RNA id: XM_036974574.1


Basic Information

Item Value
RNA id XM_036974574.1
length 4292
RNA type mRNA
GC content 0.51
exon number 26
gene id kif5c
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53255416 ~ 53288980 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAACCCACTAGAGGGGAACGTCGAGTTGAGTGATTAGCTTCCATGGAATATTGGCCCATCCATTCCATTTTACACAGAAATATTTGTTCTTATGGTGATGTTTAAAAATGTAACCTACCCGTGTAACACTTATTTACAACACATGCAAAGTAAAATTCTTTACAATCTCTTGTTTTATATCGTTTATCAATATGATTTGAATACTCCTCCCAGAATACCATAGAAGTCGCGTTCGGGCTGCAAGCGTGTTAGGCTACCGCAACATCAACATCCTCACCATCACTGAGGTGGACCAAAGTGGGATTGACAGCATTAGAGCAAGGAGCTTCAAATTGGTCGATGCTGGTCCTGATGCAAGACGCATCGGTGAATACGGGAAGTCTTTAACCAATGTTTGACCACGAAAAGGGGAACTCACATTCAAATCGACGCTATCAAACGATAGCAGCCAGACCATTCGTCAATCTATTGTTTTCCTTTTAAGCAGGTAACGTTAGACTAGGATTCAGCCTAGCGCCAATCGTTTCATTGACAGGGATGTCGATCGAGATTGAATTTCAGCGAATGACAAAGGAAAGAAGTGCTTAATTCCATCTCAGTAAAATTGCAGTAAACTTCGCGATAGTTAGCCTAGAGAAAGTTATTTGGGTTATCTGGTTGGAAATAACCTAGTGCTGTGGACATGGCGGATGCTGCTGAGTGCGGTGTAAAAGTGATGTGCCGATTTAGGCCTTTGAATGAATCGGAAACCAACAGAGGAGACAAATACATCCCGAAATTCAAAGGCGAAGACACGGTGGTAATAACGGGCAAGCCTTATGTGTTTGATCGAGTCCTGCCACCCAACACAGCCCAGGAGCAGGTCTATGATGCCTGTGCCAAgcagatcgtcaaagATGTGTTGGGTGGGTACAATGGAACCATCTTTGCCTATGGCCAGACCTCATCGGGCAAGACTCACACCATGGAGGGCAAGCTCCATGACTCCCAGCTGATGGGTATCATCCCCCGTATCGCCAGGGACATCTTTGACCACATCTACTCCATGGACGAGAACCTGGAGTTCCACATcaagGTCTCCTATTTTGAAATCTACTTAGACAAGATCAGAGACTTATTGGATGTGTCAAAGACCAACCTAGCAGTGCATGAGGACAAAAACAAGGTGCCCTATGTTAAGGGCTGTACGGAGCGCTTTGTGTCCAGTCCAGAAGAGGTTATGGATGTCATCGATGAAGGAAAATCCAATCGTCACGTGGCTGTTACAAACATGAATGAGCACAGTTCTCGCAGTCACAGCATCTTCCTGATCAACATCAAGCAGGAGAATGTAGAGACAGAACTGAAGCTGTCAGGAAAACTCTACTTGGTGGATCTGGCTGGCAGTGAGAAGGTCAGTAAAACTGGGGCAGAGGGATCTGTGTTGGACGAGGCCAAGAATATCAATAAGTCCCTCTCCGCCCTGGGGAACGTCATATCAGCTCTGGCCGAGGGAACTAAAACCCACGTGCCCTACAGAGACAGTAAGATGACCCGTATCCTGCAAGACTCTCTGGGGGGAAACTGTAGGACCACCATCATCATCTGTGCATCCCCCTCTGTCTACAATGAGGCTGAGACCAAGTCCACCCTCATGTTTGGACAGAGAGCTAAGACCATTAAGAACACAGTGTCAGTGAACCAAGAGCTGACAGCTGAGGAGTGGAAGAAGAAGtatgagaaggagaaagagaagactaAAGGCTTGAAATACGTGATCCAGAAGCTTGAGACCGAGCTCAAACGCTGGAGGAAAGGTGAGGCTGTTCCAGTGGAGGAACAGCTGAGCAGTAAGGAGAAGAAGAGCAACAGTTGTGACGCCATGGCCACGCCCATGATTGACACCATCGCCCCACCCCCTATCCCGCTATTGGACGAGGAGAAGACCCGATACGAGGGGCTCATCACCGACTTGTACCAGCAGCTGGATGACAAGGATGATGAGATCAACCAACACAGTCAGCTGGCAGAGAAGTTCAAAGAGCAGATGATCGATCAAGATGAGCTGCTGGTTTCGGCCCGTAAGGACTATGAGAAGCTGCAGGAGGACCTGTCCAGGCTGCAGAGGGAGAACGAGGCGGCCaaagaggaggtgaaggaggtgCTGCAGGCCCTGGAGGAGCTGGCTGTTAACTACGACCACAAGAGCCAGGAAGTGAAGAACAAGAACCGCTCCAACACCCAGCTCAGTGAGGAACTCAACCACAAGAGCACCACTCTGGAGGGGGTGCAGAGGGAGCTGTCCAGTCTACAGGAGCTCAGCAGTCACCATAAGAAGAGAGCAGCAGAGATCCTCAGTCTACTGCTCCGAGACCTCAGTGAGATAGGAGGCATCATCGGCACCAGTGACCTCAAGTCTaTGATGGAGGTGAATGAGGTCATCGAGGAGGAGTTCACCATGGCCCGTCTTTACATCAGCAAGATGAAGTCGGAGGTCAAGTCTCTGGTGAACCGCAGCAAACAGCTGGAGAGCTCCCTTGTCGACACCTCCCGCAAGATGCAGGCCAATGAGAAGGAGCTGGCCTCCTGTCAGTTACTCATCTCCCAGCACCAGGCTAAGATCAAGTCTCTGACAGACTACATGCAGAACATGGAGCAGAAGAAGAGGCAGCTGGAGGAGAGCCAGGACTCCCTGATGGAAGAGCTACACGCACTACATGCACAGGAGAAAATGAAAGAGGTACATGTGATGGATAAGCAGAAGGAGCACCTGACCAAACTGCAGGATGCAGTGGAGATGAAGAAAACCCTAGAGGAGCAGATGGAGAACCACAGAGAGGTGCATCAGAAGCAGCTGTCTCGCCTGCGGGATGAGATCGACCACAAGCAGAGGGTCCTGGACGAGCTCAAGGATCTGAACCAGGGGCTGCAGCTGGAACAGAGCAAGCTGCGGTCAGACAATGACAAACTGAAGGCCGAGGAGCTGGAGAAGGACGAGCAACTGCAGAAGCTTGTCTTCTTGAATGAGAAGAGAGAGCAGGCCAAGGAGGACCTGAAGGGGCTGGAAGAAACTGTGGCCAAGGAGCTTCAGACCCTGCACAACCTGCGCAGGCTTTTCATCCAAGAGCTCACCTCCCGCGTCAGCATGAGTGCAGAGATGGATAATGAGGAGGCTGGGGGCAGTCTGGCTCAGAGACAGAGGATCACCTTCCTGGAGAACAACCTGGAGCAGCTCACCAAGGTCCACAAACAGttGGTGCGTGATAACGCCGACCTGCGCTGTGAGCTGCCCAAGCTGGAGAAACGTCTGCGGGCTACGGCTGAGAGAGTCAAGGCCTTGGAAACAGCCCTGAGGGAGGCCAAAGAGAGTGCCATGAGGGACCGCAAACGCTACCTGCAGGAGGTGGACCGCATCAAAGAGGCCATGCTCTCCAAGAATGCCTCCAGGAGGGGGCACTCTGCACAAATAGctaAGCCCATCCGTGCAGGACATCAGCAGCAGTCCACATCCACTCCCTCAGCGGGTCATTCCATCCGTGGAGGCTCTATCCGCGGGGGTGGAGGGGTGTCCAGCCCTCACCACCACCGCCACCCGGCCTCTCCATCACCCTAccgccagcagcagcagcagcagcagcagcagcagcagcgcaGCAAATAAAGCACAGCTGCAGGTGGAAGCTGGATTTTCCAGCTGGATGTACAGACCAGATCTCCTCTCCCTTTAGGACCGGACCCCACTCCAGGACTGTCTGGGATATTCTCTTCCCCCATGGAccttgctatctctctctctaaccactgggaccaatcctcctctccttctctcaccacTCTGCCTTTACTGGGACTCCAGACTCCTCATTCCTGAAAAAAACACACTCTGGCTCATATCTTTATTAATAGGTCTCCTATCCTCATGGTCAAGAGGAAAGAGAGGCTCCGTAATGTTGAACAAGTGTTTTTCATCTTTCGCCTTCTTgaatctctctcactctgcctctgttTCTGGTGCTCTATCgatatgcctctctctctctctctctctctctctctctctctctctcgctctctcgctctccctctctctctcagactgaaaTGTGTAATGAGCTCCTTCCTATATGTTGTTGAGGGTGATGTCTCTCTGGTGCTTGTTCAGTGTTGTATCTTGTGAAACAGGCTGGTTTTCCTTGAAGATAAATTATGAGAAAAGGGTGGTTTAGAGGGTAACATTGAATATGgttgtttaggggtttccgtctAACACCAATACCCTCAGAAACAATAGAAGGGACACGGATGTTGTTAA

