RNA id: XM_036964942.1


Basic Information

Item Value
RNA id XM_036964942.1
length 2524
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC110520182
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 52693956 ~ 52708816 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACTGCACTAGCTCGTATTGGGGACATTCAATAATTCTACACAATACATCCATATCTCTACATTCTGTGACGTTTGTCTTTTATCATTGATGGTTCAGTGACTCTCATTGGGGTTGACCGCCTCATATCTCGTCTCAACAGCTTTTTTCTGTATTTTATATTAATCAACATTCAATGTCACATTCAATTAGTCAATGATCCAATGGAATCTCTTACAGAAGTGATTGAACACCATCCAGATCTCACCATGTCAGACACGGTCCCCCTGGAACAGAGGTACAAGGCCAGCATGGTCCTGAGTGGAGCAGGAGATGCCCTGGGCTGCAACCATGGTACCTGGGAATTTGAAAATGATGGAGTGTTAATACATGAGCAAGTTCAGAAGAGAGGAGGTCTAGAGAAGCTGGATGCCATAGACTTCCCTGTTAGTGATGACACCGTCATGCACCTGGCTACAGCTGAGGCTCTGGTCAAGgtaggggagggggaaggggcgTCCCTCCCTGTGCTGTATCGAGCCCTGGTGGAGAAGTACATTGTAAGCATGACAGACATGGCTGGAAGAGGAGCAGGGGACCTACGTGGTTCTGGTACCGGTTCTGTGGACACCcaccatgctctacgtGAGGGGCACCCTGCCTGTGGACACAGACTCATGGAGGTCCTGGACAAAGCCAAGGAGTACGTCAGGCATTCGGGCAATTGTGTGGAGCTGAACATGGCGCACTGGGACTACTTTGGAATTCAGTGGAAATCCTATTTAGAAAAGAGAGGCATTCTGGATGGAAAGAGCAAACCTCAGTTCCCAGACTTCTACggtgtgaaggagagggagagtttCTATAGGGCGGTGAGCTTCAAGGGTTGTGGTGGCGCCAGTGGGCATGATGCTCCCATGATAGCTTACGATGCCCTCCTGAGGGCAGGCGACTCCTGGGTTGAGCTGGCCAATCATGGCTTCTTCCATGGCGGGGACAGCGACTCCACGGCCGTGATCGCTGCTGCCTGGTGGGGCGCACTGTTCGGCTTCAGAGGGGTGCCAGAGATCAACTACCAGAGGCTTGAGTACCGTGACAGACTATCCAAACTAGGGGAACGGCTATACAAGCTCAGGGGGAAACATCTAGGTTCTTTGAAAGAGTGAAGTAAATGAAACCAAGATGGTTAAAGGTGAAATTCATTACATATCCTGCAGATGATCAGTCATTTCTCCTTTTTTGACACTAATTTTGTATCCCTTGGTTTTTTATTACATATTTTTAAAGAATATGACTGGATCTGGAAAGATTTATAGAGTATTTATGATCTCAAACTGTAGTctacctactgactaggagatgGAGTCATACGCAGCTGCAGAATTTGCTGTATAATtacaaacattttattttatggcAACGTAAAATGTTTAATTACCAGCCTATAATCAATCCTTCACTAACATACATTACTGCTACAGTTGTGCTATTATTGTAGCACATTAGCTATGGCAGAGTGTAAAAATGGATTGCTTTACTTCAGATTAGATTGACGTTATTGTGTACATCTTCAAAATGGAGACTACACGTATGGTGGTGACCAGAGGGTGGCAATGTAACTTAACAAATCACTCTTgaaactccctcctctctccccgtctctcaattcaatttcaatataaggtctttattggcatggaaaacatatggttccattgccaaagcaagtgaaatagataaaagtgaagaaaaaatatatataaaaaaaatgaacaGTTAATATTAGACTCACAAAAGTTCAGATGTCATATTATccctatatacagtgttgcaacgatacaaatagttaaagtacaaaagggaaaataaataaatcatatttaCACTGGTGATTTTTCTTCACTGGTTCCCTCCCTGAAAAATATGCTGTTCTCCTTTCTGTAGCTTGATTTTCCAGTGAAACCTGTTTAACAGTGTGGCTTCTATCCCATATCAGCTTGTTATAGGAAAGTGGTTGCAATCATCACTGTAGAAAATTATGAACAATTTAAACGTGAACTGTATGTCTGGCTCAGTCTTTGATATCCTTAAAGTAATTTTTCCTATCTGCTGATAAGTTAAGATAGGGCAATTCCACTCTAGATTGTTCTGGTAGTTCTCACATAAGAACTTCATTGGGAGGAAGGATATTTACAGAGGAATTgccattttaggccctttttagacctATTCACGCCTCCTGCAAGACCCTGTGATCTGTGAactgtacatgatacagacacatcttggtgtcattatactccaTATAGTTTTCCCTCAAATATGGAGTACTgtatgtctagattctgaaatacgataaaggctctatataatacttgatgctttcttgaatttgtattggatttggggactgtgaaaagaccccagGTGGCAAGTCTGGTGGGGTACAGTTAAATTctgacatttacatacacttcggttggagtcattaaaacttgtttttcaaccactccacacatttcttgttaaactatagttttggcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308857 