RNA id: NM_001281424.1


Basic Information

Item Value
RNA id NM_001281424.1
length 2304
RNA type mRNA
GC content 0.47
exon number 12
gene id il1rl1
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51596933 ~ 51619476 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttagccaggaagcctaggacaacaaaaatgtaaagcgtgtactgtatgacaaaATGATAAACGCTAATgacaaaacgtttttttttttctacaagtacgTTGCAAGTTCCTGTTTTACAGAAAATGCGCTCCTTCACATTCAGGTTGGTGGATGGTGGTCTCATGTTCCTGCTCCTCAGTTTGACTAGGATTTCTGCCCAGAGAGAAATGTCCTTAAACCCCACTACAATAAGTCATTACACAGAGTCCCCATGTCAACTATTTGACAAGTATGAAACTACTGTGACAGAGGGGGAGGCCCTTAGTTTGCCAGCCTACTATGACCTGAGTGAGTTGGTTTGGGCCAGCGTGACTGAGTTTACCTGGTACAGAAACAGAACCCAAGAGCTCTCGTCCTCTGAGGAAGAGCGTGTGCATCATCATGGACCGGTGCTCTTCTTCCTCCCCCTTTTAATCAACGACTCTGATCAGTACTACACCTACTGGAGAAAGGGAGCAGACACCTGCCTCATTTTTGTGACAGAGGTGATTGTGGTCAAAGCCCAACCGTTCGATCATTCAGTCTTGTTTAACGATATCTCAGAGTCAGCAGAAAACATCGCTATCCCATGTCCTGACCCTGTGGAAAAACTATGCCAAGATGGAAAAGATAACTTAGCCTGGTATAAGAATttcagtctcattccaaacgagTCTGAGAGAAATCTGTGGGTGTATGGCGCCTCCAAAGCAGACGAGGGCATCTAtacgtgtgtgtgcacgtgggAGCACAATGGGACGGTTCTCAACACTTCTGCATCCAGGAGACTAAAGATCCAAGCTCCCTCTGCCTCGCATCCTCCTCAGATCAACCTGCCTATAAACGGAAGCACAGAGACCACTGACCTGTACACCACTAAGAAGTTGAGGTGTGAAGCGTTTTGTGGGCAGAACATTGAAGACAACTGTCACGTGTGGTGGGAGATAAATGGAGTGAAAGTGCGCTCGCAGCAGCAAGGCTACTCGGTGAACACCACCAGTGAGGTGGAGGTATCTTCAATGCGGAGTATCTTCACAGCTATCCTGACCATAAACACAGTGACTATGAGGGACCTCCAGTCAAAGTTCACATGTGTTGCAATGAACGACCAGAAATGGAATTATGCAGTGGTTACTCTCAAGCTAAGAGGGTTTATGGGTCTATGTGTGGTGCTACTGCTCTTCTTCTTGCTAGCTGCTGTGGCTGTCAAAGTATTTGACATCGATCTGGCGCTCCTCTTCCGTGGAGTTTTCAAATGCTGTGGTCGATCTGAGGATGGGAAGGTCTATGATGCTTACGTTGTCTACCAGATGGATGGCTTAGATCAGGAAAGGGAGGAGAAAGTGTATCACTTTGTGAGCATTGTTCTGCCCACTGTCCTGGAGCAGAAGTGTGGCTTTAGACTCTTCATCCACGGCAGAGACGACTTACCTGGGGAAGACAACATGGAGTTGGTGGAGGACTGCATGCGACTGAGCAGGAGGCTGATTGTCATCCTGACCCCTAGCTCAAGCACACGGTCAGGCTCAGGAGGTCAAGGGTCATGTGGCCAATGGGGCTACTCGTCTTCGTTGACCACAGCGGAGGACTATGACTGTCAGGTGGGGCTCCTCCAGGCTCTGGTCCACAGTGAGATGAACGTTATCCTCATCCAGCTGGGGGACATGGGGGAGGGTGGCTACACACACCTGCCCCCCGGCCTGCAGCACCTGGTCCGCAAGAGTGCCCCCTTAATGTGGCATGAGGGAAGGCGTGGGTCGACGCTGCCCAACTCAAGCTTCTGGAAGAGGGTGCGTTACATGATGCCTTGGCCGCGCTCAACTAGTTTTGACAACCAGTTAATATGACTGTTCTATGTGAACATTCAGGTCTGAGGACTTGACGTGCGTGTGGAGGTCTGGGTTCTCTGAAAATCCTTATTCCATTCATATAAATATCATTAATTATTCCAGTGCTGTGCAGAGATATACACAGGTTAGCTGAGAACGTCACAAAAACGATGTGTACAATGTGGCAGAAGGCCGTGTGTttttgtgattctggatggctagcaacaatgacaagaaactgccatgtggggaatagTAAGTGGCTAATTTCAGCtagttttatcttgttcttgatTCCATGTCTTGTTTTTAGGTATTTTGACTGATGTCATTTTTATGCTAATATGGCCAAATGTGCTTGCTtactaaccaacaactgtaacaatgtatttctgaGAGAACAAGTGTTCATTGTGTAACttttttatgttttcaataaacattggagactaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307463 lncRNA downstream 51036 51552787 ~ 51554680 (-) False LOC110520170
