RNA id: XM_021597284.2


Basic Information

Item Value
RNA id XM_021597284.2
length 2012
RNA type mRNA
GC content 0.47
exon number 12
gene id dnajc3a
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51111845 ~ 51126305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCGCTTTATGTCTGGTTGGTTAACTGAGTAACGCTAGCTGTCATCTAGCTAAAAATGGGACTGTCAAGTAATTCGTGAGAGTTTGAATTGTCGTAGGTAGTATTTTCCTTTATTTCTAAGAACTATAGACAGTTACATTATGGTTGCAATAAACCCAGTTGTGCACAAAATTTTAAGTTATGTTCCTTTTCTTCTTGTTTTGATTGACCTGCGATACGAAGGGGTATGTGGCAAGGATGGAAGTTTGGAGAACCATTTGGAGATGGGGAAGAAACTCCTTGCTGCTGGACAGCTGGCTGATGCACTCTCTCATTTCCATGCTGCTATTGATGGGGATCCAAAGAACTACATGGCCTACTACAGGAGAGCGACAGTCTACCTGGCCATGGGCAAATCTAAATCTGCTCTGCCGGATCTGAGCAAAGTCATTGAACTCAAACCAGACTTCACATCGGCAAGACTTCAGAGAGGCAATCTACTCCTGAAGCAGGGGAGACTAGATGAAGCAGAGAGCGACTTTAAGAAAGTTCTCAATTCGAACCCTAGTGACAAAGATGAGAAGGAGGCCCAAAGTCGTCTCAAGAAATCTGATGAAATCCAGAGGTGGGTGACTCAGTCACGGGCTAACTTTGACCGCAAGGATTACATCACCGCTGCTGCCCAACTGGACCTAATTATTGAAACGTGTGTGTGGGACGTCAGCTCTAGAGAGCTGCGGGCAGAGTGCTTCATCCAGATGGGAGAGATGGGCAAGGCCATCAGTGACCTGACGGCTGCCTCCAAACTGAAGAGTGACAACACCCAGGCCTTCTACAAACTCAGCACCATCTACTACCACCTGGGTGACCACGAAATGTCCCTCAAtgagGTTCGAGAATGTCTGAAGCTGGACCCAGACCATGAACAGTGTTACAGCCACTACAAACAAGTCAAGAAGCTCAACAAACACATCCAGTCTGCAGAGGAGTTGATCCAGCAGCAGAGGTATGGAGATGCAGTGAGTAAATACGAGTCCGTGATTAAGACTGAGCCAAATGTTCCCCAGTACTCGCACCATGCAAAGGAGCGCATCTGCCACTGTCTGGCACAGGAGCAGCAGGATGTAAGCAGAGCCATCACAGTGTGCAGTGAGGTCCTTCAGTCTGACCCTCAGAATGTGAATGTGTTGAAGGACAGAGCAGAGGCCTACCTACTGGATGAACAGTACGAGGAAGCTATCAAGGACTATGAGACTGCCCGCGAGCACAGTGAGAATGACCGGCAGATCAAGGAAGGGCTTGAGAAAGCACAGCGCCTCCTCAAACAGTCCCAGAAGAGAGACTACTACAAGATCCTGGGCATTAAGAGGACTGCCCAGAAGAAGGAGATCGTAAAGGCCTACAGGAAGCAGGCCCAGCAGTGGCACCCAGACAACTTCCAGGATCCTGTGGAGAAGAAGAAGGCAGAGAAGAAGTTCATTGACATTGTTCAGGCCAAGGAAGTGCTCACTGATCCAGagatgaggcagaAGTTTGACAATGGCGAGGACCCCATGGACCCAGAGAGCCAGCAGGGTGGACACCATCAGAACTTTCACAGTGGTTTCCAGGGCTTTAACCCCTTCAGCTCCGGACAGTTCAACTTCAAATTCAACTACCAGTGAGCCTTAAGAGAGGAGCTTCTGGGCATTCATCCAGTATGGTTGTAGCTTAACCTCTCTCTCGTTCAGGGAGAGCACAATTACCTTCATGATGACATGTCTGAGACAACTTGTACAGATTAAAGATGTCTTTTCTGTTGAATGATATGTTTTTGGAGCTACATTCTCTGATGCGactttttaacatttttaatCTTTGCAGCAACTCCCATCTTCAATTTGAGTTCTGGGTTAATTCCAAAGCGACTACACCTTTTGTGGTGTACACTGAAAATTGGTATCCATTCCTAATGTGTACATAGATACAGTACTATTTTTATATGAATGGAGTCATTGCGAATTGTAAATAAAGATCTATTTATGCTTATAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306713 lncRNA downstream 88551 51023084 ~ 51023294 (-) True G269981
TU306712 lncRNA downstream 88907 51022734 ~ 51022938 (-) True G269980
TU306694 lncRNA downstream 127424 50984213 ~ 50984421 (-) True G269962
TU306686 lncRNA downstream 142300 50969122 ~ 50969545 (-) True G269954
TU306680 lncRNA downstream 149127 50961582 ~ 50962718 (-) True LOC110504222
TU306791 lncRNA upstream 10652 51136926 ~ 51137490 (-) True G270057
TU306801 lncRNA upstream 20743 51147017 ~ 51147288 (-) True G270067
TU306827 lncRNA upstream 43935 51170209 ~ 51171519 (-) True G270091
TU306834 lncRNA upstream 54815 51181089 ~ 51181542 (-) True G270098
TU306844 lncRNA upstream 69058 51195332 ~ 51267591 (-) True G270105
XM_036974546.1 mRNA downstream 52625 50960859 ~ 51059220 (-) False LOC110504222
XM_021597261.2 mRNA downstream 160817 50913171 ~ 50951028 (-) False LOC110520155
XM_021597262.2 mRNA downstream 162432 50913171 ~ 50949413 (-) False LOC110520155
XM_021597273.2 mRNA downstream 162433 50913171 ~ 50949412 (-) False LOC110520155
XM_021597285.2 mRNA upstream 326 51126600 ~ 51130404 (-) False LOC110520160
XM_021597286.2 mRNA upstream 4359 51130633 ~ 51135461 (-) True cldn10b
XM_021597293.2 mRNA upstream 150647 51276921 ~ 51389581 (-) False LOC110520166
XM_021597292.2 mRNA upstream 150647 51276921 ~ 51389582 (-) True LOC110520166
XM_021583046.2 mRNA upstream 337937 51464211 ~ 51470676 (-) True LOC110504232
TU306341 other downstream 668973 50440205 ~ 50442872 (-) True LOC110520139
TU305117 other downstream 1210307 49900173 ~ 49901538 (-) True LOC110520121
TU305027 other downstream 1240200 49867217 ~ 49871645 (-) True LOC110520119
TU304905 other downstream 1544371 49563848 ~ 49567474 (-) True LOC110520112
TU304903 other downstream 1545856 49563848 ~ 49565989 (-) False LOC110520112
TU306786 other upstream 2166 51128440 ~ 51129310 (-) True LOC110520160
TU307414 other upstream 347050 51473324 ~ 51474139 (-) True fgf9
TU307458 other upstream 471125 51597399 ~ 51599898 (-) False il1rl1
TU307459 other upstream 471661 51597935 ~ 51600230 (-) True il1rl1
TU309282 other upstream 1581909 52708183 ~ 52708816 (-) True LOC110520182

Expression Profile