RNA id: XM_021597306.2


Basic Information

Item Value
RNA id XM_021597306.2
length 5837
RNA type mRNA
GC content 0.51
exon number 24
gene id LOC110520175
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51956334 ~ 52075676 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagacgcaccgATGTGACGGAGATTTGGGAGCAGCAGCAGAGTAGAGGGTGTTGTGCGCGCGCTAGCAGACCTGCCTCGTGATGGTTCTGCAGTGAATAGGTGAAGTCAAAGCAGCTGGAATTATAACACACTGCTCGGAAGTACGGTCATCGGAGGTATTTTCACTGAGGATATACAGAAGCCTGGATATCTGTGGCAAGCAAGGTGGAAATGTCATCTCTGGCCATCGCCTTTATTCTCACGGTGCTTGGCGTTGTCAGTGCTGCGCTGGCGGCCAGTCACTATAACTGTGATGGCCCTTTGGGATCAAATCTGCCCCAGGCCTCATTTCAGAGTTCCTCGCAGTCCTCCACCAGCAACGTTCCACACTTCTCCAAGCTCAACAGAAGAGATGGAGCGGGAGGCTGGTCTCCccaggtgacagacagacagccgtgGCTGCAGCTGGACCTCAGGGACAGGATGGAGGTGACGGCCGTCGCCACACAGGGGCGCTTCGGCAGCTCAGACTGGGTCAGCGGCTACCTGCTGCTCTTCAGTGACACCGGCCTAGCCTGGAAGCAATACCGACAGGAGGATGGGGTTGGGaGGTTTGTGGGGAACGTGAACGCTGATGGCGTCGTCCACCACAAGTTGTCCCACTCTATCAGAAGCCGCTTCCTGCGCTTCGTCCCGCTGGACTGGAACCCCAGTGGCTGGGTGGGACTCAGAGTGGAGGTGTACGGCTGTGCCTACAAATCGTACGTGGCAGACTTTGATGGCAGAAGCTCCCTGCTCTACCGGTTTAACCAGAAGTCCATGAGCACGGTGAAAGATGTGATCTCGCTGCGATTCAAGAGCCGCCAGGCTGAGGGGGTGCTGCTCCACGGAGAGGGTCAGAGGGGCGACTACATCACTCTGGAGCTGCACCGGGGCAGGCTGGCCCTCTACCTCAACCTGGATGACACCCGGTTGCGGTTCAGCAGTGGTCGTGTTGCGGTCACTCTGGGCAGTCTTCTGGATGACCAGCACTGGCACTCTGTCCTCATCGAGCGCTTCAACAAGCAAGTCAACCTCACCGTGGACACCCACACACAGCACTTCAGGACCAAGGGGGAAGGAGACTCTCTGGAGGTGGACTATGAGCTCAGCTTCGGGGGCATCCCACTACCAGGTAAGCCTGGCACCTTCCTGAGGAAGAACTTCCATGGTTGCATCGAGAACCTCTACTACAACGGGATCAACATCATTGACCTAGCCAAGCGACGCAAGCCTCAGATCTACAGTGTGGGCAACGTGACCTTCTCGTGCTCGCAGCCCCAGCTGGTGTCCACCACATTCCTGAGCTCCAGCAGCAGCTTCCTGTCGCTCCCGGCCACGCCGTCTGCTTCAGGAGGCTTCACAGTGCGTTTCCAGTTCAGAACATGGAACCCAGATGGGCTACTGCTCTCCACCCAGCTGTCCCTGGAGCCCCAGAGACTGGAGCTGCAGATAAGCAACAGCCGGCTACGCTTGACCCATCACACGTCAGCCCAGCAGAAAGAAGAGGTCTCCACCGGTCACAGGGTGAATGATGGACTGTGGCACACCGTGAGTCTCGGCTCCCGAAGTCTCCAGGTCACCATGACTCTGGACAGCGAGCCGTCCTCAACCATCGAACTGGCGGACCACATGGACGCAGGAGACAACCTCTACTTTGGAGCTGACCCAGGCTGTGAGAACCCCATGTTGGCGTTCCAGGGTTGCATGCGTCTCATCTCCATCAACAGCCAGCCCATGGACCTGAACCTGGTGCAACAAGGACGGCTGGGAAAGTACAAGGAGCTGCAGTTTGACACATGTGGCATCCATGACAGATGTCTGCCCAACTTCTGTGAACATGGAGGGCAGTGTTCCCAGTCCTGGAACACCTTCTACTGTGACTGCTCTGGAACAGGATACGCTGGAGCCACCTGCCACAACTCCATCTATGAGGCATCATGTGAGGCCTAcaggctgactggcagctcctcaGGCTACTTCTCCATTGATCCAGATGGCAGTGGACCTCTGGGGGCGACACAGGTCTTTTGCAACATGACAGAGGACAAGGTGTGGACAGTGGTGACCCACAACAGCACAGATCCAGTCAGGGTCCAGGGTTCTACTCTCCAAAAGCCCTACGTTATGAAGTTCAACTACAGCGCCTCACCTGAACAACTGATGGCCCTCGTGGCCGGGTCAGAGCAGTGTCAACAGGAAGTAGTATACAGCTGCAGGAAGTCCCGCCTCTTTAACACTTGGGATGGCAGCCCCCTGTCCTGGTGGGTGGACCAGGGTGGAGAGAGACGGACTTACTGGGGAGGCTTCCTACCGGGGGTTCAGCAGTGCTCCTGCAGCCTGGAGGAAAACTGCATGGACATGAACTACTTCTGCAACTGTGACGCCAACACAGACTCATGGGCTAATGACACAGGAGTCCTCTCCTACAAAGAGCACTTACCAGTGAGTGAGATCGTGATTGGAGACACCAACAGAACAGGCTCTGAGGCACTCTACAGAATCGGCCCACTGCGTTGTTATGGTGACAAGTCTGTGTGGAATGCGGCGTCCTTCTACCAGGAGTCATCCTACCTGCACTTCCCAACCCTCCAGGCAGAGCTCAGCGCTGACATCTCCTTCTACTTCAAGACCAGCGTCCCATCAGGAGTCTTTCTGGAGGACCTGGGCCTCAAGGACTTCATCAGAGTGGAGCTTAGCTCTCCATCCGTGGTGACGTTCTCCTTTGACGTGGGAAACGGGGGGGTGGTCCTTGCCGTCAAGTCCCATGTGCCCCTGAATGACAGGCAGTGGCACTATGTGAGGGCAGAGCGCAATGTGAAGGAGGCCTCTCTGCAGGTGGACCAGCTGCCCTTACGCTTCCTGGAAGCTCCATCTGATGGACACCTCCGCCTCCGGCTCAACAGCCAACTGTTTGTGGGGGGAACAGCGGCCAGGCAGAGGGGCTTCATGGGCTGCATCAGAACTCTGAATATAAACGGCATGACCTTTAACCTGGAGGAGCGGGCTAAGATGACTCCGGGCGTAAGTGCAGGCTGCCCCGGCCACTGCAGCGGCTCCAGCAGTCTCTGCCACAACAGAGGGAGGTGCATCGAGAAGAACAGCGGCTATGTCTGTGACTGCTCCCAGTCTGCTTACGGGGGACCCTCCTGCAAGGAAGAGGTGTCTGTGTCATTTGACAGAGAGTCGTCGGTGACCTACACCTTCCAGGAGCCTTTCTCTGTGATGCAGAACAGGAGCTCCCAGGCGTCCAGAGTCTACAGAGAGAGCACTAGGGCCAGAGAGAACATGGCTTTCAGCTTCATGACCACACAAAGCCCTGCCATGCTGCTCACTGTCAGCACCTTCAGCCAGCAGTACATAGCAGTCATCCTGGCACTCAATGGGAGTCTCCAGATCTGGTATCGTCTCCATGTGTACAGGAAGCCAGATGTgttcagccccagccccagcagcCTGGCAGACGGACGCCTCCACCGTATCAGAATCCACCGTCAGGGGAAAGATGTCTACCTACAGATCGATCAGGACATCCACAGAAAGTACACCCTGTCATCTGATGCGGAGTTGATATTAATCAGATCATTGACTTTGGGCAAAGTCATCGGAGGAGAAAATTTTGATGAGGAGGTGATGCAGGCAGGATCTAAGGGCTTCATTGGCTGCCTCTCATCAGTCCAGTTCAATCACGTGGCTCCACTGAAGGCAGCGCTACTAAACCGTGGCAGCTCATTGGTCAGCGTACGGGGTCACCTGGTGGAGTCTAACTGTGGGGTGCTGGCTGACTCAACAACTTCACACCCACTCTCAGATCAAGCTGCGAAAGCAAACAAAGATAAGGAGCAGCAAGGCAATGACACCCGGCATGATTCAGCAGTAattggagGAGTGGTGACAGCAGTGGTCTTCATCActctgtgtgtggtggtggtgatgaccCGTTTCCTTTACCAACACCGGCAAGCCCAGAGAGATGCCAGCATCAAGGAGAAGGAGCACCGACACAACCTGGAAACAGCCTACCGGAGAGAAGCAGCCTACCAGGCCGAACCGGTCTACCGGGCCGAATCAGCCTACCGGACAGAGCTCCACCTTCACGACAGCGCCACCCTCAGGGACAACAGGGAGTACTACATCTGACCACAGCATCCAGCCAAGCCTTTTAGCCATCGCTGCTTACCTTTATTCTGTTTTGTCCAGCTGTCTGCACGGGAGGAGACATCCAGACTTTTTCCTCGCTCCTCTGCGGTAGAAATGAAGAATTCATTCTCCTTTAGGGAACTGTGGGAATATCCTGGTGGGGAACGTCTTCCCATTTCTGTCTAGATATTTCGTAGGACAGGACTTGTAGCTGCAAAGATGTTGACCGGTCGGCTTACGAATGCTGGCGATGGGACAGGAAAATGGTGCCATAAGAGATTGAAGCATTTGGGTATGGTGCAACGGATTTATCCAATGATAGGAATACAAAGAGCCTGGAATGGTTACAATAGGCAGGCAATGTTATAGGAAGTGTAGGCAATGTTATGGTATAAAGCCACATAGAGGAAAACATGGACAGTGGCACTGTTTTGGTGGCTCAATGTATGTAGATTGCGAAGATTAAACTCTCCCACTGTCATGTGGGGAAGAAATCTCATGTTCTGACTCAGAGAATCTACGCACACATGCAATGAATCTATTTCAAATTCCTAAGAAAATGGTTAGAAGTTTAACAGAATGGAATGGTTGAAAAGACAAAACGCAAAGGCCATCTTAGATAATATACTATTGAAAAACACAGAGTAAGATAAGTATTGTTTTACTGATCTTGATAATGCAGTGATTAATTAAGATTAAATTAATTCCACAAAGAACTGATATTAAAATTAAATCTCCATTTCAATATATCCTTAAATAAAGCCATTTAAAAATGAGGTGCCCCGGACCGGTTTCCTACATTATAATTATTTGAAAGTTTGATTTAAAATTCTTCTTTCTCCACAATGTTCTTGAGGTTTCTAATACACATGCTGGGCTGGATTGTATTGCTGCAAGAAAGGGAATGTAAAAATAACCCAGCTAACTGGAACATCTGCTAGCGGTCCCCTAGCAAGAAAACCTAACCATCATATACCACAGAAGTGGCTGCCGGGCCAAGGGTTAGAGGAGTCTTCAAAGAGCTGCCATATACAAAGCTTAAGTTGTTCACCCAAGCTTTTTAGATTTATTTTGGGTATTTTTATTGTTTCGTTTGTTTCCTTCAGTAAACATTTTGTTCTGTCACACGTTTGATCTGTTCACGCATTTGCTACCattttatattgtattttttattaaaagTTTTTAATTCATTGCTACTGCTTGACGTCAACAGTATCCCTGTGTTAGATCTACAGTATAAAGTGATTAGAAAATACTGGTATTTAATGCTGGATATTGATGCTTAGTTTAGTGTAATTTTTCTCTGAAAATTAAGTGGGAAAGGATAATCGGCACTAAGTGCAAAATAACACAGTTTGACAGTTTATCAATAATAAAACAGAGAATGAGAATGAAAATCGTATACGCAAACATCTTTGATGAGCAACAGTTCATAAACACACCATCACCAAAATAATGAAATTGGCGGAAGTATTGCCTGAAAACATTTTTTCCTTTCATATTAAAGTGTCCTTGACAGCAAGTTATGGTTAACCTCTGAGACTCTGAAATCCTTTTTGTACTCATGTTGATATTGTGGTTATTTTGAGGGCCCATTTTGTATGGCTATAATTGTACAGGTATATTATGAATATATGTTTAATAAAACCAAACATTCTTTTTGAAAAATAA

