RNA id: XM_021597349.2


Basic Information

Item Value
RNA id XM_021597349.2
length 4244
RNA type mRNA
GC content 0.53
exon number 24
gene id rab3gap1
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53817111 ~ 53864985 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTGCGGAAGAGACTCCATCGACAAGAATCCCATAATGCAACGGACAGCAAAATTCATAAACAGGAATTCATGATGGCGGCTGACAGTGACCCGGAGTCGGAGGTCTTCGAGATCACGGATTTTACCACCGCGtcggagtgggagagGTTTGTGTCCAGAGTAGAAGAGGTTCTGAATGACTGGAAGTTGATTGGGAACAATTCAAACAAACCACCAGAGAAGGGTGAATACACCAGTGGTACCTGGGAGGAGAAGACCCAGGATATCAATTTTGCTGATTTTAAATTCTCCGTAACGCACCACTGCCTGAAGCAGGAGTCTGAGGAGGGCGAGGGGAAGGAGGAACCTGAGGAGGaTGCCTTCCCCACAGCCATGCAGGACCTGCTCTGTATGAACAATGACTTCCCTCCCAGGGCCCACTGCCTCGTCAGATGGTATGGCATGCGTGAGTTTGTGGTCATCTCCCCCGGGGCCAACTGTGAGGCGGTCATCAGTGAGTCCAAGTGCAACCTGCTACTtagctccatctccatctctctggccAACACAGGCTGCCAGGTACCCATGTTTGTGCAGATCCAGCAGAAGTGGAGGAGGATGTACCATGGGGAGTGCCAGGGCCTGGGGGTGCGTACCGACTTTGAGATGGTCCACCTTCGCAAAGTACCCAGCCAATACAACCATCTCTCAGGCCTACTGGACATCTTCAAGTCCAAAATAGGTTGTCCCCTgactcctcttcctcccatcAACATCGCTATCCGCTTCACGTATGTCCTGCAAGACTGGCAGCAGTACTCCTGGCCTCAGCAGCCCCCTGACTTCGACGCTCTCCTCGGAggtgaggtgggaggggtggagtTCGGGAAGCTACCATTTGGAGCGTGTGAGGATCCAATCAGTGAGCTTCACCTAGCGACCACCTGGCCCCACCTGACAGAAGGCATCGTGGTGGATAATGATGTGTACTCTGATCTGGACCCGCTCCAGGCCCCTCATTGGTCAGTCCGAGTCAGGAAAGCAGACAGCCCCACCTGTTTGCTCGGTGACTTCCTGACGGAGTTCTTCAAGCTGTGCTCTAAGAAAGAGTCAACAGAGGAGATCCTGGGACGGGGTCCAGTTGAGGAGGAAGGCAAAGATGACATCAGCCATGCCCTGTCTAAGTTGACAGAGCCCACGGCCGTGCCCATCCCCAAGTTGTCTGTCTCTAACATGGTGCACAGCGCCCGCAAACGCATCCGCCGCCACCGCCGCGTCGACGAATCACCGCTCAGCAACGATGTGCTCAACTCCATACTGCTGtatctCTTCCCAGACGCTGCCATAGACAAGTCATCATCAGAGAACAGCGAGAGCAAGGCTTCTCAATTGAATACTGATGGGAAACCAGAAGAGAAGGAGTCTGACGACTATAACCTGTACAACCAGCTGAAGTCTGCTCCTAGTGACAGTCTGACATACCgcctggctctgtgtgtgtgtctggttaaCTTCTACCATGGAGGGGTCAGGGCGGTGGCTCACCTCTGGCAGGAGTTTGTCCTGGAGATGAGATACCGCTGGGAGAACAACTACCTCGTCTACGGACTGGCCAGTGGTCCTCCAGACCTTCGCTGCTGTCTCCTGCACCAGAAACTCCAGATGCTCAACTGCTGCATTGAGAGGAAGAGGGCGAGGGATGATGGAAGGAAGACGgctgagggagggaaggagaaggagagggagagagggagggagaggaaggtttCAGGGACGACCGGGACTGAGAATGGGCGCCTGGGGCCGGAGAGTGCAGAGATGGGCAGAGAGGTGTCTCCTGGGAAGTCGTGGGACTCGTGGAGTGACAGCGAGGACGAGTTCTTTGAGTGCCTGAGCGACACGGAGGAGATGAAGGAGGCTGGGTCCACAGACGGAGAGAAGGGCGGGGCCAAAGTGGCCAAGCCAGACGGTCGGCTCCACCCCCACGGGAAGTTGACCCTGCTCAACTCCCAGGAACCCCTGTACATCCCTGTTACTCAGGAGCCAGCGCCCATGACAGAAGACCTTCTAGAGGAGCAGTCGGAGGTATTGGCCAAACTGGGCACGTCAGCCGAGGGTGCCCACCTCCGCGCCCGCATGCAGAGTGCCTGTCTGCTCTCAGACATGGAGTCTTTTAAGGCAGCGAACCCTGGCTGTACCCTGGAGGACTTTGTGAGGTGGTACTCACCCAGGGACTACgttgaggaggaggtggtggacgAGAACGGAGACACAGTGGTCAGGGGTGACTTGAGTGCCAGGATGAAGATCCCGGGAAACATGTGGATGGAGGCGTGGGCCACAGCCAAGACTACCCCCGCTCGCAGACAGAGACGCCTGTTTGACGACACCAAGGAGGCTGAGAAGGTGCTGCACTACTTGGCGGTACAGAAGCCAGCAGACCTGACCCGCCATCTCCTGCCCTGCATCCTCCATGCTGCCATCctcaaggagaaggaggaggAGTCAGTAGAGGACATCCTATCTGTTAGAAAGGCCATCCAGCAGGCCACCTCTCATGCCAGCAAGCTGCTGCGCCACCCCAGCCCAGACTACAAGAAACTAGAGGACGTGATTACCCAGCTGATAGCGGTGGAGACGGTCATTGCCCGCTCACGCTCTCTGAAGGCCAAGTTTGGCATCGGGAAGGCAGAGCAGGGCGACAACGCAGAGGATCTGGAGAGGTTCGTGAGCTCTCTGCTGGAGGAGCCTGAGGTGTCTGTGATCGGAGCAGGGCGCGGCCCAGCCGGCAGCATCATCCATAAGCTGTTTGTCAGCGCTCAGAGGGCTGCCCTTTTGGCTCCATTGGATGAAGACACAGGACGTGGGGGTGGAGCTGATGACAAAAAGCCAATGGGTGGTGCCAGTGTGCCAGACTTCCCTCCCCCTGCAGGGCGTGAGATCCTGCTGCGTACGTGTGTCCCGCGGCCCGCGCCCTACTCCAAGGCTCTCCCCCAGCGTCTCTTCTGTGTCCTGATGAGAGAAGACTTCAGGCTGGCTGGGGCCTTCTCATCCGACACCTCCTTcttctgagagagggagagtgagagcgagagagaaggaaatggagagcaagagaggggcTAGTCTGGAAGATGAACCAGGGAGTGTTGGTAGGAGGGCATTTGGGATCTCTGGTCAGTGACTCAATCAAGGCTGTATGCATCTCATCATGAGTGGAGTTATGGGCGAGTCTATGGTTTGTTCCAAAGCCACATGACGGAAAGCTCCACCCATCTCGGGGCTGGCACCATCTTAAGTGTCTCGTGGGAGGATCGGAGAAACAGAACGGTGGGCTGGCAGGCAGCGCTTTCTTATGAAATCATCGCACTGTGCAACGACTCATATCAGACTGTTCGTTGGTTCCCGGAGGGCTACTATTTAGACTATTCAGTTATTTGGGGTTTAAATGCAAAATAGACTGAATTCAATTGGGAACTGAGCTTACTATGACTGTTTTAGTCAAATAAATCTCATGCTTTTTTTGTTGCGTAGCTCTGACAAAAAATAACCTAGGGAAAAATAAAAGTACCCTTGTGTGAAAATAAtttgtttttgggggggggaaatAAGAATATTCCCCTTGACCTATCTCCCTGAGTGGTAATATATTAGGACGCTAAATACCATATCATGTATTTTTCCCTGCCACTTGATTGTGATCGTTTGTGGCTCTCCAGTTGCCCAATCAGTCATTGGTTGAAGACCATCATCTCTTAGACGCTCACAATGCTCTATCTGTTCTGTAGCCCCAGACACTCTCACGCTGCCCATCGCGCTCGTACTGTATGCAGTAATTAGTTACCACTTAAAGCATTTCTCACTATAATAATGCTTATTGATATACATGCAATCACTGTAGGTTTTCCCTAGtcacctaaatgtattgaatcCTAGTTGAAAGTGCAATTACATATTCTATATTGTAAAGACGTAGCCTTACATATAGCAGCGGAAAGAAAGGTGTCCTAGTTAATGTCGTTAGTGCTGTTTCTATGAAGAAGGATGTTAAGTGCTGTTAATTGTTAAGTTGCTGAGTAATTTTACTTAAGTCAATGCAGACAACTTTTCTACTTTGTCAGTAATTGACTGAGGGGATGGATTCAAACTGTGGAGCTAGCCAAAGTCTGTACATGTCAAGTGAGTCTTGGTTGTAAATGTCTCCTAGTTTAGTCCTGTtacattggtaaaaaaaaaaataaacattttaattcAACACTAAAA

