RNA id: XM_021597345.2


Basic Information

Item Value
RNA id XM_021597345.2
length 2562
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110520196
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53600172 ~ 53629285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCGAGGTGAGGATTTACAGATTCACTCCTGTGTACACCTGTGGCACGGCTGGAGTCCGCCTCTATATAGATGGGCTTTTGAATGTCCGTGACACACGTTATTTCATTTTCTCTTTGGACGTCCGTATGGTTTGAAGTACAAACTTTCTGAAGTTCGCTTGACTGCAGGGAGGGAGATGCAACAAAGGACAACAGACAATGGACAGgtgtgctggagtcagagcagatccctaccagctgcaactCATCCATAAATGAAGATCTCTACATATACCCAttcctgccacttccactctgccagaaTTACCGCTCTGTTTCTggctcctgtctcctgttccacatctcaccacctTGCTCTGGATTTCACTCCCCACCATTACAttggattcccctcaggacctgtTTCCCTGTCCTGCTCAGGCAACTCCAACCTCATTCTACACTCCTGTTTTTTTTTGCACTCATCTGAGCTACCCCAGTTCTGCACTTCATATTTCTCTGTGTTCAATAAACACATTCATCCCGACTTCCTCTTCTGAGTCCGCTCTTGGGTTCCCCACCTTCGCTCCTCGTAACAGCATCATCTATGTTAATGTCTAAAGTGGAAGGACAGCTCTGTATCAGCTAATTTCAATATGTGCCAACCacactgttagttcctgtttcCACACACTGCTAGTCAGTTGATTTACTGTACAAGTCCTTTCCACTTCACTCTACTGCATGGAGATGCAACAATGGCATTGAGAACAGCAGGAAGTGTGTTGATGGTCTTTATCTGGTCTGAGACAGTGGTACTGGGTCAGAATGGCTGGAGGGTGACTTACAACCCTCAGAGTATCTGTGCCTTGAAGAGGTCAACAGTGGATCTGTCCTGCTCTTATACATATCCCAGAGGTCATACAGTCACAGGGACATCATGGTTCTATAGATGGTCTGTTGTGAAACCTCAGAATGATGATCGTGTGGAGTACTATGGGGACAAAGTGAATGACTGCACCCTGAGAAtcacagacctgagagagagtGACTCAGCTGAGTACTGTTTTACATTCAGGACTCAGATCATACAAGGTTATGTCTTTCAAAGTGTGAGAAGTGAGAGCTAttctggcagtcctggagtcaggCTGTCCGTCACAGGCCTGGAGGCAAAATTTCTAACTATAGTGACAGAGGGAGAGCCTGtgacactgacctgtagcaccacctgtactctgactgacaaccccaaccccacctacatctggaAGAAGAACAGACAACGTCTCACAAACCCAAAGACCAAAAGTAACTACCTGTACCTAGACCCAGTCAGCAGTGAGGATACAGGCAGATACTCCTGTGCTGTAAACGGCCATGAGAATCTCCCCTCTGCTGAAGAGACTCTCACTGTCAGATATGGCCCAAAGAGAGTGTCAGTATCAGTCAGTCCTTCTGGTAAAATAGTGGAGggcagttcagtgactctgacctgcagcagtgatgccaacccacctgTGGTCAAATACACCTGGTACAAGAAGAACGTAACCTCACCAAAAGCATCAGGACAGAGTTACAGCATCACTAACATCAGCTCTGAGGACAGTGGAGAATACTACTGTGAGGCTGAGAATACAATTGGAGCCCAGATATCTACACCTCAATTGATCATTGTAGCCGAGAAACAAGCTTCTGTGAAGAATGCATCTATAGGAATCATAGTGGTTGTTCTGGttctcatcctctgtctctctgtccttatgTGGTTCAGGAAGAAAGCCTCCAAATCCACCTCCGACacaagagacagaagagacacagTAGACAATGGACAGCAAGACTCTAGTCCCGTGTATGACAACATCTCAGGCATGGCCATAACCCATACTGCAGCACCGACAGCGGACAACCAGGATAACGTTCAATACGCCAGCATTCAACACAGAAACCAGGAAGTGCCTGAATACTCCACTGCCCAACCGTCTCAACCCCAGAAACAGGAGGAGGATGTCCAGTACGCTGCTGTGAAATTTAACCACACCAGTGCTGTTGACATTCCAGTAGAGACCACTGTGGTACAGTACACTGGAAACACCAGGTTTTAGTGTAGCTGGTGAGACATACAAAAGTAAAGAGAAATAAGCCAATTGTTATGGACGAATTGTAGGGATATTTTCCAACTATTCTTCTTGTATAATATGTTTGCTCCAAAAATGCATTTCTTGTAGAACTTCACTGACGTTTTGGTAGTTAGAAAGAGGCCTCATGAAGACAGGACGTCAGCTCTGCATCCCAATTTTAGTCCCTCAGTACTTCTAGTTGGTGTCAACCACAGAcatcacattattattatttcagtCAGTAGGTCCCCTTCCACACCTGGTGATATTAATTTGCTACATCACTACACCCTAgttacacctccacacctggtgacattAACCAGGGTGTAGTGCTGTAGTAAATGAATGTCACCAGGTGTTGAGAtggaggtgtaaccagggtgtagtgctgtagtaaattaatgtcaccaggtgtgaaggtggaggtgtaaccaggatgtagtaatgtagtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309963 