RNA id: XM_021597297.2


Basic Information

Item Value
RNA id XM_021597297.2
length 2418
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110520169
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51573980 ~ 51582567 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTACTCAGATGCTACTTTAGACTGAGGGAGGATTGCTGCGTAGTGGATGCAAGTTCCTGTTTTGCAGAAAATGTGCTCCTTCACATTCAGGTTGGTGGATGGTGGTCTCATGTTCCTGCTCCTCAGTTTGACTAGGATTTCTGCCCAGAGAGAAATGTCCTtaaaccccactacaataggtcATTACACAGAGTCCCCATGTCAACTATTTGAAAAGTATGAAACTACTGTGACAGAGGGGGAGGCCCTTAGTTTGCCAGCCTACTATGACCTGAGTGAGTTGGTTTGGGCCAGCGTGACTGAGTTTACCTGGTACAGAAACAGAACCCAAGAGCTCTCGTCCTCTGAGGAAGAGCGTGTGCATCATCATGGACCGGTGCTCTTCTTCCTCCCCCTTTTAATCAACGACTCTGATCAGTACTACACCTACTGGAAAAAGGGAGCAGACACCTGCCTAATTTCTGTGACAGAGGTGATTGTGGTCAAAGCCCAACCGTTCGATCATTCAGTCCTGTTTGAAGATATCTCAGAGTCAGCAGAAAACATCGCTATCCCATGTCCTGACCCCGTGGAAAAACTATGCCAAGATGGAAAAGAAAACTTAGTCTGGTATAAGAATttcagtctcattccaaacgagTCTGAGAGAAATCTGTGGGTGTATGGCGCCTCCAAAGCAGACGAGGGCATCTAtacgtgtgtgtgcacgtgggAGCACAATGGGACGGTTCTCAACACTTCTGCATCCAGGAGACTAAAGATCCAAGCTCCCTCTGCCTCGCATCCTCCTCAGATCAACCTGCCTATAAACGGAAGCACAGAGACCACTGACCTGTACACCACTAAGAAGTTGAGGTGTGAAGCGTTTTGTGGGCAGAACATTGAAGACAACTGTCACGTGTGGTGGGAGATAAATGGAGTGAAAGTGCGCTCGCAGCAGCAAGGCTACTCTGTGAACACCACCAGCGAGGTGGAGGTATCTTCAATGCGAAGTATCTTCACAGCTATCCTGATCATAAACACAGTGACTATGAGGGACCTCCAGTCAAAGTTCACATGTGTTGCAATGAACGACCAGAAATGGGATTGTGCAGTGGTTACTCTCAAGCTAAGAGGGTTTATGTTTATGGGTCTATGTGTGGTGCTACTGCTCTTCGTCTTGCTAGCTGCTGTGGCTGTTAAAGTCTTTGACATCGATCTGGCGCTGCTCTTCCGTGGAGTTTTCAAATGCTGTGGTCGATCTGAGGATGGGAAGGTCTATGATGCTTACGTTGTCTACCAGATGGATGGCTTAGATCAGGAAAGGGAGGAGAAAGTGTATCACTTTGTGAGCAGCGTTCTGCCCACTGTCCTGGAGCAGAAGTGTGGCTTTAGACTCTTCATCCACGGCAGAGACGACTTACCTGGGGAAGACCGCATGGAGTTGGTGGAGGCCTGCATACGGCTGAGCAGGAGGCTGATTGTCATCCTGACCCCCAGCTCAAGCACATGGTCAGACTCAGAAGGTCAAAGCTCATGTGGCCAATGGGGCTGCTCGTCTTCGCTGACCACAGCAGAAGACTATGACTGTCAGGTGGGGCTCTACCAGGCTCTGGTCCACAGTGAGATGAGCGTCATCCTCATCCAGCTGGGGGATATGGGGGAGGGTGGctacacacacctgtcccctgGCCTGCAGCACCTGGTCCGCAAGAGTGCCCCCTTAATATGGCATGAGGGAAGGCGTGGGTCGATGCTGCCCAACTCAAGCTTCTGGAAGAGGGTGCGTTACATGATGCCTTGGCCGCGCTCGACTAGTTTTGACAACCAGTTAATATGACTGTTCTATGTGAACAATCAGGTCTGAGGACTTGAAGTGCGGTTGGAGGTCTGGGTTCTCTGAAAATCCTTATTCCATTCATAGAAATATCATTAATTATTCCAGTGCTGTGCAGAGATTTACACAGGTTAGCTGAGAACGTCACAAAAACGATGTGTACAATGTGGCAGAAGGccgtgtgttgttgtgattctggatggctagcaacaatgacaagaaactgccatgtggggaatagTAACTGGTTAATTTCAGCtagttttatcttgttcttgatTCCATGTCTTGTTTTTAGGTATTTTGACTGTcacgtctatgctaatatggcaaaatGTGCTTGCTtactaaccaacaactgtaacaatgtagttgagagacaacaagtgttCATTGTGCAActtttatgttttcaataaacattggagactaaatatagtttacatgttgtcaacaatctaaaccAACCCGTTCTGTTTGCTCCATATCTGTGCACACTtctgttttgttgctaaacaaccaacctgtcTATGGTGCCATAGTGACATATTGACTAAGGTCCTAAATCAATTGAAATGTACAACCTTTGAGAAACTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307164 lncRNA upstream 24068 51549729 ~ 51549937 (+) True G270369
