RNA id: XM_021597261.2


Basic Information

Item Value
RNA id XM_021597261.2
length 5244
RNA type mRNA
GC content 0.41
exon number 10
gene id LOC110520155
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50912625 ~ 50951028 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCGTAGAGCGAGCTGTCAAATGCTTGTTGCTTGTTGTGTCAAATCCGTGCTAGCTACAAAGTAACGAAGATAAATCAAACACCCAGTTACTTTCTTCTGAAAGTGGTTATAGCTCATCTATAGCTAGGTAATACGACAATAATTAAATCGACCGTTGAAGGTTGAACAGCACCTGTCCTCTCCACATTTGGTTTTTCTCTGTTCCATGGTGCTTTCTACCCTGGCTGCGTGACTGGTGGCTTGCGCTGGGGAACGAGTCGTCCTGATGATGAGATCACCAACAGAAAGTGCCTTTCAGACAACATCTCCAACTTGAACCTGCTCTGTGGTCCATATGTGCATGGAAAGCCAACGCTCCCTTTAAGGCCAGGTCTGAGCTGTGACAGGGGATACCTCAGCTGCAAATCTTCAGTAGCCTCCAATTCATTTCTGAACAACTCAAGTGACAAAGAAATCCAAGAGGAAAGCATTATTGTGGAGAGGAGAACTGTCAAAGCACAAAGAGCTGACAAATTAGAAGTTGGCAAAGTCAATACCAAGCACATCTTCGTTAATATTCTATCAACGAGCTCCATTGCCTTGAAATACTATTGTTGAGAGTGTTCTtgtcagtggaggaggagagacactTGGGGGTGTCACAGAGCAAGCCCCTCAACCTTTTCAGAGGTCTGCCATAGGTGCAAACTGATTGAGTGATTGATCATTAATCGATTAGCCTTCCTCCCAGCTTATGATGCGAGGGCCTGTCTAGTTGCTACATATGATTTGAGAACTTTTCAAACACAAATAAAACAGAGCCAAAAGTTGTGAACTTTTTTACGTGAGGCCATTTTTTATTTAGAGTCAACCGATATATTGAACTTTCAGCGTTCAATTGGAACCTCTTAACATGGCTCTGAATATATCTTCGATAAGAGACACAAAATGGCTGACATTGGAAGTTTGTCGGCAGTTTCAGAGAGGAACTTGCTCACGGAGTGATGAGGAATGCAAATTTGCACACCCACCAAAGAGCTGCCAGGTTGAAAACGGAAGAGTTATTGCCTGCTTTGACTCGCTAAAGGGTCGATGTTCAAGAGAAAACTGTAAGTACCTTCATCCACCTTCGCATTTAAAAACCCAGCTAGAGATTAACGGACGCAACAACCTCATCCAGCAGAAGACGGCAGCAGCCATGCTGGCCCAGCAGATGCACTTCATGATCCCAGGCACGAGCATGCAGCCTGTAGTAAGTTACTCATATTCAGTACCTACGTTCAATATGAACCAGGGGCTTGGTACAAGCCCTGGTCTCAGCTACTCTCCATATCTTACACCCATGACCTCTATGAGCCATGGGATGAGCCTGATGCCCACCGAGATGCTCCCCAGTACCCCAGTGATGGTCCCTGGAAGCCCCGGTGTCACAGTCCAGAGCTCCAActcgtcctcctcttccccctcacaGAAGCTGCTGCGCACCGACAAACTGGAGGTGTGTCGCGAGTTCCAGCGGGGGAACTGTGCGCGAGGCGAGACTGACTGCCGCTTCGCCCACCCCAGCGACAGCCCCATGATCGACACCAGCGACAACACGGTCACCGTCTGCATGGACTACATCAAGTCGCGCTGCTCCAGGGAGAAGTGCAAGTACTTCCACCCCCCTGCACACTTACAGGCCAAAATCAAAGCCTCTCAACACCAGGTCAACCAATCGGCCGTGGCAGCCCAGGCAGCAGCTGCAGCCATGACTCAGTCGACTGCCAAAGCAATGAAGCGACCCCTCGAGGCAACTGTAGACCTGGCGTTCCCCCATGGTTGCCTGCAGCCCCTACCAAAGAGACAAGCACTGGAGAAGAGCAACGGGGCCAGCTCCTTCTTCAACCCCAGTATGTTGCACTACCAGCAGGCTCTGGCCAATGCACAGCTCCAGCAGACGTCTGCGTTCTATCCCACAGGCAGATATATCAGTGCTTCCAGATTACATCATCCAGGGTCAGTGTTTTGCATGTCTCCTGCTACCGGCATTGATCATCCTCAAGTAACCTACAAGAAAGGAACAGAGTGTCAAGACGCTCCCCTTAGAGGCCCTAAACAGCCCTTCTGTAAATACTACTTTTGCTCCACACGAGAACTACAGCAACCTGCATGCTGAGAAGAAGATTACTGAGGAAATTTAGAACATTGAGCTATGTTAAAATATACAAATTATATACCTGTATTGCTAGGACTAATATCATTACTGATATGTAAATTACTGATTTATTATATGTATACACACATGATTGGAGATTGTGAAGATTTAATCGTAAAGGTATTCAACAATGACTTTTATTTCCTTTTTAATGTTTTGTTAAAAGTGCACAACACTCATCTAattcaaatgtaatttttttaGCAGAAAATGATTGTGCATCTAAGTGCTTGATTGCTTGTATTTAAAACAAAGACCATTGGAAAGCGCTCTTGTTTATACACCGTATACAAATTGCATTTGGCTTGTGAGTGTCCTTCTTGCTCTTGTAAAGGACGAATGTGACAGAGGATAGCATGTTGTTGTTTACCTTGTGGTTATTCTCTGAGTACAGGATCACTGCTCCCCCTCCTGGTGTGCCTTGGCCTCTCTACGGAGGAATAACCAACTGAGTGAGCCTCAGCAAACCCAATGTTAATAGCAGAAAATGAATTAATGTACCTTACGGCAATGATATAATCAGCCACTAATTCCAGAAATGAGAACGGAATCTAGCTACCACGGTTTCCAAGTGTCTGTCTGTGGTGCACTGTTTTCTCTATGTCTCTTCGTTCAAGGTTTTAGTTGAGCCTCGTCTTGGCATCCATCAAATAAACACCATATACCAGATGTAGTGCCAATGACCTAGCAGAGTGATGGGTGGGCTGAAAATAAGCCACCTTAGAGGAACTGAAAAGCTGAGTGAGTGTCTGCCAAGCTGTCACAGACATGTGAGGGGTTAGGTGGTCATAGTGCAGAGGCCACAGACATTAAAGAGGGAGCAGAATGATAAGACTTGAAAAGGAAAGACGTGGTGATCCTTTGTTAAAAAGGCTGACATACACGTGCAAGGAAACCTTGCGGTGACTCGAGGTCACTTATTAATCCTGTCTTATTTGAACTGTAGAAGTGCCTAAAGTAATGTACATAACAAGCATCTTGAAAAGGCTCTGTGTGAGAAATATTCAACTTTTGAGTAGAAAACCCTGCAGTTTCTCAACGTACTCCACGGCCTcgataaatacaatgaacaactgTTTGTGTGAGGTGAATTCAGTGCATTGGTAGTCTTTGTACACTGGGTTAGTTTTAGTGCTTTAACCTTTCATTTACTTTCAAGTTTCAATATCTGGCAGATCGGAACATGGCTGCTTTGGCATGAAGTTCAGTGATTGTTCATTGTGTAAAATGGTTTAGCTTAATTCTTAATGAGTTGAAAATAGTTTGCAACTAAAAAGTGATTGGAGAAGAGTTTGGAGAACCGGATATGTGTTGTGGTTCTATGTTGGTAACTCATTTGTCTTTATATACAACCGTCTTTACAACCATATCCTCGTGTTTAATGCGTTGTTATCATAGTCTGTCTAGCGTCTTTCGAGTAGAATGTATCACAGTAAATGTTTTAGTAGTAGGACGTAGTCACATAACTAATCACATTGTGCAATGAAACTCATATAACTCTACATGTGTTTTTGTCAAAGCTTCATTGTATATACAAACTGCACTTACAAACACAGACAGATTTACCCACCAATGCACCTGTGCAAAGTCTACACCAGTTATTTACAGTAGGATATAAAAGGCAAAACTAAGCTAGAAACATGGAACTATTTACAATGATCAACATGTAACTTTATTTTACCTTTTGCTTAACCTTTTATGTTTTATTTGCTCTTGAAAATAACCGTTAAAAACTTCACACAGGTGCAAACTAAATCTTTCCCACAGTCTTTCATTCTCCCTTTTCATTTTCTGTGTGAGTGAAATCAGTATGCGTAAAGAATCTCATCAGTTTCGTGATATTGTCATGGTGTTTGATCAACTCAGACAATCCACAGAAAACTAAAATGACCCATGTTCCTACCATCTTTGTCCTATTTCATTACTTTTCATTTTCTTTTCAGAAAAGTTCATTTTTATGTTCTGTTTGATGGAAATATATGGAATTTACTTATTTGTTTAACATTAGTTATAGAACAATGTTGTATTCTATTTTAAAATGAATGTAACTTATTAAGCTGAGTTTTGCTCTGCTGGCGGTTATTCAAATGACCTGTCCTGTCACGTTAGCCTATGAAAAGCCGTCTGTGACCAGGGATGGAATGTTGGAGCTACCAATGGCAAGCTTCCACATCTCATCCTTGTCACTGCCTTGTCACCTATACAGGACAACACACTGCAGTACGAGCAAGGCTGTAGAATTGCTTTTATTATGTATAAAAACAGTTTATTGTATAGGTCACAGTCTACCAAAAAAAATTAACATTTAAGTAAATTTACTTTTCATTGTAGTACGGTATAATTTCATAACTATATTAATTTGTCTCTGTGGCAACCTAAAGTTGCAATGACGGAagctatgtatttttgtaaattatGTAATTGTTACGTTTTCTAGAGCACTGTAACACACTAGATTGTATTGCCAGAATCTGAACATTTCCTATTTTATGGCAAAATTATATACGACAATATTTTCAGTATCATAATGCCTTTGTATTACAGTAGTATATTCCTTTTGCATTTGACAGCCTACCCATGACACTTAAATGTCCCTAAATACATGCTCTAATCTATTCTACCAAAAATGAGCTCTCTAAAGTCCTCTTACAAAGCATCCCTAGACTCATAAAGGCAAGGGGAAACTCAAAAAGATGTGTTTTGATGGTTGTTCAGCTGTTTAGAATTGCACTTTGTTCCCAGAATAAAGTTATTTTTACACTGCAGAAAAAGTATGTTAAACATGTAGTCATGGGTATGGCTAGTCTGGCAGTGATACTCTTAAATTATTTCAATTGTTCACTGAAGGCGtctttcacaacaacaaaaaatgctcTTTGAAAACGGATGTTAATTTTAATGGTAATTTCAACTCAAGTTCTGCTAAATGTTTCCAATGTTATTATAGCTAGATACAGCTGTACCTGAAAGTTAGTTGAGATTTTAGACCACCCAATCAAAAGAGTTGAACAGTCAGAATGTGTTCACTTTTACTGACCCAATGGTAACATGAttcctacccactgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306575 lncRNA downstream 16314 50896611 ~ 50896857 (-) True G269844
TU306578 lncRNA downstream 17342 50895236 ~ 50895829 (-) True G269847
TU306576 lncRNA downstream 18681 50893275 ~ 50894490 (-) True G269845
TU306652 lncRNA downstream 20281 50892661 ~ 50892890 (-) True G269920
TU306651 lncRNA downstream 20888 50892037 ~ 50892283 (-) True G269919
TU306679 lncRNA upstream 7242 50958270 ~ 50958676 (-) True G269947
TU306680 lncRNA upstream 10554 50961582 ~ 50962718 (-) True LOC110504222
TU306686 lncRNA upstream 18094 50969122 ~ 50969545 (-) True G269954
TU306694 lncRNA upstream 33185 50984213 ~ 50984421 (-) True G269962
TU306712 lncRNA upstream 71706 51022734 ~ 51022938 (-) True G269980
XM_021597258.2 mRNA downstream 1470 50898557 ~ 50911701 (-) True LOC110520154
XM_036974534.1 mRNA downstream 16889 50788788 ~ 50896282 (-) True farp1
XM_036974536.1 mRNA downstream 43090 50788788 ~ 50870081 (-) False farp1
XM_036974538.1 mRNA downstream 43090 50788788 ~ 50870081 (-) False farp1
XM_036974533.1 mRNA downstream 43091 50788788 ~ 50870080 (-) False farp1
XM_036974546.1 mRNA upstream 9831 50960859 ~ 51059220 (-) False LOC110504222
XM_021597284.2 mRNA upstream 160817 51111845 ~ 51126274 (-) False dnajc3a
XM_021597283.2 mRNA upstream 160817 51111845 ~ 51126276 (-) False dnajc3a
XM_036974552.1 mRNA upstream 160817 51111845 ~ 51126305 (-) True dnajc3a
XM_021597285.2 mRNA upstream 175572 51126600 ~ 51130404 (-) False LOC110520160
TU306341 other downstream 470299 50440205 ~ 50442872 (-) True LOC110520139
TU305117 other downstream 1011633 49900173 ~ 49901538 (-) True LOC110520121
TU305027 other downstream 1041526 49867217 ~ 49871645 (-) True LOC110520119
TU304905 other downstream 1345697 49563848 ~ 49567474 (-) True LOC110520112
TU304903 other downstream 1347182 49563848 ~ 49565989 (-) False LOC110520112
TU306786 other upstream 177412 51128440 ~ 51129310 (-) True LOC110520160
TU307414 other upstream 522296 51473324 ~ 51474139 (-) True fgf9
TU307458 other upstream 646371 51597399 ~ 51599898 (-) False il1rl1
TU307459 other upstream 646907 51597935 ~ 51600230 (-) True il1rl1
TU309282 other upstream 1757155 52708183 ~ 52708816 (-) True LOC110520182

Expression Profile