TU307464 lncRNA downstream 51781 51552787 ~ 51553935 (-) True LOC110520170
TU307453 lncRNA downstream 58880 51546561 ~ 51546836 (-) True G270627
TU307452 lncRNA downstream 59296 51545686 ~ 51546420 (-) True G270626
TU307451 lncRNA downstream 62403 51542803 ~ 51543313 (-) True G270625
TU307525 lncRNA upstream 46383 51665525 ~ 51668106 (-) True G270682
TU307574 lncRNA upstream 140002 51759144 ~ 51760413 (-) True G270730
TU307576 lncRNA upstream 151480 51770622 ~ 51771489 (-) True G270732
TU307617 lncRNA upstream 211729 51830871 ~ 51844042 (-) True LOC110520176
TU307650 lncRNA upstream 239912 51859054 ~ 51859385 (-) True G270806
XM_021597298.2 mRNA downstream 46377 51550697 ~ 51559339 (-) False LOC110520170
XM_036974557.1 mRNA downstream 127206 51472148 ~ 51478510 (-) False fgf9
XM_021583046.2 mRNA downstream 135040 51464211 ~ 51470676 (-) True LOC110504232
XM_021597292.2 mRNA downstream 216134 51276921 ~ 51389582 (-) True LOC110520166
XM_021597293.2 mRNA downstream 216135 51276921 ~ 51389581 (-) False LOC110520166
XM_036974559.1 mRNA upstream 11647 51630789 ~ 51680912 (-) False LOC110520172
XR_005048987.1 mRNA upstream 11647 51630789 ~ 51680912 (-) True LOC110520172
NM_001124252.1 mRNA upstream 69693 51688835 ~ 51734299 (-) True LOC100135875
XM_036974560.1 mRNA upstream 198422 51817564 ~ 51842848 (-) False LOC110520176
XM_021597305.2 mRNA upstream 337192 51956334 ~ 52075676 (-) False LOC110520175
TU307459 other downstream 5486 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 5818 51597399 ~ 51599898 (-) False il1rl1
TU307414 other downstream 131577 51473324 ~ 51474139 (-) True fgf9
TU306786 other downstream 476406 51128440 ~ 51129310 (-) True LOC110520160
TU306341 other downstream 1162844 50440205 ~ 50442872 (-) True LOC110520139
TU309282 other upstream 1089041 52708183 ~ 52708816 (-) True LOC110520182
TU309646 other upstream 1630784 53249926 ~ 53251084 (-) True G272713
TU311493 other upstream 3060776 54679918 ~ 54682805 (-) True G274344
TU312299 other upstream 3484352 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 3791001 55410143 ~ 55411487 (-) False G275250

Expression Profile