Function

GO:

id name namespace
GO:0007018 microtubule-based movement biological_process
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K10396 KIF5; kinesin family member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309216 lncRNA upstream 38388 53216713 ~ 53217028 (+) True G272308
TU309196 lncRNA upstream 69639 53185564 ~ 53185777 (+) True G272290
TU309184 lncRNA upstream 82245 53172836 ~ 53173171 (+) True G272283
TU309159 lncRNA upstream 135921 53119173 ~ 53119495 (+) True G272258
TU309158 lncRNA upstream 137051 53117965 ~ 53118365 (+) True G272257
TU309243 lncRNA downstream 48175 53337155 ~ 53337586 (+) True LOC110520190
TU309736 lncRNA downstream 58705 53347685 ~ 53367731 (+) False LOC110520191
TU309755 lncRNA downstream 81189 53370169 ~ 53370382 (+) False LOC110520191
TU309735 lncRNA downstream 85220 53374200 ~ 53375516 (+) True LOC110520191
TU309780 lncRNA downstream 90430 53379410 ~ 53379650 (+) True G272837
XM_021597335.2 mRNA upstream 1923 53235543 ~ 53253493 (+) False LOC110520189
XM_021597336.2 mRNA upstream 1923 53235543 ~ 53253493 (+) False LOC110520189
XM_021597337.2 mRNA upstream 1923 53235543 ~ 53253493 (+) True LOC110520189
XM_021597338.2 mRNA upstream 3665 53235543 ~ 53251751 (+) False LOC110520189
XM_021597332.2 mRNA upstream 20389 53174264 ~ 53235027 (+) False LOC110520187
XM_021597339.2 mRNA downstream 2304 53291284 ~ 53339392 (+) False LOC110520190
XM_036974575.1 mRNA downstream 30315 53319295 ~ 53339391 (+) False LOC110520190
XM_021597340.2 mRNA downstream 58676 53347656 ~ 53375674 (+) False LOC110520191
XM_021597341.2 mRNA downstream 81004 53369984 ~ 53375674 (+) False LOC110520191
XM_021597343.2 mRNA downstream 147048 53436028 ~ 53449882 (+) True LOC110520194
TU309190 other upstream 32151 53221427 ~ 53223265 (+) True LOC110520187
TU308945 other upstream 82988 53166952 ~ 53172428 (+) True acvr2aa
TU307177 other upstream 1676733 51573980 ~ 51578683 (+) False LOC110520169
TU305958 other upstream 2355139 50898589 ~ 50900277 (+) True G269291
TU305730 other upstream 2650600 50602302 ~ 50604816 (+) True LOC110520146
TU309244 other downstream 2350 53291330 ~ 53336526 (+) False LOC110520190
TU309921 other downstream 359845 53648825 ~ 53652431 (+) False G272965
TU309923 other downstream 359845 53648825 ~ 53652152 (+) True G272965
TU309978 other downstream 368481 53657461 ~ 53658683 (+) True G273004
TU310076 other downstream 552284 53841264 ~ 53841617 (+) True G273094

Expression Profile