RNA id: XM_021597330.2


Basic Information

Item Value
RNA id XM_021597330.2
length 6111
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110520187
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53174264 ~ 53235027 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCAACAAGCTCGATAGAAATCGAGCAGTGGCACTTGTACGTGGGAGCGCATTAATCTTGATTTTCAAAGGAATAGCTACCCTGAACCTAGACTTATTTCAACATTTCTCAACACATAATCCTTAAAAGCTAAATGTGGACTATTTAAATGCAAGGCATGGTATTTGGGATATGCTAAAACCTTATTTCTGACTCCTGCCTCAGCAACAGACCTCTCTCTGCCTGGTCTCTGGCTGTCTCAATTTTGGCCCTGGCTCGACTCGACTGACATTTCTGCAAAGGGCTTCGGTTCATGGTGTTATTTTTACTAAATTCTCGGGTTCCTGGGTGTCGTTTTTGTCATCTGAAAAAGGTAACTAAGGTTGGAATATATGGGACAGTGTCTGCTCTTATCCGTTATCAACTCTGGGATGATGTCATGCTGACGGATCCTGCAACTATGAGTTCTAAGGTCGCAGCAGCTGCAGTTAGTGTCAGCCAGAACTCACGTCATCATATCATGACCAGATCCATCCAGATTTGTCCAATAGCAGATTCTGTGAACTGAAAGTGAAACGTCTCCATTGGTCTGTGAGAGAGGTAGCTTGGGCAACTCTACTTCAAgttccctcagaccactcatCCCAATGTCCCCAGGACCCCCCACGACTACCATGGCCTCCTCACAAAGACTGATGAAAATGGGGTTTTAAACATGTCGGCAATAAACAGGATGGGGACGAAGGGCCTCAAAAGTCTGGTTCCACAGTGAACCTGTCCACGGAAGAGGCAGGCGACGGTGGGATTGGCAGTTAGCAGTTCCGGCAGCGAAGCTGTTGTAGCTCATCCTCTCTTGGTTGGTCAGTTTACTCCTGAGAGACCCCAGGATGACGCACACTAGTCTGAGCGCTCTGACAGacttgtgatatctcacatcgcAAGGGTGTAGTTGTGAGGACCTAAGGAGTGGACAATGAACAGAACCAAGAAGGAGGGGCTGTGTGCTGAGGGGAAGCAGCCCCCGGCTGAAGTCCCTATAGGTTGGCAGCGCAGAATCACCCACAGCGGGGTTGTCTACATAAGTCCCAGTGGCTTAGTCCTAGCCTGTCTGGAGCAGGTGAAGAGCTACCTGCTGACTGATGGCACCTGTAAGTGTGGCCTGGAGTGTCCTCTCATCATTCATAAGATATTCAACTTTGACACCGGGGCGGCTGTCAAGCAGAGGACTGTTGAGGATGCCAGAGCCGATGCTAATGTCACCAAGCTGTGTATCCACAAGAGGAAGGTCATCACCGTGGCAACCCTGCGCAGGAGCATGGAGTCACCACACCCTGCTCTGGCCAGTGTTGGCACTGGCGCTGCAGCTATGGGTCCTTTGAGTCATCAAGCAATAAGGAACAATATGCACAATGGTCCACCCAACTCTGTGGCTCTTGATGGCAGGAATCCcaacaagacaggaatgtcagtttctggtcaacagtactatAACCATGAACTGGATTCTCCCCCTCAGAGGGATCTGTACTTGGGGTACAGCAGGACAAGGCTGGGGGGCAGCGAACACAGTAGCCAACAACGGTCACCCTATCACAGCCGCCACAGTGTCCTGCTCAGCCCCTCCTCCTCCAATTCATGTTGCTCACAGCATTATGGTGATAGGGCTCCCTCCCCAAGGACTGAACCTCTGGGGAGTCCTGACCCCAATATGCTTGGTTTTCATGGAGCTTGCAGCCCAGGCTCTGTCCATATGAACGGTGATCGTTTTACCCATCTCTCACCACCCAGTATCCTGCACCACGGCTCGCCTTCGGCCTCCCAGCCCTCGTGTGCCATGTCAGGAAGGACTAATGTACCAAATTCCCCTGCCGTCAATGCCAAAAGCCTCAATTTGCAGCCCTCCTGCAGCTTCCCCCACGACTTTCAACACAAGCCCCAGCCTGCATGCCACCCACAGTCGCACTTTTCCCTGTCTCAGCTCCCTCCCTGCATCCTGCAGAAAAAGCAGGTGACCTCTGAGAAGGACCCTCTTGGTATCCTGGACCCAATTCCAAGCAAGGCTCCTAGCCAGGGTCCCTTAGTGCCAAACATATCTGGCCTCCAACACAATGCCCAATCTCAGGTACCACCAATGAATGTAAACATCCCCCCTGCCAGTGTCCCTTTGCCCAGCAACCTGCCCTTGCCAACTGGGAAGTCTGGACCTGTTGGGCATGGCCATAGGGTCCAGCACCACCCTACCCTGTCATCCGCCTCATCCTCACCTATCATGTCCCCAGCACATATGGCTGGGCCTGTCCTCGCCAAGGTGGAGTCACCCCACCGCTCACGTTGCTTATCCAGTTCTTCTGAACATGGTAGCTTCGCTCACCCCACAAGGGGGCTCCAGGTTCCTTGTGGGGGTTCAAAGCCACTTCCCCGGTCCTCTCAGGCCTCCTCGGGGTCCCCTCGACCTGCAATGCCACAAGGTTCTGCATATAAGATGGACAAACTCCATCACTTGAACGATACCCCCAACCAACTGCCAGGGGGGATGAACATTGGTCTAAGCAGGCATCCCAACTCCATGTACCGTCCAGCTCCCGGATCTGATAGTATCATTCAAAAGAATCACTCGGTAGGAATGCCCCTTAACCAGATGTTAGATCAGCAGAATCCTGCTTCCTTCCCAGCAAGTAGTCTACTTTCAGCAGCAGCGAAAGCACAGCTAGTTAATCAAAACAAACATACCGACAGCACATTGGGTGCAGGCGCAGAGGCTCGCAGTGGCAGCAGTTTGGGACACCCAGGGCTAGTTGGTGGAGGAAGAGGTGGGAACCTAGATGGACACAGCACTTTAAACCAGAGATATCTACCTAATCCTGGGCCGTTGGCGAGCGAATTTCAAAGCGGAAGAGCAGCACTAAGAGACAAACTCATGGGTATGGTTCAGCAAAGAGAGGCAAATCGCAAGCGCAAACTGTCCAGTGATGGCAGCAGTGGTGGCATCAACAATGACAGGGCTTTCGACGTGCTCAAGCATCCGATGGGTGGCTCTGGATCTAGTTCATCTAGCTTTCCAGAGACTTTGAGGAGAATGTTGCAGCAGGGTTGTTTGCCCCCAAACACCTCCATGGCCCAGCTACTCCAGTCCATGAGCCACCAAAGTGCCCACAATGAGCCAAGCCACGTGGGCCAAAGCCCGGCCAAATCTGGCAAATCTCCCTTCTTGGAGGAAGCTTTGCCTCAGATGTCGACTTTGCAGCAGAGCTTGCAGGGGCATCAAATCCAGGGCAGAGCGAAGATCCGTGGCTTCCAGAACATGAACAGTGATGGTCAGATTTCAGGCCAGGATCTAAACATGGAGCAGTTCAACAGGCCAATAAATCAAATGCAGGACCCCACCTTAACTGGAAACTTTGGGGTGTTGGGTTACAATGGTGGACAACATGCAGCCATGGTGTCGATGCAGGGAAACCCAAACCCTCACCAGCAGCAGCAGTTTGGACTTTATCAGAAACCATCCCAGGCGCAAGGCAACCCCCACTTCAGAGGCAGGGCAGGATTGCCTCCCATGATGTCCAATGGCGGGGTCCAAGCCCTCTCTGAGTCAGGTGAGGTCAGTAGTTCTCTGAGCTGTGAGCTGAGGCAGGCCCGAGAGGAGAGTCTTCAATCTCTCATCAGGAACAGCCAGGCCCATACACTGCAACAACAGAGACTGCAACCACTTGTTCAGGGCCAACATCAGGGTCTGACCCAGGGTCCTGGTCAGCACTACATGCAGGGCCAGCAGCAGCATAGATTCCAGTGCCAAGGCTCCCACCCTGATGCCCCTCTCCCTGATGATGCCTCCTCCAACCCCATGAACAGCCTCCTTCAGAGCTTCCAGGTGGATTTGCCTGAGACGATTCCACTGCCAAACAGAACTATGATGAGTCGACCGGGGATGATGTCCATGTCCCAACCCGGTGCCCCTTGTCACCAGAACAGTCATCAAGAATACCAGGCTGCCGAGGACCTTCCAGGTGGTGGGGGAGAAGTTATTGATACCATCCACAGGGCAGCGATGGGCACGGCCAGCAAGAGCGCGTTTAATGTCATCACATCAACTGGTGCTAGCGGTACCTTCGCTTCTTCTGTTGTCGGCGAGCCTGTCGACCTCTCCCATGCGGTTAACTCTGTCATTCATGGCCCCCTTCGCTCATATCAGGAGCCAGTGCTAGAGCCCCGACACCAACCCAAGGTGGGTCGGCCACGCAAGAAGACCCCTGAAAGGAACAACAGCTTCTCTCCTGTTGCTATGGAAGCTCCTGCCAGATTCCGCTCGCCGCGACACGGAGCCCAGAGAAGACAATGGGATGGGCAGGCGGAGGGCCAGGAGCAGGCTGGTCTGTGGCGTAATGACGAGCTCCTCCAACTGCTTTCCTTAGCCCAGAGCAGAAACGGCACCTACCCAGAGAGGCCCAAAAGTCAGGCCCAGGTCCACTTTGGCCCTCAGGACCAAACAACACTGCACTTCCCCAGTGACTTGTATGCCCATATGAACGGCAACGGTAGGGTCCTCACCTCGGGAAGACTACATTCCAGACACCCCAGCCTGTCCCCTGGTTCTTCCTCTGTCCCACCAGAGGGCCTTTTTACCAAGGATTACAGCCACTACAACGAACATCTGAACGGCCAACTCAATGGGAACCACTATAATGGGCATTACAATGGGCACCTGAATGGGAGCCTGAGCGGCGAGGAAGACCTGAGGCCTGGGGACTCTCCCTCCTCCAGTGAGGGGCTCCCGCTCCACCACAGGCCCAGAACTCCGGCCCACTACCCGGGGGATCTACTCTGGGGCCAGGGCAAAGGCTTCCCTCCATGGCCAGGCAAGATTGGGAGCGAGGGGCACATGTACTCCCCTGGGATGGTGAATGACATGCAGGGAAAGGTAGAGTCAGAGAAGTTCCAGAGGACACTAACAGAGGATCTGGACACACTACATAAAGCAAACAAGATAACTAGAAATGGTCGAAAATGGAATAACCACCTAGAGGCTGCTATACAGGAGGCTATGTGTGAGCTGGATAAGATGACAGGCAATatatcacagagagacagacaagtcAAGACCACTAAACCCAAGAGGAGGAAGATCTCCAGATGACAGTAAATGTGTGGACCCTTTGGTGTCCTGCTGGGTAGCGGTCCATCTAGCCAATGGGTCGTGTGTAGCCGATGTAGAATCGCTAGCCAGTGTGTGCAATAGTAGTGACCGTTGTCTTCTCTTTTGCATCAGCTTGGTACTTAGTCCAACTGGATTAGTGCTACAATCAGAGTCAACCCTCCCACCTTGACCACCACCAAGACACTGACAGTGAAGAAAGTACAAGAAAGGATGGAGGAACCTAGCTGCAAAATAATAGCTGTGATATATCCACAGCTAGCTTGTCCTTATGGAAAATGAGATTCTACATATAAGGAAATAGTTGGTCCAAATATTTCTGATGCATTTTAGATTATGCACATAGACAAAGGAAAACAGTACATTATTTTCAGTGGTTAATTGTATATATTGTTCAGTTTTATCATTGATGAGTTGACTTAATGCTAATGTCTTATGTACATATCAATACAAAACTATATCTGGTTCtccaatgtttttatttttcacaAAACGGTGAGGCCAGAGATTTCATTTTTCAAAAGAAAAGCAGCATAAAGGAATTTCTATTACAGATCTATTGAAACATGCTGTTAAGCATTGAACAGCTGAAGGATTATAATGTTGAACTTCAACAGACACTATTCTCATTTGCATGCAGCCAGTAAGAATGATCTTGTCCTGCTAGGAAGGCATACATACAGTGTGTGTCCCAAGAAAAGGAAATTGGAAGACTTGAAGATAGACCCACAGTATATCCTTTATCTGAACATAGGACATGCAAATACTTTCTCTTTGTCTTACGTTTCCTTTTTCTTTGTTCTTGTTTTTATCCATGTTATCCAAGAAAAGAAAAAGCCATCAAGGGAAGGAGTCTGAAATATGCCTCTAAGTTACATTATTTGTACTCCCAAAGTAAAATTTATTTTCTCTGAATATTTTTGATAAACAGATTTCCTGTGTTATATCTGCAAAATGACTTTGACAGTATATgtttgttcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309184 lncRNA upstream 1093 53172836 ~ 53173171 (+) True G272283
