACAGCGAGGAAAGGCCAGGCCCCGGGGCAGAACCAGGCCCAGCCAGGCAGCCCCACCCAGAACATCTGAACACAGGAGTGGTGTCCAACagcccccatctctctgtctcctccggTAACTCCCAGGGCATGGTCAATGGTCAGAAGCCGGTCGAGCTCTGTGGTCACAGTCCGGACGGTCGGCAGCCCTCCCCCCTTACCAGCCCCCTGCTCAACGATGCCGGAAGCGTGCGCACCGACGATGAAGACGAGAGATTCCCCACCGACAAGGCCTACTTTATTGCCAAGGAGCTGTTGACCACAGAGAGGACCTATCTGAAGGACCTGGAGGTCGTGACTGTGTCTTTTCAGAACTTGGTGGGAAAAGATGACGCTGCACCGGACTCCCTGAAGAGCACCATCTTCTCCAACTTTGACCCTCTGTACAAGTTCCACTCCGGCTTCCTCAGAGAGGTGGAGCAGAGACTGGCTCTATGggAAGGGCGCTCCAATGCCCACATTAAAGGAGATTACCAGCGCATCGGTGATGTCATGCTGAAGAATCTACAGGGCCTGAAGCCGCTGACTGCCCACCTCCAGAAGCACTCGGAGGCCCTGGTGGAGCTGGAGAAGGCATGCCGGGGCTCCCGGCGGCTGGAGGTGCTGGTCCGGGACTTTGAGCTGCAGAAGGTGTGCTACATCCCTCTCAACGTGTTCATCCTCAGGCCCCTGCACCGCCTCTTGCATTACAAGCAGATCCTGGAGCGTCTGTGCAAACACTACCCCCCCACACACGTGGATTTCAGGGACTGCAGAGCCGCGCTGGCGGACGTGTCAGAGGTGGTGGCCCAGCTCCACGGCAGCATGATCAAGATGGAGAACTTCCAGAAGCTTCTGGAGCTTAAGAAGGATTTGATTGGCATCGACAGTCTAGTCACTCCAGGGCGGGAGTTCATCCGGCTAGGCTGTCTCAGCAAGCTGTCTGGAAAAGGCCTCCAGCAACGAATGTTTTTCCTGTTCAATGATGTCCTCTTGTATACGAGTCGAGGAATGACGGCGACGAACCAGTTCAAAGTGCATGGGCAGCTCCCTCTCCACGACATGACAATCCGGGAGAGCGAGGACGAGTGGGGTGTGCCTCACGCCTTCACCCTGGTTGGGCAGCGTCAGTCAGTGGTGGTAGCAGCTAGTTCCCTGTCAGAGATGGAGAAGTGGATGGAGGACATTAAGATGGCCATTGACTTGGCAGAGACCAGCAACGGCCACACGGCTGACCTGCTGGCCAGAAGTCTGACTGATAACAAATCCACAACAGAGGACTCCTGTGCGGAGGCGGAGTCTGAGGACGACCTGATGGCGTCACGCACCTCCCTGGAGAGGCAGGCCCCTCACCGTGGTAACACCACGGTGCACGTGTGCTGGCACAGGAACACCAGCGTGTCCATGGTGGACTTTAGCATAGCTGTGGAGAATCAGCTGTCAGGAAACCTGCTGAGGAAGTTCAAGAACAGCAACGGCTGGCAGAAACTCTGGGTGGTCTTCACCAACTTCAGCCTGTTCTTCTACAAGACCCACCAGgaTGATTATCCTCTGGCCAGTCTCCCCCTGTTGGGCTACTCGGTCACCATCCCCACTGAGTCTGAAAACATCCACAAGGACTATGTCTTCAAACTGCATTTCAAATCCCACGTCTACTACTTCAGATCTGAGAGCGAATACACTTTTGAGAGGTGGATGGAGGTCATTCGCAGTGCCACCGTCTCTGCCAGCAGCACCCGCATTCTGAGCCGGAAAGAGCCCCATCCGTACTGATCCAAAGAGCAAgggctctctccctgtctccatgcCTCTTCTCCCTACCACAAATCTCCCATAGGGTCTGGCCACATCTAGCCTCTCATCACACTACAACTCCCCAAGCAGCAAGCTGAAGCAGAGCCCCTCTGGCGCCACATTCACTTCACTTCTCTGGACACTCTTGATTTCCTTTTCTACACATATCTGGGACATATGTACATTGAGCAGTGTCCATGCACAATCTTGGTGCTTTTTAATGCTTTAATGGTGACATGTCCGCTGGTTTAGACTGCATCAGAGACTGCATTTTCAGCATTTTTACTCAGCTCTGAACCTCTTTTTGTAGGATGCCATTTTATACTGTTTTCTAACGGGCTGAATCACTTACTGTACTTCTGGTTTCACATTCTGTCATTGGATTGTTTTTATGGTGGGAACATGTTGATACAGAGATTCTgcattttaaaactttttttttcatAGATGGTTAGAATATCACTGCATCCTCAAGATTTTTGTCTCCTTGTTTACTTTATGGGGgaaaataataatgaaaaaaatgataataaaaAAGTGCCAAACAGTTTAACCATTTTCCTACACTTTTAATGCAATTTTACTACATTGGTGGTGAGGAGACTTGAAATGTGTtgtaagaaaaaaagaaaaaaaaagtcacATTAAATTCCATTTTTCTTTTAATAAGATGTCTCTGGACAGTGAGAGACCTTGTGATAAGTAAGATATCAGAATATTTTGTTGTATCATCGACTTAACTCTAGAACTACTTATAAAGCTATCAGGGTAGTTACCATCACCACTAACGCCATTATTCAAGTGAAGTGAATATTCCTGTTATGCTTTGTTGTGAGGATACTTCAGAGGGTGTTCTGAAGACTATTATATTCCACCCTCAATTGTGTGAGAAATGTGAGATGTTCATAATCTGTGTATTATGAAGGAAACTGTAATGGAAAGCTTTAAAGAATATGTGTGAAACAAAATCTAAACTTTCAGTTCCAAGCACCATTGCCCTTGTTGGACTAGGCTGCCTCCCATATGTAAAGAGACCTTTACAAGTCTAAATTAAATGGATATATGCATATGACAGAGAGGGAAAACTTTGGTTTTCCTTATTGAGGGAATGCTGTGTTTTCCCAGACACCAGAGAGCGCTTTGGAAATGAAAGCAATAAAAACCTAATTTGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306597 lncRNA downstream 9431 50779151 ~ 50779357 (-) True G269866
TU306596 lncRNA downstream 9895 50778669 ~ 50778893 (-) True G269865
TU306518 lncRNA downstream 85792 50702246 ~ 50702996 (-) True G269817
TU306478 lncRNA downstream 183252 50600978 ~ 50605536 (-) True G269779
TU306458 lncRNA downstream 256898 50531271 ~ 50531890 (-) True G269762
TU306640 lncRNA upstream 3522 50873601 ~ 50873941 (-) True G269908
TU306651 lncRNA upstream 21958 50892037 ~ 50892283 (-) True G269919
TU306652 lncRNA upstream 22582 50892661 ~ 50892890 (-) True G269920
TU306576 lncRNA upstream 23196 50893275 ~ 50894490 (-) True G269845
TU306578 lncRNA upstream 25157 50895236 ~ 50895829 (-) True G269847
XM_036974520.1 mRNA downstream 567 50665795 ~ 50788221 (-) False LOC110520150
XM_036974525.1 mRNA downstream 568 50665795 ~ 50788220 (-) False LOC110520150
XM_036974532.1 mRNA downstream 568 50665795 ~ 50788220 (-) False LOC110520150
XM_036974523.1 mRNA downstream 43837 50669497 ~ 50744951 (-) True LOC110520150
XM_036974518.1 mRNA downstream 43857 50665795 ~ 50744931 (-) False LOC110520150
XM_021597258.2 mRNA upstream 28478 50898557 ~ 50911701 (-) True LOC110520154
XM_021597270.2 mRNA upstream 43092 50913171 ~ 50949411 (-) False LOC110520155
XM_021597272.2 mRNA upstream 43092 50913171 ~ 50949411 (-) False LOC110520155
XM_021597274.2 mRNA upstream 43092 50913171 ~ 50949411 (-) False LOC110520155
XM_021597277.2 mRNA upstream 43092 50913171 ~ 50949411 (-) False LOC110520155
TU306341 other downstream 345916 50440205 ~ 50442872 (-) True LOC110520139
TU305117 other downstream 887250 49900173 ~ 49901538 (-) True LOC110520121
TU305027 other downstream 917143 49867217 ~ 49871645 (-) True LOC110520119
TU304905 other downstream 1221314 49563848 ~ 49567474 (-) True LOC110520112
TU304903 other downstream 1222799 49563848 ~ 49565989 (-) False LOC110520112
TU306786 other upstream 258361 51128440 ~ 51129310 (-) True LOC110520160
TU307414 other upstream 603245 51473324 ~ 51474139 (-) True fgf9
TU307458 other upstream 727320 51597399 ~ 51599898 (-) False il1rl1
TU307459 other upstream 727856 51597935 ~ 51600230 (-) True il1rl1
TU309282 other upstream 1838104 52708183 ~ 52708816 (-) True LOC110520182

Expression Profile