RNA id: XM_021597287.2


Basic Information

Item Value
RNA id XM_021597287.2
length 6326
RNA type mRNA
GC content 0.50
exon number 31
gene id LOC110520162
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51148544 ~ 51199761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACGTAAACCCGGTTCACCGGGGATATTAATCGAATCCCCTCAATGGCGGGGTGCGCGGTCGCACTGATGAAAACCGAGCCGCGGCTCTTATGCACAGTTCATTATCTAGCTTCACACGGGTCTTATTACCTGTGTCGATTGTAGACTATGTGCTACCGGTGAGAAAATAATCTATATTTTCTATTAAGTTGCCTTCTGTATTTAATGATATATTTTCAGCTACATACACAGGTTGTTTTCAGTTTACATTCACTGTCAGAGCATGGAACCTTTGCGGAAAGAGGCGAAGGATAATCCATCGGCTACAGCTAATCTTCTTTCCAAGATTTTCTTCTGCTGGCTGAATCCTTTATTCCGTATCGGCTATAATCGGAGGCTAGAGGAACATGACATGTACAAAGTTCTCCCAGAGGATGGATCTGAGAGACTAGGAGAAGATTTACAGTGGTACTGGGATCAAGAAGTACAGTGGGCTGCTAAGGACCTGCGCACACCCAGACTAACCAGAGTCCTCATTGCGTGCTATTGGAGGTCCTATTCTGTCATAGGAATATTTACTCTCATTGAGGAAATTATCAAAGTGATTCAGCCAGTACTTCTTGGGAAGCTCATCCGGTATTTTGAGAGCTATGACCCTGACAACATGGATGCTCTGTATGAGGCCTGTGGCTATGCTGCAGGCGTCTCCCTGTCCACCCTGGGTCTGGCTGCTCTGCACCACCTCTACTTCTACCACGTGCAGCGAGCCGGCATGAAGATCCGGGTGGCCATGTGTCACATGATCTATCGGAAGGCCCTCTGTCTTAACAGCACAGCGCTGGGAAAAACCACCACTGGACAAATCGTCAACCTCTTATCCAATGACGTCAACAAGTTTGATGAGGTCACCATCTTTTTGCACTTCCTCTGGGTGGGTCCTCTACAAGCAGCGGCTGTGATGGTGTTGCTATGGTATGAGATCGGCCCATCATGCCTTGCAGGAATGGCCGTCCTGGTCTTCCTGATGCCTATACAGACTCTGTTTGGTCGCCTGTTCTCCTCTTTCAGGGGCACAACCGCAGCCTTGACAGACAACAGAATACGCACGATGAATGAAGTGGTCTCTGGGATCCGGATCATCAAGATGTATGCCTGGGAGAAGCCTTTTGCAGCTCTGGTAGATGAAGTCAGAAGGAAGGAGATCTCCAAGATCATGAAGAGCTCTTACCTGAGAGGCCTCAACATGGCCTCCTTCTTTGTGGCCAGCAAGATCATCGTCTTCATCACCTTCACTGTCTATGTGTTGATGGGGAACAGGATCTCTGCCAGCCGGGTATTTGTGGCCGTTTCTCTGTACGGGGCTGTGAGACTCACAGTCACCCTCTTCTTCCCGAATGCCGTAGAGAAGGTCTCTGAGGCTCTCATCAGCATCCGCAGGATCAAGAATTTTCTTATGTTGGAGGAAGTTGGTTCGGCGCAGGATCTTGGACTCCCTGTGGCAGAGAAGAAGGACTGTATGGTGGAAATAAAGGACTTAATCTGCTTCTGGAACAAGGCACTAGACTCTCCGACGCTGCAGAACCTGTCTTTCACTTTGAGGTCAGAGCAACTCCTGGCTGTCATTGGACCAGTCGGGGCTGGAAAGTCCTCTCTACTCAGCACCATCCTGGGGGAGCTGACCCCGGATAAGGGTGTGGTCAAGTTCAAAGGAGAACTGACCTATGCATCCCAGCAGCCCTGGATTTTCCCAGGGACCATCAGGAGTAACATCCTGTTTGGCAAAGCGCTCCACCCTCAGAAGTATGAGAGGGTCCTCCGAGCCTGCGCCCTCAAGAGAGACATGGAGCTGTTGCCTGATGGGGACCTGGAGGTGATAGGGGACAGAGGAGCCACCCTCAGCGGGGGACAGAAGGCCCGGGTCAGCCTGGCCAgAGCAGTGTACCAGGATGCTGATATCTACCTGCTGGATGACCCTCTCAGTGCTGTGGATGCTGAGGTGGGGAAACACCTCTTTGAGCAGTGTATCTGTGGCCTGTTGCGGAAGAAGCCGCGCATCCTTGTCACCCACCAGCTGCAGTACCTGAAGGCTGCAGACCAGATCCTAGTTCTGAAGgaaGGTCACATGGTGGCGCGGGGTACGTTCACGGAACTCCAGGGCTCTGGATTAGACTTCACCTCGCTGCTGAAAAAGgatgaggaggacgaggaggaggggaagggggagcCTGCCCCAGGCACACTCACCGGCTCCCCACACACCCTATCCCAGAGCTCTatgccctccctctcctcctccatgcattCTGTGATGGAGGGAGTGGACCAACCAGAGccAGTGCAACACGTGTTGGAGGAGAGTCGTTCAGAGGGAACCATCGGTCTCCATCTTTATCTGAAGTACTTCAGAGCAGGTGCTAACGTCCTGGTTCTCCTGGCCCTAGTTTTCCTTAACCTGCTGGCACATATCACATATATTCTACAGGATTGGTGGCTTGCTTACTGGGCCTCTGAACAGGAGCATCTCAATGTGACGGAGCCCATCCACAATGGCAGCAGTGCCACTCAGCAGCTGGACCTTGACCTTTACTTGGGTGTTTACGCAGGTTTAACAGGGGCCACCATCGTATTTGGCTTCCTGCGTAGTCTTGTGTTCTTCAACGTCCTGGTGAACTCAGCCCAGACCCTCCACAACCGCATGTTCACCGCCATCCTCCGCACCCCTGTCCGCTTCTTCGACATCAATCCCATTGGAAGAATCCTCAACAGGTTCTCTAAGGACATTGGTTACCTGGACTCTCTGCTGCCCTGGACCTTTGTGGACTTTATCCAGgtgtTCCTGCAGATCCTGGGGGTGATCATCGTGGCGGCCGCCGTCATCCCCTGGATCCTCATCCCCGTCGTCCCTCTACTCGTCGTCTTCCTGTTCTTGCGACGCTACTTCCTGCAGACCTCCAGGGACATCAAGCGCCTGGAGTCCACTACCCGGAGCCCAGTTTTCACCCACCTGTCCTCATCCCTCCAAGGTCTGTGGACCATCCGTGCCTTTAAAGCCCAGCAGCGGTTCCAGCAGGCATTTGACGCACATCAAGACCTCCACTCCGAGGCCTGGTTCCTATTCCTGACCACATCCCGATGGTTCGCTCTGCGTCTGGATGGCATCTGCTCCATATTTGTCACCCTCACTACCTTTGGGTGCCTGTTCCTCAGGGATGACTTGAAGGCAGGTGCTGTGGGCCTGGCTCTGTCCTATGCAGTAACCCTCGTCGGCATGTTTCAGTGGGGAGTCAGACAGAGTGCGGAGGTGGAGAACATGATGACTTCTGTGGAAAGGGTGGTGGAGTACACAGAACTGGAGAGCGAAGCACCTTGGGAGACAGACAAACGGCCTCCGCCTGATTGGCCCAGGCATGGTTTCATCACCTTCGACCAGGTCAATTTCTCCTACTATGCGGACAGTCCTCCGGTCCTAAAGAACATTACTGCGGTCTTCAGATCCAGAGAAAAGGTTGGCATCGTGGGGCGGACTGGCGCTGGTAAAAGCTCGCTGATCTCGGCTCTGTTCCGCCTGGCTGAACCTGATGGCAGGATTTCCATCGACGGCGTTCCCACCGCCGAGATCGGCCTGCATACCCTGCGCCAGAGAATCTCCATCATCCCCCAGGACCCGGTTCTCTTCACGGGCACCATGAGGAAGAATCTGGACCCTTTCAGCCAGCACACAGACGAGGACCTGTGGAATGCACTGGGAGAGgTGCAGCTGAGGACCGTGGTGGAGGAGCTGCCTGGGAGGCTGGAGACCATGCTGGCTGAGTCGGGCTCCAACTTCAGCGTGGGTCAGAGGCAGCTAGTCTGTCTGGCCAGGGCCATCCTCAGACGGAACAAAATCCTCATCATTGACGAGGCCACCGCTAACGTGGACCCCAGAACCGATGGCCTTATCCAGCAGACCATCCGGGAGAAGTTCAGGGAGTGTACTGTGCTCACCATCGCCCACCGACTCAACACTATCATCGACTGTGACCGGATCCTGGTTCTAGATGCTGGGAGGATCCAGGAATACAATGAGCCCTACGTTCTGCTTCAGAACCAGGAAGGAGTGTTCTACCAGATGGTCCAGCAGACAGGCAAGGCAGAGGCAGCCTCCCTGCTCCATGCAGCCAAACAGGTTCACATGAACAAAAGCCATCCCAATGTGATCAACGGACTGACGGACCTGAGCCCGTCCGAGGGGAGCTGTGTCATCTTTGAGACGGCCCTGTGACACCGTTGTCTGACCTTTTCACCCCTGTAATGTGGCCCTCTGTGCTGGCCACACCATGAGGATGCCTCACACACTGTACCAAATATTATCCAGCTCTTGATTTCACAATGCCTTCTTTAACACCGCTGGCAAAGGTGTGGCGATCAGGCGTTTTCCTTTAGCACTTTTCAATTAAATGGGGCAGCGCCCCACCAGTTATGGTTTgggttaatattttttttttaaataagcaaAAGTGTTGAAACGGGGACAAAGTAGGCCTACAGTTTTTTTGGTGTGTTTTTGTTAGACTCACCAGCCTTGCCTCCTAATCTGTCAATTCGCACACTATGTCCTTCTCATCAGAGTGCTGTGTGGGTGTTGACCTGTCAGATTCATGAAAATCACAGGGCACACGAATTGGGCATGACGCACGTCTATAGACTCGGATATTATTTTAGCAAACAGGGTAAGAACTCGCTCCTGACAGACCCAAGCAAAACCTCTTTACAGAAACATTGTAGCAGCCTACACCTAAACATTAGtgatctgacatgctgtatcaGTCTGAGCAACTGTAGGCCCAGCCTCTATGCGACCTGTCCCATCTGGCTTGGGGAAATTAAGTGGTAACGTTCACAGCCTAAGCCAATTTATTTGTGTTAAGAGAAATTGTGAATATGATCATATTTGGAATGGAActttttatgggggggggggggggggcagttgccATTTCAATCCCTGGGCCTACCCTACAGCGTTTCCAATGGAAGGAAAGCGGTGAGAAGCAGTGGGCAGGGGAACGTTTGGGGGTGACGGGAGCTGAATAGGGGAGGACTAAAGTTGGGCAAATCGTATCACGACGCGAGATAAGTTTGGTTGTTTTCAAATCAAAATCCCCTGCCTAATGGAACAGCCAAAGAGAAGGCTCAACTTTCCTAACTGCCATAAATTCCATATCGTCTGCCTTTCACTTAAACAATAGGGATAAACACGAAATATTAGTTTTAGGCTTAGCCTACTGGAATCCCTTACATTCTTGTTGTTTTCAGTTTTAAAAAATCACCTGGGGCAGGTGAATCACCAGGCAATAGGGCAACCCTTAAGGTCCCTGCTATAACTAGGTTCTGGAGTTTTACCTGGTTACAatcaggagaagaagaagaaattcCCCAGCACTCTGGGAGCTGTGGTGTCACGTGATTAGCATACATAGGCTATGGATCCATAACTGCCCAGGAGCAATTGTTTGAAGCAATTTGTGCCTTTATTAAAAACAAATGACTGGTAtttgtattgattgattgattgtattgATTGTTTTGCAATATTTGTTTTTGTATGTATGTTGCATGGCCCCTGGGGTAGGATTATTCACAATCCTGCATTTGGTTGCATGTAAAGATTTAGGGGTGTGGAGTGTTTactggtgtaaaaaaaaaacagtagttTATACTGGTTGGATACACATTTTAGGTTATTCAGAGTAAAACCTACCTAGCTGACAGTGGGTTTGACCAGTAAGTTAATAGTTTTAAGTCAAATTTGATTTTGTACTTTCAAAAAAAAATAGGATCCACGTCTTATTGTTTTCAATAATCATTGTGCCTTGATCAGAATATCGATCCTTTGTAATTGCACTGTTTTCATTGATTTGTCTTTTTAAGACCAGATTTGGTCTTCTTGCACTCTGAGTAGAATGACTATTGCTACCTCTGTTTTTGGAATAAAGCTGTGGATGAAAAGCAGGTCAGAAGTAGTTGGATTGTGTGTTAGCATGTATACTAGATGACCGCTCAAAGAGCTTATGAAATGATGCGAAAGGCATGAATGCTTTTGAAGAGAATCATTGTGTGTACTGTCGACATGTTTTTCCCTGCTCTGATCATCTGAGCTACGTACGCTGCTTATGTTGTATGTATGCGGTTCTGGAACTATAACCATTGATCCACTTTTTCAGTTTGTGGGACTACAACCAATCAGATGATTGACTCTTAAACTTGATCAATAAAGCCGTGCAAAAAATCAAGACATCATATGACCGTTAAAGATGCAATATGAATGTAATCCAACGAATAAAAACTGTATTAGTTGAATACTTA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05673 ABCC4; ATP-binding cassette, subfamily C (CFTR/MRP), member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306117 lncRNA upstream 12123 51136248 ~ 51136495 (+) True G269444