Function

GO: NA

KEGG:

id description
K24338 CNTNAP5; contactin associated protein-like 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308214 lncRNA downstream 20088 51932618 ~ 51936246 (-) True G271339
TU307663 lncRNA downstream 82138 51873970 ~ 51874196 (-) True G270819
TU307654 lncRNA downstream 94298 51861721 ~ 51862036 (-) True G270810
TU307650 lncRNA downstream 96949 51859054 ~ 51859385 (-) True G270806
TU307617 lncRNA downstream 112292 51830871 ~ 51844042 (-) True LOC110520176
TU308583 lncRNA upstream 369626 52445302 ~ 52450465 (-) True G271701
TU308789 lncRNA upstream 559474 52635150 ~ 52635378 (-) True G271901
TU308799 lncRNA upstream 563818 52639494 ~ 52639813 (-) True G271911
TU308818 lncRNA upstream 578201 52653877 ~ 52654107 (-) True G271930
TU308848 lncRNA upstream 597017 52672693 ~ 52673115 (-) True G271959
XM_036974560.1 mRNA downstream 113486 51817564 ~ 51842848 (-) False LOC110520176
NM_001124252.1 mRNA downstream 222035 51688835 ~ 51734299 (-) True LOC100135875
XM_036974559.1 mRNA downstream 275422 51630789 ~ 51680912 (-) False LOC110520172
XR_005048987.1 mRNA downstream 275422 51630789 ~ 51680912 (-) True LOC110520172
NM_001281424.1 mRNA downstream 337192 51605716 ~ 51619142 (-) False il1rl1
XM_021597319.2 mRNA upstream 611247 52686923 ~ 52692178 (-) True LOC110520181
XM_036964942.1 mRNA upstream 629276 52704952 ~ 52708746 (-) False LOC110520182
XM_036974564.1 mRNA upstream 705105 52780781 ~ 52826345 (-) False gtdc1
XM_036974565.1 mRNA upstream 705105 52780781 ~ 52826346 (-) False gtdc1
XM_036974566.1 mRNA upstream 705105 52780781 ~ 52826347 (-) False gtdc1
TU307459 other downstream 356104 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 356436 51597399 ~ 51599898 (-) False il1rl1
TU307414 other downstream 482195 51473324 ~ 51474139 (-) True fgf9
TU306786 other downstream 827024 51128440 ~ 51129310 (-) True LOC110520160
TU306341 other downstream 1513462 50440205 ~ 50442872 (-) True LOC110520139
TU309282 other upstream 632507 52708183 ~ 52708816 (-) True LOC110520182
TU309646 other upstream 1174250 53249926 ~ 53251084 (-) True G272713
TU311493 other upstream 2604242 54679918 ~ 54682805 (-) True G274344
TU312299 other upstream 3027818 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 3334467 55410143 ~ 55411487 (-) False G275250

Expression Profile