RNA id: XM_036974549.1


Basic Information

Item Value
RNA id XM_036974549.1
length 6021
RNA type mRNA
GC content 0.49
exon number 41
gene id uggt2
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51065174 ~ 51110275 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAAAGGTGTACATTATGTAATACAAAATCCAATACATATTATACAATGTTTATTTTCCTTTGGCTGTTAAAAAGAatacaaacaaatatattttacaatAAAAGAAGCAGCGAAGGACCTATCAATGGCAGCGGCCAGCATTACCGGGAGGATGAGTAAAAACATCTTGTTGTTGTCGTCGCTGCTTCTGCTGAACGTCCAGTATGTCCAGTCCGCATCGAAAGGCGTCTCTGCCAGTCTGAAAGCCAAGTGGAGCATGACGCCTTTCCTCCTGGAGACCAGTGAGTTTATTGCAGAGGATGGAAATGAGAAATTCTGGGACTTTGTTGACACTGTGAAGGAGTTAACGGTTTACAAAAATGGAGAGTCTGTGCGCTCCTATTACAACTTGGTAATCAAGAAGGCTGGACAGTTTTTGACCGTGCTCCAGGTCAATCTCCTCAAATTTGCTCTCTCCTTGAGGTCCTACTCACCAGCTGTTCATGCATCCCAACAGATAGGCAGTGATGAGTCTCCGCCTGAGGCATGCCTTGCCTTTGTTTCGGTCCATGGCCAACATGGCTGCAGCACAAAGGATTTGAAGAAGCTCCTGAAGGCAGCTGCAGGCAGGCCAAAACCTTATCTATACAAGAATGAGCACAGATACCCTGGACTCAATAAGACAGATGTCCCAGTTGTGATCCTTTATGCTGAGATCGGCACCAAAAAGTTTGGCTCCTTCCACAAGGTGCTGGCTGAGAAGGCTGCGGAGGGCAAGCTCATCTATGTGCTGCGTCACTTTGTAGCCGAGCCAAGGCCCCTAAAGATGCTGTTGTCTGGATATGGTGTTGAATTGGCCATAAAAAGCACTGAGTACAAAGCTGTGGATGACACACAAGTAAAAGATAAAGGAACAGTGAACACTGATGTGGATGACATTGATGAAGTCCAAGGCTTTCTCTTTGGGAAATTGAAAAACTCCCACCCAGACCTGCAGGAGCAGCTAGGGGAGCTCCGGAAGCATCTGTTAGAGAGCACCAATGACATGGCTCCTCTCAAAGTGTGGGAGCTTCAAGATCTAAGCTTCCAGGCAGCGGCCAGGATCATGTCTGTACCAACGTTTGATGCTCTGAAGCTTATGAGAGACCTCAGTCAGAACTTCCCCAGCAAAGCCAGATCACTGACAAGAGTGTCTGTGAACCAAGAAATGAGAAGAGAAATTGAGGAGAACCAGAAGCGGCTGAGTGAGACCATGGGGATCCATCCGGGAGATGGAGGCCTGTTCATCAACGGCCTTCACATTGATCTGGACGTCCACAACCCCTTCAGCATCTTGGACACTATCAGAGGAGAAGCCAAGATCCTGGAGGGCCTCCATAACCTGGGCATTAAGGACGAGAACCTAGGCAAGCTACTGAGACTGCCCATGAACCCAGTGGAAGAAAACTATGCCTTAGACATCCGCCATCCAGCTATAACGTGGATTAACGACATCGAGACAGACTCCATGTACCGCAGCTGGCCCTCCGGTGTTCAGGAGCTCCTCAGAGCCACGTTCCCCGGGGTTATCCGCCAGATACGACGCAACTTTTTCAACCTGGTGCTGTTGCTGGACCCAGTTCAGGAAGAGAGCATTGAGCTGGTGAAACTGGCAGAGCTCTTCTACAAACACAAGATTCCTCTCAGGATCGGATTTGTGTTTGTCGTCAATACTGACGACGAAGTCGATGGAACTACGGATGCTGGAGTTGCATTTTTCCGGCTGCTGAATTACATCGCCGACGAGTATGATTTATCACAGGCTCTCATGTCTATGGTTTCTATGTACAACAAAGTGGAGATCGGCGAGGCATTGTCTGTTGACACAGTGTCTGCATATCTCAAGAAGAAGTTCCCCAAAGCCAGTGCTGCAAGGATTCTTGGGGAAGATTCCGAGTATGATGACAAAAGAAAGGCAGGGGCAGTGTTCTACAAGAAGAGTGGTTTGGGCCCTCTGCCTCTGGCTCTGTTCAACGGAGTCCCACTCAATGCTGAGGAGATGGACCCAGATGAACTGGAGACTGTCATCCTACAGCGCATCATGGACACCACCAACTTCTTCCAGAGAGCTGTCTACATGGGCCAGCTGACTGAGGGGACAGATGTGGTGGACCATCTGATGGACCAGGCCAATATGGTACCACGCATCAACCCTCTCATCCTCAGCACTGACAGGACCTATCTGGATCTCACAGCCTCTCCAGTTGTAGATGACTGGGAGGACACCACCATGTACTCATACCTGGACTCCAAGGACAAGACTGCTGTCATTGCAAAGAGAATGAAGTATTTCACCAAAAATGATGAGGATGGGATTAATGGAGTGACTGTGTGGATCGTTGGGGATTTTGAAAAGGCCTCAGGGAGAAGACTGCTGCTGAACGCACTGAAACACTTGagggcCAGTGCTGGTGTGCGTGTGGGGGTGATTGATAATCCCAGCGGCGGTGCGCCCAGCGAGGACAGCACAGTGCTCTACAGGGCAGTGTGGGCCGCCCTGCTCACCCAGAAGAACAAGGCCGCAGTGGAGTTTGTGCAGAAAATCCTTAAAGAGGAAACTGTCCAGCTCCTTCAACAAGGAACCAAGATGAAGAACCTACTGGTGAAGGGCATGGACGCGGACGCCTTTGAGAAGAAGTTCAACACCATGGAGGTGGATTTCATCCTCAGTCAGCAGCTGTTCTGCAGAGATGTCCTGAAGCTGCACACTGGACAAAGGGCTGTGGTCAGCAACGGCAGGATCCTGGGGCCATTTGAAGACGAGGAGGAATTCAACGTGGAGGATTTCCATTTGTTAGAGAAGATTACGCTGAGCACCACAGCCGAGAAAGTCAAAGCTAGAATCAAGCAGATGGGAAGCAAGGGAAAGCAAGCCAGCGATCTAGTCATGAAAGTGGACGCCCTCCTCGCCGCTGCCCCCaaaggagagggcaggagagactTCCGCTTCGTCAAAGACGAGCACAGCGTGCTCCATTTCGCCCCTCGGGAAGACGAGGTGTTCTATGACGTGGTGGCCATCGTGGACCCCGTGACCCGGGACGCCCAGAAGATGTCCCCGCTGTTGATTGTGCTCAGTCAAGTGGTCAATGTGAAACTGCAGGTGTTTATGAACTGCCGGGCCAAGCTGTCCGATATGCCCCTCAAGAGCTTCTACCGTTTTGTGTTGGAGTCGGATGTGTCCTTCCTGGCCAATGAAACGGTGTCTGCAGGACCAGTGGCTCACTTCTTGGAGCTCCCTGAGTCGCCCCTCCTCACCCTCAACATGATCACCCCAGAGAGCTGGATGGTGGAGGCTGTCAGGAGCCCCTATGATCTGGACAACATCCACCTACAGGAGGTGAAAGGTGTAGTGACTGCAGAGTACGAGCTGGAGCACCTGCTGCTGGAGGGCCACTGCTTTGACCTGTCTACGGGCCAGCCCCCCCGCGGCCTGCAGTTCACCCTGGGCATGAGCCAGGACCCCCTCATGCAGGACACCATTGTCATGGCCAACCTGGGATACTTCCAGTTGAAAGCCAATCCTGGAGCCTGGATCTTGAAGCTACGGGAGGGGAGGTCAGAGGATATCTATCAAATTCTAGCGCATGATGGGACTGATTCTCCCGCTGATTCTGGTGACGTTAAAGTTGTGCTGAACAGCTTCCATAGCAAGATCATCAAAGTCAGGGTTCAGAAAAAGTCTGACAGAATCAGCGAGGACCTCCTAAGTGAAGCCACAGAGAACAAGGGAATATGGGACTCCATCGCTAGGAGAGATGGTGCCCTCGGAGCCAGGCTGAGATATTACTCTGTAAAATCTATTGCCAAAAAAATGTGCTACTGTAGACCtagCATCGCAGGTGGTGGGTCCAGTTCAGAGGACGGAGAGAAGAACAGGGAAGATGTGCTCAACATCTTCTCTGTGGCCTCGGGCCATCTATACGAGCGCTTCCTGAGAATAATGATGCTGTCCGTCCTCCAGCACACCAAAACCCCTGTGAAGTTTTGGTTCCTCAAGAATTACCTCTCTCCGTCCTTCAAGGAGTCCATACCTTACATGGCTGAGGCCTATGGTTTCCAGTATGAGCTGGTCCAGTACAAATGGCCCCGCTGGCTCCACCAGCAGACTGAGAAACAGAGGATCATCTGGGGTTACAAGATCCTCTTCCTGGATGTCCTCTTCCCCCTGGCTGTGGACAAAATCATCTTTGTGGATGCTGACCAGATAGTTAGGGCCGATCTGAAGGAGCTGAGGGATTTGAACCTGGAGGGCGCCCCCTATGGGTACACTCCCTTCTGTGACAGTCGGAAGGAGATGGAGGGCTACCGCTTCTGGAAGACTGGCTACTGGGCCTCACATCTGGGGAACAGGAGATACCACATTAGtgcTCTGTATGTGGTAGATCTGAAGAAGTTCCGCAAGATAGCAGCAGGAGACCGACTGCGTGGCCAGTACCAAGCCCTGAGCCAGGACCCCAACAGTCTGTCCAACCTGGACCAGGACCTGCCCAACAACATGATCCACCAGGTGGCCATCAAGTCCCTGCCCCAGGAGTGGCTTTGGTGTGAGACTTGGTGTGACAACGCATCCAAGACCACCGCCAAGACCATTGACCTGTGTAATAACCCCAAGACCAAGGAGCCCAAGCTGTCGGCGGCCGTGAGGATTGTGCCCGAGTGGGTGGAGTACGACAACAAGATAAAACAGTTACTGAGAGACGTCCAGGAGCAGAAAGACAATGACCGAGCGACGCAGACGCAGAGCCCGATGCCTGCACCCTCCTCCTCTACAGAGAAGACGGGCAGCGAGCGTGATGAACTCTAGCACCTGCCCACACTGCTGAAGAGGAGAGGGGCATATTTGCACCTAATTCTCCGATGAAGCTTGAAGACTACAAAGACGATGTACATTTCCCACAAACGTACTTAGCCAAGAAGTATTACGCCCTCCCTTTGAAAAGACAGAGACAcgagaattattatttttttttttaaacgaaggAGTCCTATGAAGGAAATCATTTGACGTAACCCTTTCTTGTGGTCTAATATAAACTTTATGGACAGTAGTTTGCTTCATGGTCTTCTCTTATGTAAAGAAGTATAAAGGGTTAAGAGGTCACTGTTGGTGAAAGCCATTTGCAGTCTGTAAAAGGCATTTGAAATGATTGCACTGAGACTGTATGCAAAGAATCAAATGAATACGGCTCATTCATAAGCTGACTTTGTGTTCTCTGTGCTCTGTTAAGATCGATCAGCTGACTTTTGAATTTTTATATGACAACATTCTTAGCATTTTCGAGCACCAAGCCACATCTAAATTGCCTGGCAATGTAGGCTGCTAATGGGCCTTTTTAGTTTGTCTGTTATTGATTGGTGTGATATTGCCATTGACTTAAATGCCCATCAGCGCTTGGAGACAATGTTACATTTTGATAATTGATTTCTTGCAAACCATTGCAATGGAGGCTCACGTGGCTCATATCTGTACATTAATGTGCTCTGCTGTATAGGGGATGTAatcaacactacacacactgtgGTCTGAGAGTCCCACAATTCGGTCTGTCTGACTGATTGCTTCACCAACCATTTCAAATCTCTGCCAAGTGATGCAATACTGCAAATGCTTTGTTGCCAGATAGGGATCACCTTTTCCTGTAATCACTGGGAGGACATAATCTCAGCATTTCACTATCCATTTGCGAATATACGTACGTCACAGTAAGGTACAATCTCAAACGATTAAGTTATCATTGTTTACATACCTTGTGTTTGTTGGTTAAAGTATGTATATTTTAGACTGCATTTTTCAATACCTTAATGTACAGCAAATCTTCTCAGGAATGAAATAGGTGGTGTTGATGCATTATCAAAACTCCTTTTACACCTGTCACTGTCTTAACAGCCAATAGCTTGCTCTTAAAGTTCAGCTTTCacctcagtgtgtcaaatcaaggTGTTTGTCTTTGTCAATTTCAGGTGTGATGAATAAAATCTCTTTGCTACCAAAACCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306055 lncRNA upstream 45615 51019344 ~ 51019559 (+) True G269385