TU306109 lncRNA upstream 24623 51098811 ~ 51123995 (+) True G269436
TU306081 lncRNA upstream 26906 51120566 ~ 51121712 (+) True G269409
TU306055 lncRNA upstream 129059 51019344 ~ 51019559 (+) True G269385
TU306048 lncRNA upstream 137600 51010755 ~ 51011018 (+) True G269378
TU307067 lncRNA downstream 215721 51415482 ~ 51415683 (+) True G270279
TU307076 lncRNA downstream 221413 51421174 ~ 51421663 (+) True G270288
TU307077 lncRNA downstream 222272 51422033 ~ 51422325 (+) True G270289
TU307129 lncRNA downstream 271842 51471603 ~ 51472132 (+) True G270335
TU307130 lncRNA downstream 272825 51472586 ~ 51472945 (+) True G270336
XM_036974548.1 mRNA upstream 38343 51065174 ~ 51110275 (+) False uggt2
XM_036974549.1 mRNA upstream 38343 51065174 ~ 51110275 (+) False uggt2
XM_036974550.1 mRNA upstream 38343 51065174 ~ 51110275 (+) False uggt2
XM_036974551.1 mRNA upstream 38343 51065174 ~ 51110275 (+) True uggt2
XM_021597281.2 mRNA upstream 189173 50958014 ~ 50959445 (+) True LOC110520157
XM_021597289.2 mRNA downstream 28724 51228485 ~ 51230831 (+) True LOC110520163
XM_021597290.2 mRNA downstream 59031 51258792 ~ 51262216 (+) True LOC110520164
XM_021597291.2 mRNA downstream 67312 51267073 ~ 51276411 (+) True LOC110520165
XM_021597294.2 mRNA downstream 290591 51490352 ~ 51500089 (+) True pdxka
XM_036974558.1 mRNA downstream 304760 51504521 ~ 51532634 (+) False LOC110520168
TU305958 other upstream 248341 50898589 ~ 50900277 (+) True G269291
TU305730 other upstream 543802 50602302 ~ 50604816 (+) True LOC110520146
TU305367 other upstream 965592 50162301 ~ 50183026 (+) True hoxd3a
TU303972 other upstream 1293116 49836617 ~ 49855502 (+) True G267529
TU303803 other upstream 1592780 49554498 ~ 49555838 (+) True G267381
TU307177 other downstream 374219 51573980 ~ 51578683 (+) False LOC110520169
TU308945 other downstream 1967191 53166952 ~ 53172428 (+) True acvr2aa
TU309190 other downstream 2021666 53221427 ~ 53223265 (+) True LOC110520187
TU309244 other downstream 2091569 53291330 ~ 53336526 (+) False LOC110520190
TU309921 other downstream 2449064 53648825 ~ 53652431 (+) False G272965

Expression Profile