RNA id: TU307414



Basic Information


Item Value
RNA id TU307414
length 588
RNA type TUCP
GC content 0.49
exon number 3
gene id fgf9
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51471899 ~ 51478510 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTTGTGTCAAAGGAACTGTCCATTTCAGAGAACAGATTTGAAACAGACCTGGAAGCCCTTGATGCTTGCTGAAGGTGTTTGCCATGAAGCGTGGTGTTGTGGGCATCAGAGGCATCAAGACTGGCTTGTATATCTGTATGAGCCAAGAGGGCATCGCACACGGAGCAGTACAGTTCTCATCTGAATGTCTGTTCAAGGAGAGCCTGGAGGAGAACCACTACACCACCTTTTCCTCCCTGTCTCATCCAGGCATCTACTTGGCCCTGTCCCATAAAGGAGAGGCCAAGAGGGGGACCAGCGTTGGGAGACTCCAGCCCTGCACACACTTCCTCCCTCGCAGAGCTCCATAAGTAACCCCTGTGCAACCCTTTTACAACCTTTCTACAACCAATGACCCCAACCCAGGGGTCACAACTGTAACTGTGAGGAGAATCCTGTAAATCCCTACAACGTTGAAATGACCCAAACCGTTGGGCATTTCACCCTTTTACCCAGCGTGACTGATATACCTGAAATGACATTGGAAACAGTGTAGCAACTGAAGAAAAGCAAATTGACATATAATGGTAGACTAACTCTAAGGGTCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU307413 lncRNA downstream 995 51471899 ~ 51472329 (-) False fgf9
TU307401 lncRNA downstream 17358 51455767 ~ 51455966 (-) True G270582
TU307390 lncRNA downstream 31747 51441320 ~ 51441577 (-) True G270571
TU307074 lncRNA downstream 53551 51419434 ~ 51419773 (-) True G270286
TU307053 lncRNA downstream 66512 51406595 ~ 51406812 (-) True G270267
TU307436 lncRNA upstream 16455 51490594 ~ 51498737 (-) True G270611
TU307378 lncRNA upstream 55310 51529449 ~ 51532402 (-) False G270567
TU307381 lncRNA upstream 55310 51529449 ~ 51532402 (-) False G270567
TU307384 lncRNA upstream 55310 51529449 ~ 51532544 (-) True G270567
TU307447 lncRNA upstream 63508 51537647 ~ 51538128 (-) True G270621
XM_021583046.2 mRNA downstream 2648 51464211 ~ 51470676 (-) True LOC110504232
XM_021597292.2 mRNA downstream 83742 51276921 ~ 51389582 (-) True LOC110520166
XM_021597293.2 mRNA downstream 83743 51276921 ~ 51389581 (-) False LOC110520166
XM_021597286.2 mRNA downstream 337863 51130633 ~ 51135461 (-) True cldn10b
XM_021597285.2 mRNA downstream 342920 51126600 ~ 51130404 (-) False LOC110520160
XM_021597298.2 mRNA upstream 76558 51550697 ~ 51559339 (-) False LOC110520170
XM_036963750.1 mRNA upstream 122794 51596933 ~ 51619474 (-) False il1rl1
XM_036963761.1 mRNA upstream 122794 51596933 ~ 51619476 (-) False il1rl1
NM_001281424.1 mRNA upstream 131577 51605716 ~ 51619142 (-) False il1rl1
XM_036974559.1 mRNA upstream 156650 51630789 ~ 51680912 (-) False LOC110520172
TU306786 other downstream 344014 51128440 ~ 51129310 (-) True LOC110520160
TU306341 other downstream 1030452 50440205 ~ 50442872 (-) True LOC110520139
TU305117 other downstream 1571786 49900173 ~ 49901538 (-) True LOC110520121
TU305027 other downstream 1601679 49867217 ~ 49871645 (-) True LOC110520119
TU304905 other downstream 1905850 49563848 ~ 49567474 (-) True LOC110520112
TU307458 other upstream 123260 51597399 ~ 51599898 (-) False il1rl1
TU307459 other upstream 123796 51597935 ~ 51600230 (-) True il1rl1
TU309282 other upstream 1234044 52708183 ~ 52708816 (-) True LOC110520182
TU309646 other upstream 1775787 53249926 ~ 53251084 (-) True G272713
TU311493 other upstream 3205779 54679918 ~ 54682805 (-) True G274344

Expression Profile