RNA id: XM_021597344.2


Basic Information

Item Value
RNA id XM_021597344.2
length 3269
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110520195
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53537677 ~ 53562438 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACGATCAACAGTAGTTTACAGAGTAGTTTACCGGTGTGTATAGGACGTTGCTGACAATATCAACAGTAGTTTACTGGTGAATGGGGGACGCAGCTAACAATATCACAGGACAGTAGTGATTGTTATGGGGATCTGATTTTGGTGCGGAGCTTATCTATAGACATTTAGAAAAATAAATGAAGGATACAGGATCTGTTCAAAAGCTTTCACCGAAATCCGAGATGGATCCTAACCAGAGCGTGAAGTGTAAAATCGTTGTCGTTGGGGACAGCCAGTGTGGAAAAACTGCTCTACTTCACGTCTTTGCAAAAGATTGCTTTCCAGAGAACTATGTCCCAACAGTGTTTGAGAACTACACAGCCAGTTTTGAAATCGACACGCAAAGAATAGAACTCAGTCTCTGGGACACTTCAGGATCTCCGTACTATGACAATGTGCGACCGCTCTCCTACCCAGACTCTGATGCAGTCCTCATCTGCTTTGATATCAGCAGACCAGACACCCTGGACAGTGTACTGAAGAAGTGGCGAGTAGAGATCCAGGAGTTTTGTCCCAACACCAAGATTCTGCTGGTGGGATGCAAGTCAGACCTCCGCACAGACCTCACCACACTGGTGGAACTGTCCAATCACAGACAGACACCCGTGTCATATGATCAGggctccaacatggcCAAGCAGATCAGTGCTCCCTACATCGAGTGTTCATCCCTGCAGTCTGAGAACAGCGTCAGAGACATCTTCCACGTGGCCACGCTTGCGTGCGTCAACAAGAGCAACAAGAACGTCAAACGCAACAAATCCTCCAGGGGCACCAAGAGGATCTCGCACATGCCCAGTAGGCCCGAACTCACCGCTGTCACAGCAGACCTGCGTAAAGACAAGGCCAAGAGCTGTACAATAATGTGATTGGTTGGGGTAGGGAGACTGACTGTGGACTGTGGGAGGAGCAGGCAGGTGATGGGGACTGGACACTTTGCATAGAGCCCCTCCCACTCGACTCACACGCAAAGGAGTGAGAAGGCGAGTTAGCGCTGCACTTTAAATCAGCTTCTCCACTGGTTTGTATTGACGCAAAATGTACAAACTTACATCAAGCTGCCCTTATTCTGTGCCATAGGAGAAGTTCACCAAGGAGACCTGAAGGAAACCGGACACTGGAGCCCATCTGAGGCTTCAGAATTGGGTTTTGGTTTATTTTTAAGGCCAAGATGGTCAACAACCCTTTGACATAAACTACAAGAAAGAGATGGAAGACATGCTGACTTCTGTCGGTCCTCTCAAGCTTTCTTTACCCCAGGAAATAATGTTTTTGGTCCAGCAATTACATCATAACCTTTTGGTCTGGGATCTGGACAGGAAAAGAGCTAAAGTGGTATCAGGTTTTAATTTTATCTTCAGAAAGATATGAGAAGTGGTATGGTGGTGGATTCACCACTGAGTGACAAGATTGTTGTTTGGAAGCAAGAGACTGCTGCTGTGTTCTGCTACAGTAAAATGGATCAAGAAGACAAATGGATCTCTTGCACTGGCCCCTGGTTCTGGCACTTACAGACAAAGAAGTTACTAAAGGACAGAAACACTGGTTCGTTCACATTGCCCatcttctccccctttctcttttgtTACTGCCTTTATGAGTTTGCCAAATGGGATGTTTGTTATAAGCTGTTGCACACTGTTACGAAAGATCTGAAAGCCTTTTTACtatgttttgctcctttgcataTCGTTCTAGTGCTGTTTTTAAACCTCAGCATAGTCTGAACCCTTTGTTTTGCTGTTTTTATCATTTACAACCAAAAAAGCTTGACAGCGTTGAAATCGCTCACAAAGTAGCTCTCTGGCAACGACTAATGTGATAAGCTGTGTAACGACCATGACCAATGATTTTGAAGGATGTGCTACAGTATCTCTGAGGACATATCCTACACCCCTTCTCTTCTGTCACACTTCTGTCACTGGGATGACTGCTCTCCCTGCTCTTCTCTCCCTGGCATCGCAAGAGTTACGGGCAGCACAGCTGCCCAGTACATGTGGTGCACAGTGCACACCCATGCCAAGTTTAATTAAGGGCTTAAACATGGCCAGTGCTGATCAAACCACTGAGCTTCGGTTATCGGCCCAGAAGACCATCATTGCACAGATCTTTTCAAGGATGTCCTCGGCTATGCAATGTGAGGATTCTTATCGAACTCCAAGAAGGACAATGGTCTGTGAAGACAAGTCTAGTTATCAATGTTTGCTGGTTCATGACCTGTACAGTGCTGTTATTGTTTTGGGGCGGCAgtagttagcctagtggttagagcattggactagtaaccgaaaggttgcaaggtcagctcggggatttgaaaaggtacaaatctgtcgttctgcctctgaacaggcagttaacccactgttcctaggccatcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaataaaaaataaatgtgtgtgtggagCGCTAGGGCAGACTACATATTACTCACACTGTTCATCTCTGGTACAGAGGCACCACATTCGTAGCCTACTCTTGATTCAAATACAACTGTTATTTGATAATGAATGTGACCAGCACACTGGGGCAGTAGGCTAAGTCCAATAGCTAAGTAGAACTAGCCCGTAGCTATAGCTCATGGCGGCAGGTAACCttgcggttaagagcgttgggccagtaaccgaaaggtcgttGGTTCGACTCCCCAAGGTGGGGAAAAATCTGGCCTTCTGGCCTTGAGCAAGACGGTTAACCATCTGCGCCTGGGGAACAGTTGGGgatgtggatgtcgatttaaGGCAGCCGCTCCCCCATACCTCCTCTGAGGGGTttggttaaatgcagaagacgcATGATTGTTGAATGCGTTGGTGGAGAGATACCTCTCAGTTGCACAACAAGCAGTTGCTGTTAAACTAGATTTACATTTCACATCTAACAGTTACAATTTCAGTCTTCAGTTGTCTCCGCAGCATAGTAAGTACTTGGGTGTTGTTGGTGTTGAAGTCTGTTGAGCTGATTTCAGAACAGCCCCAAAAGGCAGTATATCAGCTAGCGGGTGTAGTCTTAGCTCACAGTATGAAAAAATTGTAAATTAAAGTTCAGAATGTGTTAGCTGTAGAATATCAACCCTTTTTTTTATGTTTAGTCCATTTGTATGTATGATGTTTCGACAGTATTTATTGAagttatatattttacctttttgAAAATAAAGTTCAATGTACAGTACAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07859 RND3; Rho family GTPase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310297 lncRNA downstream 140380 53397079 ~ 53397297 (-) True G273298
TU309775 lncRNA downstream 162156 53373540 ~ 53375521 (-) True G272832
TU309717 lncRNA downstream 200007 53336680 ~ 53337670 (-) False G272774
TU309714 lncRNA downstream 200007 53336705 ~ 53337670 (-) True G272774
TU309713 lncRNA downstream 200115 53336705 ~ 53337562 (-) False G272774
TU310456 lncRNA upstream 29001 53591439 ~ 53591680 (-) True G273454
TU310466 lncRNA upstream 39640 53602078 ~ 53602367 (-) True G273464
TU310512 lncRNA upstream 83495 53645933 ~ 53651951 (-) True G273493
TU310545 lncRNA upstream 203922 53766360 ~ 53766580 (-) True G273523
TU310614 lncRNA upstream 306271 53868709 ~ 53869460 (-) True G273584
XM_021597342.2 mRNA downstream 143359 53384541 ~ 53394318 (-) True LOC110520193
XM_021597322.2 mRNA downstream 661907 52827783 ~ 52875770 (-) False zeb2a
XM_036974563.1 mRNA downstream 661907 52827783 ~ 52875770 (-) True zeb2a
XM_021597320.2 mRNA downstream 661908 52827783 ~ 52875769 (-) False zeb2a
XM_021597321.2 mRNA downstream 662757 52827783 ~ 52874920 (-) False zeb2a
NM_001160552.1 mRNA upstream 98662 53661100 ~ 53663978 (-) True ubxd2
XM_036974578.1 mRNA upstream 109327 53671765 ~ 53746869 (-) True LOC110520198
XM_021597349.2 mRNA upstream 254673 53817111 ~ 53864985 (-) True rab3gap1
XM_021597355.2 mRNA upstream 321260 53883698 ~ 53893786 (-) False LOC110520203
XR_002472957.2 mRNA upstream 324688 53887126 ~ 53893788 (-) True LOC110520203
TU309646 other downstream 286593 53249926 ~ 53251084 (-) True G272713
TU309282 other downstream 828861 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 1937447 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 1937779 51597399 ~ 51599898 (-) False il1rl1
TU307414 other downstream 2063538 51473324 ~ 51474139 (-) True fgf9
TU311493 other upstream 1117480 54679918 ~ 54682805 (-) True G274344
TU312299 other upstream 1541056 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 1847705 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 1847705 55410143 ~ 55411487 (-) True G275250
TU315090 other upstream 3708344 57270782 ~ 57297762 (-) True si:dkey-91i10.3

Expression Profile