RNA id: XM_036974560.1


Basic Information

Item Value
RNA id XM_036974560.1
length 2700
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC110520176
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51817564 ~ 51844042 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagacaaacaaacagGCGAAACCAGAAGCCATGACACAACCCATGCCAACCAGTCTGAGTGAAACAGCAGACATGATAACCCCTGTTGTTTGCGATGTGGATGATGGATACTTTGATGCCATACTAGGAGCTGTCATTGCTGCTGTGGTCCTGGTGCTTCTTTGCTTGGCAGTGGTAGTGATTCGCTACATGTACCGGCACAAAGGCACCTACCACACCAATGAGGCCAAGGGCACCGAGTTTGCCGAAACAGCGGATGCGGCACTTCGAGGCGACCCGGCTCTGCAGGATGCCATGGACGAGAGCAAGAAGGAGTACTTCATCTGATCTCAGGAGCGGCACCCCCTGCTGTTTACAATGAACTTGGTCTGCCAAAATAAGTGTATTTTGGGGTTGGAGGATAGAAAAGCTTGGAGAGGGGGTGAAAATCGCCTCGCCATACTGAGGCTCAGAGTGACTGTTCAGACAATCTACCAAAGAAACATCAGATGCATCTTACAATAATATCAATTCAGTATTCTTCCccctatctgtttctctctccaatGTATTTGGCATATCACCATGCATATACACTTTTCAAAACACTGACTTTGCTATTAGGAGGCTATATTTTTGTCATGCAGAAGTGGGGAACAGTGAGGAAAAAAGCTTCTTATGAGGATCTAAGGCACCCATAGACACCTATGCCTTCTGTGGAAAAAGCAAGAGTATTCCTAGAACACAGAGTTGTAAGTAATGGACCCTTCTCAAAAACGTCAATGATGAAACTCAAGGAAGTGAATGAATGTAGAATTTCTCTACAAGCTCACAAAACAAACTCTATTTTCTAATGGTATTGAAACCAAAGCAAAATCAATTTTGTAAAGAAGAAACCTCTCAATAAATAGTAGGAGGAAAACATGGAACAAATGATGTCGAAGGAAGCGACTTTTACTGTACGAAATTAATCACCAATGGGCCCTTACCAAAATCCTGAATACGTCTGGTTGCTCCCGGAATTACTTTTCAATAACTTTTGTTTGGATTGTGATTGTCAATTTGTGAGTGTTCAAGGGAATGCCTTTAGCAATGGTTAATAACTAGTTAATTACAGATCCAAAGAGATAAAGTGATAGCTGAACAACCTAAAACTGCAGGAAGACCTTGCCGGATGAGGTTAGTTGTGAATACCAAAGTGATGCTCTGTCttagacagggaggatcaggGTTCAAACAGGTTCCTAATGACATTTTCTCACTAGTAGCCAAAAATCAATTCCAAGTATATTGACATGCTATTTGGATAGCCACAGAAAACCAAACATATAGTGTGATCTTCCCATCCTGATTTGGGCTTAATAAATTACACTAACAACAAAGTATTGTGCAGTTTGTGTCCATACATTTTTTAGCATGAACATTATAGACCTGACATTTTTTGGATTGATGCAGAAATCAAGGATGACTTTGTGAGCACCAGAGGTTCCTGTATAAATGTCTAAGGGTGGATAAGTGTTGTGATCTGGTCAAGGCCGTAACCATATTTGTAGAACTATTTGTGGGGCAATTTCTTGGAACACTGTAATGATGTTTTTTAAATTGCCTTGCTAAGGAAAAATATTGAAGTACAACTCATTCAGCTGTAACTGCACTGCCTCAGTAAAACGACAACTGCAATCATTGGATATTGTTTGTGACGTTCCGCCAGGATGATACTAGACAAAAATGAGAACActcaaggatttttttttttttgtcaattaattTTATTGTGGTGGAAATGGCAACTGAaaataagcccccccccccccccccccatgctccAAATCTAATTTCAATTCCCCAAACCCTTTTTCTCTTCTCTGCTGGCTTTGATTAATGTGAACTTTTCTTTGTCTCCATGATTGCCTAGTTCTGAAAGAATAGAAGGGACCGTTTTCTTGATTCAAAAAAGAAGGTTTGTTAGAAGGGACAATGCAAGATGGCTCCTCTGCAAATTATGCTTTGATAACTAGTGCTGATGCAAACAAGTATAAGACACATACGCAGCAATGTAACTATTCACTCTCCTGAGGgcggacactttttttttttagatcacACCTTAAATGGAGTGTAAGACAATTGCTaccaaaatgtatttaatctcTGCTGAAGATAACGAAATTCTCTCCAGCTTGTAATTTCCTAACACAAGATAAAAATGAGAAGACTTGTAGTAAGAGGATGCATGGCTATGCCAAGGCATAGCACTTAACAGAAGCTGTTCCAGAACTGAAGATACCTTGATCCCGGGATTGTGCATAATTTGTTTGCTTTTGGCCCTCTTTGCAATAGTGCATGTCATTGACTTTCACTATAAGTGTATTTCATACATTAATAGCAGCTTTCAAACTGAGAGCTCTCTGTAACTACAGTTCATTTTTGTTTTTTCATTCTTAACTGACAGGAGACCACTGACattgagaaacagagaggagagatctGAGCTAGCCTCAGCGGCAGTAAGAAATACAACTTTACTCTCTGTTTCTTTTGCACTGTGGGATTACCAGATTCAAGTGGCAGGAATTTACTCTTTACGTCCCCTTCACCTTGAATGTTTTCTTAACTGTTGAATTATTCATGTTCACGCATTATTTTGAAgctcaaatgttttatttatttccacGAGGTAAATCCAACTAAAAGCAAATAAAAGGCATTCTAAGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307576 lncRNA downstream 46075 51770622 ~ 51771489 (-) True G270732
TU307574 lncRNA downstream 57151 51759144 ~ 51760413 (-) True G270730
TU307525 lncRNA downstream 149458 51665525 ~ 51668106 (-) True G270682
TU307463 lncRNA downstream 262884 51552787 ~ 51554680 (-) False LOC110520170
TU307464 lncRNA downstream 263629 51552787 ~ 51553935 (-) True LOC110520170
TU307650 lncRNA upstream 16206 51859054 ~ 51859385 (-) True G270806
TU307654 lncRNA upstream 18873 51861721 ~ 51862036 (-) True G270810
TU307663 lncRNA upstream 31122 51873970 ~ 51874196 (-) True G270819
TU308214 lncRNA upstream 89770 51932618 ~ 51936246 (-) True G271339
TU308215 lncRNA upstream 90603 51933451 ~ 52019756 (-) True G271340
NM_001124252.1 mRNA downstream 83265 51688835 ~ 51734299 (-) True LOC100135875
XM_036974559.1 mRNA downstream 136652 51630789 ~ 51680912 (-) False LOC110520172
XR_005048987.1 mRNA downstream 136652 51630789 ~ 51680912 (-) True LOC110520172
XM_036963761.1 mRNA downstream 198088 51596933 ~ 51619476 (-) False il1rl1
XM_036963750.1 mRNA downstream 198090 51596933 ~ 51619474 (-) False il1rl1
XM_021597305.2 mRNA upstream 113486 51956334 ~ 52075676 (-) False LOC110520175
XM_021597306.2 mRNA upstream 113486 51956334 ~ 52075676 (-) True LOC110520175
XM_021597319.2 mRNA upstream 844075 52686923 ~ 52692178 (-) True LOC110520181
XM_036964942.1 mRNA upstream 862104 52704952 ~ 52708746 (-) False LOC110520182
XM_036974564.1 mRNA upstream 937933 52780781 ~ 52826345 (-) False gtdc1
TU307459 other downstream 217334 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 217666 51597399 ~ 51599898 (-) False il1rl1
TU307414 other downstream 343425 51473324 ~ 51474139 (-) True fgf9
TU306786 other downstream 688254 51128440 ~ 51129310 (-) True LOC110520160
TU306341 other downstream 1374692 50440205 ~ 50442872 (-) True LOC110520139
TU309282 other upstream 865335 52708183 ~ 52708816 (-) True LOC110520182
TU309646 other upstream 1407078 53249926 ~ 53251084 (-) True G272713
TU311493 other upstream 2837070 54679918 ~ 54682805 (-) True G274344
TU312299 other upstream 3260646 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 3567295 55410143 ~ 55411487 (-) False G275250

Expression Profile