RNA id: XR_002472950.2


Basic Information

Item Value
RNA id XR_002472950.2
length 4336
RNA type mRNA
GC content 0.54
exon number 28
gene id LOC110520162
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51148544 ~ 51199761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTATGTCGCTTTTGTTTTGAGCCGATTTCGCCGTCGTCCAGAACGGGGCACTCTGCTCCAAATGGAATGCAATCAACGTAAACCCGGTTCACCGGGGATATTAATCGAATCCCCTCAATGGCGGGGTGCGCGGTCGCACTGATGAAAACCGAGCCGCGGCTCTTATGCACAGTTCATTATCTAGCTTCACACGGGTCTTATTACCTGTGTCGATTGTAGACTATGTGCTACCGGTGAGAAAATAATCTATATTTTCTATTAAGTTGCCTTCTGTATTTAATGATATATTTTCAGCTACATACACAGGTTGTTTTCAGTTTACATTCACTGTCAGAGCATGGAACCTTTGCGGAAAGAGGCGAAGGATAATCCATCGGCTACAGCTAATCTTCTTTCCAAGATTTTCTTCTGCTGGCTGAATCCTTTATTCCGTATCGGCTATAATCGGAGGCTAGAGGAACATGACATGTACAAAGTTCTCCCAGAGGATGGATCTGAGAGACTAGGAGAAGATTTACAGTGGTACTGGGATCAAGAAGTACAGTGGGCTGCTAAGGACCTGCGCACACCCAGACTAACCAGAGTCCTCATTGCGTGCTATTGGAGGTCCTATTCTGTCATAGGAATATTTACTCTCATTGAGGAAATTATCAAAGTGATTCAGCCAGTACTTCTTGGGAAGCTCATCCGGTATTTTGAGAGCTATGACCCTGACAACATGGATGCTCTGTATGAGGCCTGTGGCTATGCTGCAGGCGTCTCCCTGTCCACCCTGGGTCTGGCTGCTCTGCACCACCTCTACTTCTACCACGTGCAGCGAGCCGGCATGAAGATCCGGGTGGCCATGTGTCACATGATCTATCGGAAGGCCCTCTGTCTTAACAGCACAGCGCTGGGAAAAACCACCACTGGACAAATCGTCAACCTCTTATCCAATGACGTCAACAAGTTTGATGAGGTCACCATCTTTTTGCACTTCCTCTGGGTGGGTCCTCTACAAGCAGCGGCTGTGATGGTGTTGCTATGGTATGAGATCGGCCCATCATGCCTTGCAGGAATGGCCGTCCTGGTCTTCCTGATGCCTATACAGACTCTGTTTGGTCGCCTGTTCTCCTCTTTCAGGGGCACAACCGCAGCCTTGACAGACAACAGAATACGCACGATGAATGAAGTGGTCTCTGGGATCCGGATCATCAAGATGTATGCCTGGGAGAAGCCTTTTGCAGCTCTGGTAGATGAAGTCAGAAGGAAGGAGATCTCCAAGATCATGAAGAGCTCTTACCTGAGAGGCCTCAACATGGCCTCCTTCTTTGTGGCCAGCAAGATCATCGTCTTCATCACCTTCACTGTCTATGTGTTGATGGGGAACAGGATCTCTGCCAGCCGGGTATTTGTGGCCGTTTCTCTGTACGGGGCTGTGAGACTCACAGTCACCCTCTTCTTCCCGAATGCCGTAGAGAAGGTCTCTGAGGCTCTCATCAGCATCCGCAGGATCAAGAATTTTCTTATGTTGGAGGAAGTTGGTTCGGCGCAGGATCTTGGACTCCCTGTGGCAGAGAAGAAGGACTGTATGGTGGAAATAAAGGACTTAATCTGCTTCTGGAACAAGGCACTAGACTCTCCGACGCTGCAGAACCTGTCTTTCACTTTGAGGTCAGAGCAACTCCTGGCTGTCATTGGACCAGTCGGGGCTGGAAAGTCCTCTCTACTCAGCACCATCCTGGGGGAGCTGACCCCGGATAAGGGTGTGGTCAAGTTCAAAGGAGAACTGACCTATGCATCCCAGCAGCCCTGGATTTTCCCAGGGACCATCAGGAGTAACATCCTGTTTGGCAAAGCGCTCCACCCTCAGAAGTATGAGAGGGTCCTCCGAGCCTGCGCCCTCAAGAGAGACATGGAGCTGTTGCCTGATGGGGACCTGGAGGTGATAGGGGACAGAGGAGCCACCCTCAGCGGGGGACAGAAGGCCCGGGTCAGCCTGGCCAgAGCAGTGTACCAGGATGCTGATATCTACCTGCTGGATGACCCTCTCAGTGCTGTGGATGCTGAGGTGGGGAAACACCTCTTTGAGCAGTGTATCTGTGGCCTGTTGCGGAAGAAGCCGCGCATCCTTGTCACCCACCAGCTGCAGTACCTGAAGGCTGCAGACCAGATCCTAGTTCTGAAGgaaGGTCACATGGTGGCGCGGGGTACGTTCACGGAACTCCAGGGCTCTGGATTAGACTTCACCTCGCTGCTGAAAAAGgatgaggaggacgaggaggaggggaagggggagcCTGCCCCAGGCACACTCACCGGCTCCCCACACACCCTATCCCAGAGCTCTatgccctccctctcctcctccatgcattCTGTGATGGAGGGAGTGGACCAACCAGAGccAGTGCAACACGTGTTGGAGGAGAGTCGTTCAGAGGGAACCATCGGTCTCCATCTTTATCTGAAGTACTTCAGAGCAGGTGCTAACGTCCTGGTTCTCCTGGCCCTAGTTTTCCTTAACCTGCTGGCACATATCACATATATTCTACAGGATTGGTGGCTTGCTTACTGGGCCTCTGAACAGGAGCATCTCAATGTGACGGAGCCCATCCACAATGGCAGCAGTGCCACTCAGCAGCTGGACCTTGACCTTTACTTGGGTGTTTACGCAGGTTTAACAGGGGCCACCATCGTATTTGGCTTCCTGCGTAGTCTTGTGTTCTTCAACGTCCTGGTGAACTCAGCCCAGACCCTCCACAACCGCATGTTCACCGCCATCCTCCGCACCCCTGTCCGCTTCTTCGACATCAATCCCATTGGAAGAATCCTCAACAGGTTCTCTAAGGACATTGGTTACCTGGACTCTCTGCTGCCCTGGACCTTTGTGGACTTTATCCAGgtgtTCCTGCAGATCCTGGGGGTGATCATCGTGGCGGCCGCCGTCATCCCCTGGATCCTCATCCCCGTCGTCCCTCTACTCGTCGTCTTCCTGTTCTTGCGACGCTACTTCCTGCAGACCTCCAGGGACATCAAGCGCCTGGAGTCCACTACCCGGAGCCCAGTTTTCACCCACCTGTCCTCATCCCTCCAAGGTCTGTGGACCATCCGTGCCTTTAAAGCCCAGCAGCGGTTCCAGCAGGCATTTGACGCACATCAAGACCTCCACTCCGAGGCCTGGTTCCTATTCCTGACCACATCCCGATGGTTCGCTCTGCGTCTGGATGGCATCTGCTCCATATTTGTCACCCTCACTACCTTTGGGTGCCTGTTCCTCAGGGATGACTTGAAGGCAGGTGCTGTGGGCCTGGCTCTGTCCTATGCAGTAACCCTCGTCGGCATGTTTCAGTGGGGAGTCAGACAGAGTGCGGAGGTGGAGAACATGATGACTTCTGTGGAAAGGGTGGTGGAGTACACAGAACTGGAGAGCGAAGCACCTTGGGAGACAGACAAACGGCCTCCGCCTGATTGGCCCAGGCATGGTTTCATCACCTTCGACCAGGTCAATTTCTCCTACTATGCGGACAGTCCTCCGGTCCTAAAGAACATTACTGCGGTCTTCAGATCCAGAGAAAAGGTTGGCATCGTGGGGCGGACTGGCGCTGGTAAAAGCTCGCTGATCTCGGCTCTGTTCCGCCTGGCTGAACCTGATGGCAGGATTTCCATCGACGGCGTTCCCACCGCCGAGATCGGCCTGCATACCCTGCGCCAGAGAATCTCCATCATCCCCCAGGACCCGGTTCTCTTCACGGGCACCATGAGGAAGAATCTGGACCCTTTCAGCCAGCACACAGACGAGGACCTGTGGAATGCACTGGGAGAGGTACTCCAGCTTGGGCTCTGAATGCTTCCCCCTCAGAGGCCCATGGGGGgatccctctgtccccctccacAATGCTGCCATTCAGGCTCCCTGCTCGCCACAAGTCATGGAGGGGAAATCCCATTAGGGCCGTGGGGCCCAGCTCAATGTGCGGCTTGTAACTGGGAGCCATTCAAAGTGCtggggagatgtgttgtgctgcgtTTGCCAGTTAGGCACTAGAGGATGAAGGCAGGGTTCCCCCACAGTGAAGGGCTCCAGCTCCTGCTCCCCAGTCTCCCCGCTCCTCAATGGGTTTGCTGGCCTGGATTAAAGCAAGAGGCTGGTCACAAGGGAGCGGTGGCCAAGGTCATCAGTGGACCTGGCCCTGCATTGTGCCAGCCGGTTAatgggTGCAGCTGAGGACCGTGGTGGAGGAGCTGCCTGGGAGGCTGGAGACCATGCTGGCTGAGTCGGGCTCCAACTTCAGCGTGGGTCAGAGGCAGCTAGTCTGTCTGGCCAGGGCCATCCTCAGACGGAACAAAATCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306117 lncRNA upstream 12049 51136248 ~ 51136495 (+) True G269444