TU307158 lncRNA upstream 35877 51537647 ~ 51538128 (+) True G270363
TU307092 lncRNA upstream 37630 51534387 ~ 51536375 (+) True G270298
TU307131 lncRNA upstream 100846 51472954 ~ 51473159 (+) True G270337
TU307130 lncRNA upstream 101060 51472586 ~ 51472945 (+) True G270336
TU307256 lncRNA downstream 100611 51683178 ~ 51683426 (+) True G270451
TU307306 lncRNA downstream 170119 51752686 ~ 51752919 (+) True G270497
TU307292 lncRNA downstream 185556 51768123 ~ 51769068 (+) True G270483
TU307295 lncRNA downstream 186902 51769469 ~ 51770130 (+) True G270486
TU307293 lncRNA downstream 188043 51770610 ~ 51771617 (+) True G270484
XM_036974558.1 mRNA upstream 41371 51504521 ~ 51532634 (+) False LOC110520168
XM_021597295.2 mRNA upstream 41371 51515255 ~ 51532634 (+) True LOC110520168
XM_021597294.2 mRNA upstream 73916 51490352 ~ 51500089 (+) True pdxka
XM_021597291.2 mRNA upstream 297594 51267073 ~ 51276411 (+) True LOC110520165
XM_021597290.2 mRNA upstream 311789 51258792 ~ 51262216 (+) True LOC110520164
XM_021597299.2 mRNA downstream 38787 51621354 ~ 51624586 (+) True LOC110520171
XM_021597302.2 mRNA downstream 176689 51759256 ~ 51766986 (+) True LOC110520174
XM_021597311.2 mRNA downstream 798364 52380931 ~ 52442609 (+) False LOC110520177
XM_036974561.1 mRNA downstream 823005 52405572 ~ 52442609 (+) True LOC110520177
XM_021597312.2 mRNA downstream 926208 52508775 ~ 52567291 (+) True LOC110520178
TU305958 other upstream 673728 50898589 ~ 50900277 (+) True G269291
TU305730 other upstream 969189 50602302 ~ 50604816 (+) True LOC110520146
TU305367 other upstream 1390979 50162301 ~ 50183026 (+) True hoxd3a
TU303972 other upstream 1718503 49836617 ~ 49855502 (+) True G267529
TU303803 other upstream 2018167 49554498 ~ 49555838 (+) True G267381
TU308945 other downstream 1584385 53166952 ~ 53172428 (+) True acvr2aa
TU309190 other downstream 1638860 53221427 ~ 53223265 (+) True LOC110520187
TU309244 other downstream 1708763 53291330 ~ 53336526 (+) False LOC110520190
TU309921 other downstream 2066258 53648825 ~ 53652431 (+) False G272965
TU309923 other downstream 2066258 53648825 ~ 53652152 (+) True G272965

Expression Profile