RNA id: XM_036974567.1


Basic Information

Item Value
RNA id XM_036974567.1
length 1554
RNA type mRNA
GC content 0.53
exon number 9
gene id gtdc1
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 52780781 ~ 52826389 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgtggtaaataGTGTACATCGGGTGAGAGGCGTTCCTAAAATGACGGTATCACGCATGGACGAAATATGTGCGTCCTTTTTTCTAGCAAGCATATTCAGGAAGAGGGTCCTGTTTGCCAGTTCTGTGCTGAACCTGTCTGAACTGGTGGCCCTGCGTCCTGACCTGGCCACACTGAAGAAGGTGCTCTACTTCCACGAGAACCAGCTGGTCTATCCAGTCCGCAAGAGCCAGGACAGAGACTTCCAGTACGGATACAACCAGGTTCTCTCATGCTTGGTGGCAGATGTGGTGGCGTTCAACTCTTCTTTCAACATGGAGTCTTTCCTGTCCTCCATTTCGTCCTTCATGAAGATGATCCCCGACCACAGGCCCAAAGACCTGGACAAGCTCATACGCCCAAAGTGTCGGGTCCTCCACTTCCCCATCCAATTCCCCCATGTCACAAGcagacCTGAAGTACTACTCAGTCCAGTAGAAGAGGAAAAGGAGGGACTTCTCAGTCTCAGCTCCCCTCCGGCTGCCATCCTGGATCAGAGGGAAGGCACCGGGCAGGCCGAGGCTCCTTCTCACCCCAGGGAAGAGCGAGGGCCtgggggagggaaggaagagggggatggaggaggagaagagagccaCGTCAGACCTCTTCATATCGTCTGGCCTCATAGGTGGGAACACGACAAAGACCCCGAGCTCTTCTTCAAGATGCTGCTGAAGCTGAAAGAGAGAGGCCTGGGCTTTcaactgtctgtcctgggggagACCTTCACTGacgtaccagACATCTTTGCAGAAGCCAGAGTGGACCTGAATGCCCATGTCCTCCACTGGGGGTTCATGCCCAGTAAAGAGGACTACCTCCATGTCCTCTGCCAGGCAGATGTGGTGGTCTCCACAGCCAAGCATGAGTTTTTTGGAGTGGCCATGCTAGAAGCTGTTCATTGTGGCTGCTATCCACTTTGCCCCAAGGCTTTGGTGTATCCTGAAATATTCCCAGAGGAGTATCTGTACTCTACACCTGAGCAGCTTTATAAGAAATTACAGGGACTGTGCAGAAGGCCATACGTGGTGAGGAGACATCACGTTAAGgtTGACACCAGTTCCTATTCCTGGGCTGCGCTGAAGGAGGACTTCAGGAGTCTGCTGGCATACAAAGAGGACCACCATCCCTGACGGACAGACTACAACTGGGCCAATGCGAGTCCGAGGATCTGCTCAGAAGTGGGCACACTTAGTTCACTCGATTAGTGGCAGAATGAGATGGATTTAAAGGTTGATGGAAAGTCTGCAGCgtagcgagggagggagagtctCAAGGGCTGTCGTCATAGCTGCCTGACATGGAGCCACGGGCAACAAACCTGTGGTGGCCTCAGACAGCCTgtccccaccacctctctctctccactcagctCCACTCTGCTCAAATCAAAGCCATGCCTTTGAGACATTGTGCCTGTTGTAAACGTCCCCATCTTCACGTGCGAGAGGGAGAGGTCTTTTATGTCTACTGTGGTTTGAATTTGAAATAAAGAGAAAAGAACGTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309299 lncRNA downstream 4247 52775593 ~ 52776534 (-) True G272384
TU309327 lncRNA downstream 7491 52773086 ~ 52773290 (-) True G272412
TU309323 lncRNA downstream 10238 52770332 ~ 52770543 (-) True G272408
TU309283 lncRNA downstream 73359 52693956 ~ 52707422 (-) False LOC110520182
TU308857 lncRNA downstream 98148 52675119 ~ 52682633 (-) True G271968
TU309360 lncRNA upstream 51369 52877758 ~ 52878101 (-) True G272445
TU309361 lncRNA upstream 51897 52878286 ~ 52878572 (-) True G272446
TU309376 lncRNA upstream 69008 52895397 ~ 52896059 (-) True G272461
TU309378 lncRNA upstream 71543 52897932 ~ 52898246 (-) True G272463
TU309379 lncRNA upstream 71993 52898382 ~ 52898611 (-) True G272464
XM_036964942.1 mRNA downstream 72035 52704952 ~ 52708746 (-) False LOC110520182
XM_021597319.2 mRNA downstream 88603 52686923 ~ 52692178 (-) True LOC110520181
XM_021597305.2 mRNA downstream 705105 51956334 ~ 52075676 (-) False LOC110520175
XM_021597306.2 mRNA downstream 705105 51956334 ~ 52075676 (-) True LOC110520175
XM_036974560.1 mRNA downstream 937933 51817564 ~ 51842848 (-) False LOC110520176
XM_021597323.2 mRNA upstream 1394 52827783 ~ 52844414 (-) False zeb2a
XM_021597321.2 mRNA upstream 1394 52827783 ~ 52874920 (-) False zeb2a
XM_021597320.2 mRNA upstream 1394 52827783 ~ 52875769 (-) False zeb2a
XM_021597322.2 mRNA upstream 1394 52827783 ~ 52875770 (-) False zeb2a
XM_036974563.1 mRNA upstream 1394 52827783 ~ 52875770 (-) True zeb2a
TU309282 other downstream 71965 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 1180551 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 1180883 51597399 ~ 51599898 (-) False il1rl1
TU307414 other downstream 1306642 51473324 ~ 51474139 (-) True fgf9
TU306786 other downstream 1651471 51128440 ~ 51129310 (-) True LOC110520160
TU309646 other upstream 423537 53249926 ~ 53251084 (-) True G272713
TU311493 other upstream 1853529 54679918 ~ 54682805 (-) True G274344
TU312299 other upstream 2277105 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 2583754 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 2583754 55410143 ~ 55411487 (-) True G275250

Expression Profile