TU306109 lncRNA upstream 24549 51098811 ~ 51123995 (+) True G269436
TU306081 lncRNA upstream 26832 51120566 ~ 51121712 (+) True G269409
TU306055 lncRNA upstream 128985 51019344 ~ 51019559 (+) True G269385
TU306048 lncRNA upstream 137526 51010755 ~ 51011018 (+) True G269378
TU307067 lncRNA downstream 222161 51415482 ~ 51415683 (+) True G270279
TU307076 lncRNA downstream 227853 51421174 ~ 51421663 (+) True G270288
TU307077 lncRNA downstream 228712 51422033 ~ 51422325 (+) True G270289
TU307129 lncRNA downstream 278282 51471603 ~ 51472132 (+) True G270335
TU307130 lncRNA downstream 279265 51472586 ~ 51472945 (+) True G270336
XM_036974548.1 mRNA upstream 38269 51065174 ~ 51110275 (+) False uggt2
XM_036974549.1 mRNA upstream 38269 51065174 ~ 51110275 (+) False uggt2
XM_036974550.1 mRNA upstream 38269 51065174 ~ 51110275 (+) False uggt2
XM_036974551.1 mRNA upstream 38269 51065174 ~ 51110275 (+) True uggt2
XM_021597281.2 mRNA upstream 189099 50958014 ~ 50959445 (+) True LOC110520157
XM_021597289.2 mRNA downstream 35164 51228485 ~ 51230831 (+) True LOC110520163
XM_021597290.2 mRNA downstream 65471 51258792 ~ 51262216 (+) True LOC110520164
XM_021597291.2 mRNA downstream 73752 51267073 ~ 51276411 (+) True LOC110520165
XM_021597294.2 mRNA downstream 297031 51490352 ~ 51500089 (+) True pdxka
XM_036974558.1 mRNA downstream 311200 51504521 ~ 51532634 (+) False LOC110520168
TU305958 other upstream 248267 50898589 ~ 50900277 (+) True G269291
TU305730 other upstream 543728 50602302 ~ 50604816 (+) True LOC110520146
TU305367 other upstream 965518 50162301 ~ 50183026 (+) True hoxd3a
TU303972 other upstream 1293042 49836617 ~ 49855502 (+) True G267529
TU303803 other upstream 1592706 49554498 ~ 49555838 (+) True G267381
TU307177 other downstream 380659 51573980 ~ 51578683 (+) False LOC110520169
TU308945 other downstream 1973631 53166952 ~ 53172428 (+) True acvr2aa
TU309190 other downstream 2028106 53221427 ~ 53223265 (+) True LOC110520187
TU309244 other downstream 2098009 53291330 ~ 53336526 (+) False LOC110520190
TU309921 other downstream 2455504 53648825 ~ 53652431 (+) False G272965

Expression Profile