TU306048 lncRNA upstream 54156 51010755 ~ 51011018 (+) True G269378
TU306044 lncRNA upstream 58621 51006242 ~ 51006553 (+) True G269374
TU306036 lncRNA upstream 68844 50996087 ~ 50996330 (+) True G269366
TU306035 lncRNA upstream 70136 50994611 ~ 50995038 (+) True G269365
TU306081 lncRNA downstream 10291 51120566 ~ 51121712 (+) True G269409
TU306117 lncRNA downstream 25973 51136248 ~ 51136495 (+) True G269444
TU307067 lncRNA downstream 305207 51415482 ~ 51415683 (+) True G270279
TU307076 lncRNA downstream 310899 51421174 ~ 51421663 (+) True G270288
TU307077 lncRNA downstream 311758 51422033 ~ 51422325 (+) True G270289
XM_021597281.2 mRNA upstream 105729 50958014 ~ 50959445 (+) True LOC110520157
XM_021597250.2 mRNA upstream 446413 50601983 ~ 50618761 (+) False LOC110520146
XR_002472950.2 mRNA downstream 38269 51148544 ~ 51193321 (+) False LOC110520162
XM_021597287.2 mRNA downstream 38343 51148618 ~ 51199761 (+) True LOC110520162
XM_021597289.2 mRNA downstream 118210 51228485 ~ 51230831 (+) True LOC110520163
XM_021597290.2 mRNA downstream 148517 51258792 ~ 51262216 (+) True LOC110520164
XM_021597291.2 mRNA downstream 156798 51267073 ~ 51276411 (+) True LOC110520165
TU305958 other upstream 164897 50898589 ~ 50900277 (+) True G269291
TU305730 other upstream 460358 50602302 ~ 50604816 (+) True LOC110520146
TU305367 other upstream 882148 50162301 ~ 50183026 (+) True hoxd3a
TU303972 other upstream 1209672 49836617 ~ 49855502 (+) True G267529
TU303803 other upstream 1509336 49554498 ~ 49555838 (+) True G267381
TU307177 other downstream 463705 51573980 ~ 51578683 (+) False LOC110520169
TU308945 other downstream 2056677 53166952 ~ 53172428 (+) True acvr2aa
TU309190 other downstream 2111152 53221427 ~ 53223265 (+) True LOC110520187
TU309244 other downstream 2181055 53291330 ~ 53336526 (+) False LOC110520190
TU309921 other downstream 2538550 53648825 ~ 53652431 (+) False G272965

Expression Profile