RNA id: TU308945


Basic Information

Item Value
RNA id TU308945
length 3589
RNA type TUCP
GC content 0.41
exon number 5
gene id acvr2aa
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53124656 ~ 53172428 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTCTGTGAGCCACAGGGACATCAAGAGTAAGAATATCCTTCTGAAGTCCAACCTGACGGCCTGCATCGCTGACTTTGGCCTGGCCCAGAGGTTTGAGGCTGGGAAATCAGCTGGGGACACGCACGGACAGGTGGGCACTCGGAGGTACATGGCCCCTGAGGTCCTGGAGGGGGCGATCAACTTCCAGCGGGACTCATTCCTGAGGATAGACATGTATGCTCTGGGACTGGTGCTGTGGGAGCTGGCCGCACGCTGCAAGGCTGCCGACGGCCCAGTGGATGAGTACATGCTGCCGTTTGAGGAGGAGATCGGCCAGCACCCATCCCTGGAGGACATGCAGGAGGTAGTGGTCCACAAAAAGCTGAGGCCCACGCTCAGGGAGTGCTGGCAGAAACACGCGGGTCTGACCATGCTGTGTGAGACAATCGAGGAATGCTGGGACCACGAGGCGGAGGCGCGCCTGTCGGCGGGGTGCGTAGAGGAGCGAGTGGTGCAGATGCAGCGCCTCAACAACGTCACTGCGCCCGAGGAGATTGTCACAGTTGTCACCATGGTTACCAACGTGGACTACCCCCCTAAAGAGTCCAGCCTATGACTAGGCGTATGAGTTAACACAGGACAGGAgaacagaccccacagagacTCACCTCCCTGAGCAGAGGGTCAAAACTCGTTCCACATCCGTCGCTGTGATTGTACACAAGGTGGCGGCAAAAATCACTCAGTGGACCTAGGTTCATGGAGAACTATCCAGGTCTGAATTGGTTCCTATTGCTTTTAGCTACAAGTGTGCCTAAAGACTTCCTCACGCCTGGGTCATTTTAAAATGGGAGGGGGTGATGGGAAAACAAACTCATCTAGATCCCACACTGGACGCACCTTGACAATGGACAAAGTCATTTTAAAGTTGACCTTTTGGCTGATATTACAATTTTTTTGTAAAAGAAAGGAAAACATACTTCCTGGACTGACTTCAGTTTTTTCTCTAAGAAaaggaggaacaggagagaagaagaatcCCGACACAAACACAGTTAATTTAATTTCAGTATAAAAAAGGGCAACTTGGTTTTTAAACACATTTGCTCTTATTGTTTCTATGAATGACTATTGTAATGCCAATAAGAAACAGCTTCTGAATGTCTGTGTATCGCTGCTGTACATatatcaacagagagagaaaatagcgTAATCAAGGTTATTTATCCGGACCTGCCTCACAGCATTTCTATAAAAATAACCATCAACCTCTTGAGTCTCTTAACAAGCTTTTTCAAATGATGGAGTATGCCAACAAAAATGGCCATTCACAAATCAGTGTTTTTTGCCTTGTTAAGTCCTTAGTTTGTGTATTTTATATGTTGCCCCAGCTATTCAAATGTGACTGTAAGCGTTGTTGTTTTACCAACATTTTTAGACCGTTTAAACATGTTGAGAAGAAAATCCCTGAAAATATGAATACATTagagaaaaaatatttaaaaagcaTTTCCCTTATTAGATTTGCAGTGTCCACAAAATATTTAAAACgcatgtttcccccccccccccttttcttcTATGTAAAAGTGTGTGACACTGGTGTCAGGTGTTCGAAACCCTCTATTGATTTTAAAATGAAATGTCTACAAACCGCTGTAACGGTATTGCTCTTTCTCCCTGCCCTGGTTGTAGTATTTTCTGTTTGTAGTCTGCTATTTCCATCATATTTCAATACGTCTCAGGAAGCACACATTACTCTATGACCCCGTCCTCTCTGCTTTTAGGCGCTGACTGATTCTCGTGCCATTATTTTGGAGACATCTTAGTCAAGGGGTACCTACATGAGGTCTTTACAGCTGGTGTGGTTTTCAGGTAGATGTCCATATAGAGGGGTTATTCAGATCATGTCAGGTGTTCTACATTACTAAAGTAGCCATCATGATCAAATCTATATGTGTTCCCCTTCAATCTTGTATTCCCCATCACTAACAGCATGTCCACCACTTTGGCTATGTGCTCCTTAGACAAGACataaaaatattaaaatggcCAATTGCAGCTTTCAGATTCTAACCCGGAATATGTCATGTTAGTAGTCCTATTGTACTCAAAACATTGGTGACTCAATTATATGCTTCTCTCCATCAGACATATTTTGTTATAGCCTACCACATAACATTCAGGGATATAGTAACACTACGCTTTTACTCAGTTAACTGTATGCAATCAAAGTTGGGGCTGACAGTGGCTTCTTGCCATGGCACCAACTTTCAATCTCTATGTAGCGTTTGTTTTTAATAATCAATGAAATCAGCTGTTTTTTGTTTATTCTCTGACTATAAACCCGCACATCCTCTCTGGCAATAACTGTATGCCATCTCAATAGTACAATGATATGTAAGTTATGGATTTAAAGTGGTCATTGCATCTGTAGGACTAAGCCTGTAGCTCGGAGGGTTTATTATTCTCTCACTCACTGACATCTATGCTACTCTTGCTATTCCTCTCTAACCTGAGCCACTGATTCAGGAGTGTAGATATGGGGAGCCAACAACAGAGCAATCTTCAAAAGCAGGGGAGACAGATTTGCAACTGCTGCCATTTTGGTATATACTTACTGTATTATCTGTAGCACTGATGCCAAGGAGGAAAGTCAAATCCAATCTTTATGTTTCCTTATTTtccattcttaaaaaaaaaaacactgctgCTGTGCAAATGCTCCATCTCACTAAACAGATGCTCTCCCTCTGGCCTCAGATGGTTTCTATGTTTATTTTatgtaaaaaatttaaaaaatagtaCATTACTTGTTTCTATGACACCATTATGTTTCTATGGAGGCACATTACATTTAGCCTACATTATACCCCCTTAAAAGCCAAACCCCTCTGACATTAGTAGATGACTGGATGGAAAATgcacagtatgtacatatgaatgTTGTTTTAGATTGTGATTTTAGCATGATGTTGTTTTATATGGTCTCAAggcaaaaaatgaataaaaaatccTTTCTATTGTTAATAATATTCAcccaaaatatttttgttgtttattttatatgtaattgtattttacaatggttttattaatttatgtcAAGGCCCAGACAATGCTAACTTCTCTTTCAGAAGAAGTATTGTTATTATATATCTTTATGCTAGTAAAGACTCCCTGGATTGGCTCATAATTTACCTCAGACAGACATCCTAGCTGTCACTCAACGTTCCCACAACATTGATCAGTGTTGAAGGCGAGTTGTATGGTGCAACCATAGACTTGTATAATTAACAATGTTGTGGGAATATGACCTGAGATTTGATCAGCTATGGtgtttttattttctatgttaCGGTGACATTACTTTGTCATCACACAATAGAAATTGTGTCACTGTTAACTGAGGTTTGTGTTATCTACCGATATTCTCACCATAAGCATAAATGGCCATCTTACAATCAAAATAAACATGTCATCTTTTCCTTTGTTTTGCAAGTATTTAACAAACAGTTTCAGGGCTTGGTTGGAAGTGATTGTTAAATATTGTACAGAATAAATTGTATGCTATTTCTCCCACTAAAATAAAGTATAGTGACTGCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309159 lncRNA upstream 47457 53119173 ~ 53119495 (+) True G272258
TU309158 lncRNA upstream 48587 53117965 ~ 53118365 (+) True G272257
TU309157 lncRNA upstream 49490 53117228 ~ 53117462 (+) True G272256
TU309084 lncRNA upstream 150676 53015850 ~ 53016276 (+) True G272185
TU309056 lncRNA upstream 187807 52978940 ~ 52979145 (+) True G272158
TU309184 lncRNA downstream 408 53172836 ~ 53173171 (+) True G272283
TU309196 lncRNA downstream 13136 53185564 ~ 53185777 (+) True G272290
TU309216 lncRNA downstream 44285 53216713 ~ 53217028 (+) True G272308
TU309243 lncRNA downstream 164727 53337155 ~ 53337586 (+) True LOC110520190
TU309736 lncRNA downstream 175257 53347685 ~ 53367731 (+) False LOC110520191
XR_005049194.1 mRNA upstream 224179 52874928 ~ 52942773 (+) False LOC110520185
XM_021597316.2 mRNA upstream 406576 52708371 ~ 52760376 (+) False LOC110520180
XM_021597315.2 mRNA upstream 406576 52708399 ~ 52760376 (+) False LOC110520180
XM_021597318.2 mRNA upstream 406576 52710074 ~ 52760376 (+) False LOC110520180
XM_021597314.2 mRNA upstream 406576 52715368 ~ 52760376 (+) True LOC110520180
XM_021597330.2 mRNA downstream 1836 53174264 ~ 53233255 (+) False LOC110520187
XM_021597331.2 mRNA downstream 1836 53174264 ~ 53233255 (+) False LOC110520187
XM_036974572.1 mRNA downstream 1836 53174264 ~ 53233255 (+) False LOC110520187
XM_021597332.2 mRNA downstream 1836 53174264 ~ 53235027 (+) False LOC110520187
XM_021597333.2 mRNA downstream 1836 53174264 ~ 53235027 (+) False LOC110520187
TU307177 other upstream 1588269 51573980 ~ 51578683 (+) False LOC110520169
TU305958 other upstream 2266675 50898589 ~ 50900277 (+) True G269291
TU305730 other upstream 2562136 50602302 ~ 50604816 (+) True LOC110520146
TU305367 other upstream 2983926 50162301 ~ 50183026 (+) True hoxd3a
TU303972 other upstream 3311450 49836617 ~ 49855502 (+) True G267529
TU309190 other downstream 48999 53221427 ~ 53223265 (+) True LOC110520187
TU309244 other downstream 118902 53291330 ~ 53336526 (+) False LOC110520190
TU309921 other downstream 476397 53648825 ~ 53652431 (+) False G272965
TU309923 other downstream 476397 53648825 ~ 53652152 (+) True G272965
TU309978 other downstream 485033 53657461 ~ 53658683 (+) True G273004

Expression Profile