lncRNA upstream 2552 53597339 ~ 53597620 (+) True G272989
TU309962 lncRNA upstream 2894 53597024 ~ 53597278 (+) True G272988
TU309958 lncRNA upstream 10307 53589665 ~ 53589865 (+) True G272984
TU309956 lncRNA upstream 13241 53586652 ~ 53586931 (+) True G272982
TU309811 lncRNA upstream 121602 53423870 ~ 53478570 (+) True G272867
TU309979 lncRNA downstream 32705 53661990 ~ 53664217 (+) True G273005
TU309930 lncRNA downstream 38420 53667705 ~ 53673619 (+) False G272966
TU309932 lncRNA downstream 44607 53673892 ~ 53674498 (+) True G272966
TU309995 lncRNA downstream 73497 53702782 ~ 53705181 (+) True G273016
TU309998 lncRNA downstream 77137 53706422 ~ 53706886 (+) True G273019
XM_021597343.2 mRNA upstream 150290 53436028 ~ 53449882 (+) True LOC110520194
XM_021597340.2 mRNA upstream 224498 53347656 ~ 53375674 (+) False LOC110520191
XM_021597341.2 mRNA upstream 224498 53369984 ~ 53375674 (+) False LOC110520191
XM_021597339.2 mRNA upstream 260780 53291284 ~ 53339392 (+) False LOC110520190
XM_036974575.1 mRNA upstream 260781 53319295 ~ 53339391 (+) False LOC110520190
XM_036974577.1 mRNA downstream 2484 53631769 ~ 53644109 (+) False parp14rs3
XM_021597347.2 mRNA downstream 2489 53631774 ~ 53646425 (+) False parp14rs3
XM_021597348.2 mRNA downstream 2489 53631774 ~ 53646425 (+) True parp14rs3
XM_021597350.2 mRNA downstream 236183 53865468 ~ 53869538 (+) False LOC110520200
XM_021597351.2 mRNA downstream 236284 53865569 ~ 53869538 (+) True LOC110520200
TU309244 other upstream 263646 53291330 ~ 53336526 (+) False LOC110520190
TU309190 other upstream 376907 53221427 ~ 53223265 (+) True LOC110520187
TU308945 other upstream 427744 53166952 ~ 53172428 (+) True acvr2aa
TU307177 other upstream 2021489 51573980 ~ 51578683 (+) False LOC110520169
TU305958 other upstream 2699895 50898589 ~ 50900277 (+) True G269291
TU309921 other downstream 19540 53648825 ~ 53652431 (+) False G272965
TU309923 other downstream 19540 53648825 ~ 53652152 (+) True G272965
TU309978 other downstream 28176 53657461 ~ 53658683 (+) True G273004
TU310076 other downstream 211979 53841264 ~ 53841617 (+) True G273094
TU311754 other downstream 1245114 54874399 ~ 54875115 (+) False G274592

Expression Profile