lncRNA downstream 22319 52675119 ~ 52682633 (-) True G271968
TU308848 lncRNA downstream 31837 52672693 ~ 52673115 (-) True G271959
TU308818 lncRNA downstream 50845 52653877 ~ 52654107 (-) True G271930
TU308799 lncRNA downstream 65139 52639494 ~ 52639813 (-) True G271911
TU308789 lncRNA downstream 69574 52635150 ~ 52635378 (-) True G271901
TU309323 lncRNA upstream 61586 52770332 ~ 52770543 (-) True G272408
TU309327 lncRNA upstream 64340 52773086 ~ 52773290 (-) True G272412
TU309299 lncRNA upstream 66847 52775593 ~ 52776534 (-) True G272384
TU309332 lncRNA upstream 80255 52789001 ~ 52789228 (-) True G272417
TU309360 lncRNA upstream 169012 52877758 ~ 52878101 (-) True G272445
XM_021597319.2 mRNA downstream 12774 52686923 ~ 52692178 (-) True LOC110520181
XM_021597305.2 mRNA downstream 629276 51956334 ~ 52075676 (-) False LOC110520175
XM_021597306.2 mRNA downstream 629276 51956334 ~ 52075676 (-) True LOC110520175
XM_036974560.1 mRNA downstream 862104 51817564 ~ 51842848 (-) False LOC110520176
NM_001124252.1 mRNA downstream 970653 51688835 ~ 51734299 (-) True LOC100135875
XM_036974564.1 mRNA upstream 72035 52780781 ~ 52826345 (-) False gtdc1
XM_036974565.1 mRNA upstream 72035 52780781 ~ 52826346 (-) False gtdc1
XM_036974566.1 mRNA upstream 72035 52780781 ~ 52826347 (-) False gtdc1
XM_036974569.1 mRNA upstream 72035 52780781 ~ 52826348 (-) False gtdc1
XM_036974567.1 mRNA upstream 72035 52780781 ~ 52826389 (-) True gtdc1
TU307459 other downstream 1104722 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 1105054 51597399 ~ 51599898 (-) False il1rl1
TU307414 other downstream 1230813 51473324 ~ 51474139 (-) True fgf9
TU306786 other downstream 1575642 51128440 ~ 51129310 (-) True LOC110520160
TU306341 other downstream 2262080 50440205 ~ 50442872 (-) True LOC110520139
TU309646 other upstream 541180 53249926 ~ 53251084 (-) True G272713
TU311493 other upstream 1971172 54679918 ~ 54682805 (-) True G274344
TU312299 other upstream 2394748 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 2701397 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 2701397 55410143 ~ 55411487 (-) True G275250

Expression Profile