Function

GO: NA

KEGG:

id description
K18270 RAB3GAP1; Rab3 GTPase-activating protein catalytic subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310545 lncRNA downstream 50531 53766360 ~ 53766580 (-) True G273523
TU310512 lncRNA downstream 165160 53645933 ~ 53651951 (-) True G273493
TU310466 lncRNA downstream 214744 53602078 ~ 53602367 (-) True G273464
TU310456 lncRNA downstream 225431 53591439 ~ 53591680 (-) True G273454
TU310297 lncRNA downstream 419814 53397079 ~ 53397297 (-) True G273298
TU310614 lncRNA upstream 3724 53868709 ~ 53869460 (-) True G273584
TU310730 lncRNA upstream 153469 54018454 ~ 54025320 (-) True G273686
TU310776 lncRNA upstream 214794 54079779 ~ 54079990 (-) True G273731
TU310780 lncRNA upstream 219384 54084369 ~ 54084590 (-) True G273735
TU310788 lncRNA upstream 229887 54094872 ~ 54095187 (-) True G273743
XM_036974578.1 mRNA downstream 70242 53671765 ~ 53746869 (-) True LOC110520198
NM_001160552.1 mRNA downstream 153133 53661100 ~ 53663978 (-) True ubxd2
XM_021597344.2 mRNA downstream 254673 53537677 ~ 53562438 (-) True LOC110520195
XM_021597342.2 mRNA downstream 422793 53384541 ~ 53394318 (-) True LOC110520193
XM_021597322.2 mRNA downstream 941341 52827783 ~ 52875770 (-) False zeb2a
XM_021597355.2 mRNA upstream 18713 53883698 ~ 53893786 (-) False LOC110520203
XR_002472957.2 mRNA upstream 22141 53887126 ~ 53893788 (-) True LOC110520203
XM_021597360.2 mRNA upstream 316687 54181672 ~ 54191829 (-) False LOC110520207
XR_002472958.2 mRNA upstream 560573 54425558 ~ 54429214 (-) True LOC110520212
XM_036974604.1 mRNA upstream 639079 54504064 ~ 54594080 (-) True LOC110520213
TU309646 other downstream 566027 53249926 ~ 53251084 (-) True G272713
TU309282 other downstream 1108295 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 2216881 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 2217213 51597399 ~ 51599898 (-) False il1rl1
TU307414 other downstream 2342972 51473324 ~ 51474139 (-) True fgf9
TU311493 other upstream 814933 54679918 ~ 54682805 (-) True G274344
TU312299 other upstream 1238509 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 1545158 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 1545158 55410143 ~ 55411487 (-) True G275250
TU315090 other upstream 3405797 57270782 ~ 57297762 (-) True si:dkey-91i10.3

Expression Profile