TU309159 lncRNA upstream 54769 53119173 ~ 53119495 (+) True G272258
TU309158 lncRNA upstream 55899 53117965 ~ 53118365 (+) True G272257
TU309157 lncRNA upstream 56802 53117228 ~ 53117462 (+) True G272256
TU309084 lncRNA upstream 157988 53015850 ~ 53016276 (+) True G272185
TU309243 lncRNA downstream 103900 53337155 ~ 53337586 (+) True LOC110520190
TU309736 lncRNA downstream 114430 53347685 ~ 53367731 (+) False LOC110520191
TU309755 lncRNA downstream 136914 53370169 ~ 53370382 (+) False LOC110520191
TU309735 lncRNA downstream 140945 53374200 ~ 53375516 (+) True LOC110520191
TU309780 lncRNA downstream 146155 53379410 ~ 53379650 (+) True G272837
XM_021597328.2 mRNA upstream 1838 53124656 ~ 53172426 (+) False acvr2aa
XM_021597329.2 mRNA upstream 1838 53124656 ~ 53172426 (+) False acvr2aa
XR_005049194.1 mRNA upstream 231491 52874928 ~ 52942773 (+) False LOC110520185
XM_021597316.2 mRNA upstream 413888 52708371 ~ 52760376 (+) False LOC110520180
XM_021597338.2 mRNA downstream 2288 53235543 ~ 53251751 (+) False LOC110520189
XM_021597335.2 mRNA downstream 2288 53235543 ~ 53253493 (+) False LOC110520189
XM_021597336.2 mRNA downstream 2288 53235543 ~ 53253493 (+) False LOC110520189
XM_021597337.2 mRNA downstream 2288 53235543 ~ 53253493 (+) True LOC110520189
XM_036974574.1 mRNA downstream 22161 53255416 ~ 53288980 (+) True kif5c
TU308945 other upstream 1836 53166952 ~ 53172428 (+) True acvr2aa
TU307177 other upstream 1595581 51573980 ~ 51578683 (+) False LOC110520169
TU305958 other upstream 2273987 50898589 ~ 50900277 (+) True G269291
TU305730 other upstream 2569448 50602302 ~ 50604816 (+) True LOC110520146
TU305367 other upstream 2991238 50162301 ~ 50183026 (+) True hoxd3a
TU309244 other downstream 58075 53291330 ~ 53336526 (+) False LOC110520190
TU309921 other downstream 415570 53648825 ~ 53652431 (+) False G272965
TU309923 other downstream 415570 53648825 ~ 53652152 (+) True G272965
TU309978 other downstream 424206 53657461 ~ 53658683 (+) True G273004
TU310076 other downstream 608009 53841264 ~ 53841617 (+) True G273094

Expression Profile