RNA id: XM_021597319.2


Basic Information

Item Value
RNA id XM_021597319.2
length 1628
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC110520181
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 52686923 ~ 52692178 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTTTAAGGAAGTGCTTTTCATTCGCTCGTCGTAGTTTAATTGTTTCCTTGTATGGAGCTGAGCGGGATTGGATTCTACGTAATCGAAACTACACAATAAGAGGAAGGGAACCGAACCTCAAGGTCTGCCTATCAACCACCAGCACAAGAAGTGATTGAACACCAACCAGATCTCACCATGTCAGACACGGTCCCCCTGGAACAGAGGTACAAGGCCAGCATGGTCCTGAGTGGAGCAGGAGATGCCCTGGGCTACAACCATGGTACCTGGGAATTTGAAAATGATGGAGTGTTAATACATGAGCAAGTTCAGAAGAGAGGAGGTCTAGAGAAGCTGGATGCCATAGACTTCCCTGTTAGTGATGACACCGTCATGCACCTGGCTACAGCTGAGGCTCTGGTCAAGGTGGGGGAAGGGGCATCCCTCCCTGTGCTGTATCAAGTCCTGGTGGAGAAGTACATTGTAAGCATGACAGACATGGCTGGAAGAGGAGCAGGCCTCACCTGCCGCAACAGTGTTGCAAGGCACAGACAGAGAACTGACGAGGACATTAAGATTCCCTTCGACAAGAGGGGCGGAGGGTGTGGGGCAGCCATGAGGGCCATGTGTATCGGCCTGCGCTTCCCCGACCCTGAGCAGGAGCACCTGCTGATAGCAGTAAGTGTGGAGAGTGGGCGTCtgacccaccaccaccccacaggCTACCTGGGAGCCCTGGCTGCAGCCCTGTTCACGGCCTACGCAGTGAGGGGCACCCTACCTGTGGAGGCCTGGGGACACAGACTCATGGAGGTCCTGGACAAAGCCAAGGAGTACGTCAGGCATTCGGGCAATTGTGTGGAGCTGAACATGGCGCACTGGGACTACTTTGGAATTCAGTGGAAGTCCTATTTAGAAAAAAGAGGCATTCTGGATGGAAAGAGCAAACCTCAGTTCCCAGAGTCCTACggtgtgaaggagagggagagtttCTATAGGGCGGTGAGCTTCAAGGGTTGTGGTGGCGCCAGTGGGCATGATGCTCCCATGATAGCTTACGATGCCCTCCTGAGGGCAGGTGACTCCTGGGTTGAGCTGGCCAATCATGGCTTCTTCCATGGCGGGGACAGCGACTCCACGGCCGTGATCGCTGCTGCCTGGTGGGGCGCACTGTTCGGCTTCAGAGGGGTGCCAAAGATCAACTACCAGAGGCTTGAGTACCGTGACAGACTATCCAAACTAGGGGAACAGCTATACAAGCTCAGGGGAAAACCTCTAGGTTCTTTGAAAGTGTGATGCAAATTAAACCAATAGATGGTTAAAGGTGAAATTCATTACATTTCCTGCAGATCTGGAATTTCAGCTACTTAAACTTTTTTTGACACTAATTTTGCATCCCTTGgtttttttaaaacatatttttaaagAATATTACTGGATCTGGAAAGATTTATAGAGTATTTATGATCTCAAACTGCAGTctacctactgactaggagatgGAGCCAGAATGTTCTGTATAAtaacaaacattttctgtaatggcaacatttttttatttatttccagCCTATAATCAAGTCTTCACTAACATACATTGATGCTGCAGTTGTTGCACTATTATTGTACCATTTTAGCTATGGCAGA

Function

GO:

id name namespace
GO:0051725 protein de-ADP-ribosylation biological_process
GO:0003875 ADP-ribosylarginine hydrolase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01245 ADPRH; ADP-ribosylarginine hydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308857 lncRNA downstream 4290 52675119 ~ 52682633 (-) True G271968
TU308848 lncRNA downstream 13808 52672693 ~ 52673115 (-) True G271959
TU308818 lncRNA downstream 32816 52653877 ~ 52654107 (-) True G271930
TU308799 lncRNA downstream 47110 52639494 ~ 52639813 (-) True G271911
TU308789 lncRNA downstream 51545 52635150 ~ 52635378 (-) True G271901
TU309283 lncRNA upstream 1778 52693956 ~ 52707422 (-) False LOC110520182
TU309323 lncRNA upstream 78154 52770332 ~ 52770543 (-) True G272408
TU309327 lncRNA upstream 80908 52773086 ~ 52773290 (-) True G272412
TU309299 lncRNA upstream 83415 52775593 ~ 52776534 (-) True G272384
TU309332 lncRNA upstream 96823 52789001 ~ 52789228 (-) True G272417
XM_021597305.2 mRNA downstream 611247 51956334 ~ 52075676 (-) False LOC110520175
XM_021597306.2 mRNA downstream 611247 51956334 ~ 52075676 (-) True LOC110520175
XM_036974560.1 mRNA downstream 844075 51817564 ~ 51842848 (-) False LOC110520176
NM_001124252.1 mRNA downstream 952624 51688835 ~ 51734299 (-) True LOC100135875
XM_036974559.1 mRNA downstream 1006011 51630789 ~ 51680912 (-) False LOC110520172
XM_036964942.1 mRNA upstream 12774 52704952 ~ 52708746 (-) False LOC110520182
XM_036974564.1 mRNA upstream 88603 52780781 ~ 52826345 (-) False gtdc1
XM_036974565.1 mRNA upstream 88603 52780781 ~ 52826346 (-) False gtdc1
XM_036974566.1 mRNA upstream 88603 52780781 ~ 52826347 (-) False gtdc1
XM_036974569.1 mRNA upstream 88603 52780781 ~ 52826348 (-) False gtdc1
TU307459 other downstream 1086693 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 1087025 51597399 ~ 51599898 (-) False il1rl1
TU307414 other downstream 1212784 51473324 ~ 51474139 (-) True fgf9
TU306786 other downstream 1557613 51128440 ~ 51129310 (-) True LOC110520160
TU306341 other downstream 2244051 50440205 ~ 50442872 (-) True LOC110520139
TU309282 other upstream 16005 52708183 ~ 52708816 (-) True LOC110520182
TU309646 other upstream 557748 53249926 ~ 53251084 (-) True G272713
TU311493 other upstream 1987740 54679918 ~ 54682805 (-) True G274344
TU312299 other upstream 2411316 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 2717965 55410143 ~ 55411487 (-) False G275250

Expression Profile