RNA id: XM_021597352.2


Basic Information

Item Value
RNA id XM_021597352.2
length 5095
RNA type mRNA
GC content 0.50
exon number 14
gene id LOC110520202
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53870750 ~ 53883922 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCATGCACACTGCACAGGGAAGGAGAGCAGACATACACTGTAGAAGCTATTTAAACTAGGAGGAAGTTTTCTTATAAAACAGCTGCTATTAAAATGCAGAACACTATATTTGTTTGTCAAAGAACATTGGAGTAAATGTGAAGCATGAAAATTGGCCAAAGGATTGAGTAAGATATTTCAAAGTTTGAGACCAAGAATACTGAAGGACCCTTGTGGATGATGGAGAGTAGTGAGAGAAGGGTTCTGGGGGCTGTTTTTGAGGTGCTGAGGGGAGAGCTGGAGGTGGTAGGCCTGGGCCTGGAGGAGCTGGGAGATTGTCCCTGGGAGGAGGTGGATGTTCCCCGCATGGAGGGGGGCTGTACTCCCCTTATCACTGCCTGCCAGAGGGGCTTGACTGAGGTTGTACACTTCCTTCTGAAAAGAGGAGCCGATGTGACTCTGTGCAACCATAGCAACCAGACACCACTGCATGTGAGTCTGCCAGTCCTCCAGGGGGTGCTGTTATCAGCCATGTTCAGGGCTCTGCCCCACCAGACCCAGCTCCTCCAGGCTGCTTGGCAGGGAGACCTCCACACCCTGCAGCACCTTCTGGCCCAGACTGACCTAGTGGACGTGAACACTCAGAACCGCGACGGGCTGACCCCTCTAATGCTGGCTGTGAGGGACGTCGACTTGTTTGAGGAGCTGGACGTCCGGTTGCCATGGGAATACAGACCTGTGGAGGTGGTCAGGGAACTGCTGGCTCTCTCAGCTGACCTGGGGGTGTGTGACGTCAACGGCTGTTCTGCTCTTCACTATGCTGCACAGATAGAGAGCCCCCTGAAAGACGAACTCATCCACATGATGGTTGAGTCCCTCAGACAGCCAGCGCCCACGCCCCTGGACCTGCAGTGCTTCCACCCTGATGAGCTGAGAGTAAactcccccagcccctctccctctctaaccgaTGAGCTGAGAGCAACAAACTCCCCAAGCTCCTCTCCCTATCTGACCCAAAATGTCCTCATTCAGACTGCTGCCAGCACAGAGGATTTGCTGGAGTCTCCAGAGTGCGTTCCTTTATCCGACCATCATAAAGCCATCAATCAAGATAAGgggctctccctctccttccagaGCGCCATGGATACCCTGATGGACATGAGGCAAGCCTAccaagatctggggaagggtagcagTCAAGGTTCATCTCTACCCAGTCTGTGGTTCAGAGCCAGACACTTAGACAAACTGGATCCTACACCGGGGCTATTGAAGACCACAGGAAGCTCATCCTGCCTGCCTGTTCCCCCCAGGCTCAGATGTGAGGCTGTTGCCCCCAGCCCGGTGGCCCCTCACCCAGCCCAGCTGAGCCAATCTGCCCCCGGTCTATTGGAGCCTCTCCTGGACTCTCTGGTCCAGGCCCGAGTTCACATCCAGAACAGGCTTGGATGTGTTGAAACGGAGAAAAAAAGCAGTTGTCGAAAGTTGCCTTTTCCAATCATCTCTATCCAGGGCTCCTTCCCTGCCCTGCTTCCAGGCCCTATCAGGACCCCCAAGCTGTTAGCCCCTCTGGAGGGGAGGCATAGAAACGAAGGAGTGCTGCCCGGCCTGAAGCACCCTTCTCCCCTAAAGCCCATCAGCCTTGTGCCCCTGATGCCCCTGACCTCCATAACCTCCAGGCTGAGGAGGGAGAGGCTGGCCAGGACCAGGGTGAGCCCCAGAGGGTCCCCAGGCACCAGGGGGGGCAGCGAGGAGAGCAGCTTCAGTAGCCAATCCTCCATCGACttggaggtagaggtggatgaCAATAAGAGAGACTTAAGAGACATAAGAGAGACTACAGCAAAACAACACACTGGAGAGACTTTTGAGGGAAGGTTGCAGTTGGATCTAGACTCATCTGGAAAGTTTAATGTTGGAGATTACAGTCAGGATAATGCAGACCATAGGAATAGGGAGTCGACAAGACATCAGGGTGCCTTTCCTAGGGATAACAAGGAAGGAGTATCTATCAAATCTGACCCTGGAGGGAGAGGGTACAAAGCAATAATTGAGTTGAGTCACCAACTTAACCCCGATTTGACGAATTTCAAAGATGTTAACAGCACTTCATGCTTTGAGAGGGACTGTGAGGGTGAGGTTGTGGCAGTGGAATGGACAAAGGTGATGTGCTCAGGGGGTCTCTCAAAAGAGACTACCAGTACTGAGCCAACTACCACATGTCCCTTTGCATCTAAAAGAAATGGAAACAAAGAGATTCAAGTTGATGACAATGCAAAGACTAGTATTGTGGATGACACCAAGTATCAATGTCTTCCTTCTACTGTGAATGTCACACTACCTGAATTAAATCCTCCTACAGAGAAAAAGATCAAACCTATCAAGCCTGTCAAGAACAAAGAGAGTAGAGGCAGCACTAGCGTCCAAACCAATCAGTCTTTCAACGTCTTGGCACACAAAGATCACATTCGGGGGAACAGCAAGTCCAAAAGCAACCTGAGGACTTCACCCATTCCTTCACAAGTCAAAGGCAAAGTCAGAAAACCTCCTGATCTCATCGTCAATGGGATAATCTCTACAAAGACTGGTCAGAAAAGCACAGACTCAACCTCTGTCAGAACGAGGGTTACAGAGCCTGTACATCCAAGCTGCAAAAAGCTGAACAACGACAAAAAGACACTTCAAATAAAAGTACCTTGTCAGAAACATATTCAGCAGAGGGAACCGAAAAGTGCCAGACAAGCCAAAACTGGGTCACAACTGGGGACCCTGAGGGCCAAGTCAGCTGTGGACTACATCACGTATAGTGATATCTTCCAGGAAATCAACACCGGGGATGAGGAGGGACCAGTCATCTATGAGATGTTTGCCGGCCCGGTGTTTGACAACATAAGAGTTTCCAGTTCATGTGAGAGGACGAGGCAGGTCCTGTCTGCCCCGTCTAGGAAGACCCAAACCCACAGGACCAAACACAAATGCCCTAAACCACTGGAGAGCAGAAGAGTGAGGCGAAGCCCTGTGGACAAGGCCAAGCAGAGGAAGAACAGGGCTATTAGGCCTATATCCAGGGGAAAGTCGCATCTGACGCCTATCGCCAGCACGCATGACAAAGACCACGTGGTGGTTATTTCTGGGCTTGACTGGCAAATCCACATCCAGACTAAGACTGAGCTGGTCCTCAGTAAAGATGGAGAAGAGACAGTCTCTCCCAGCACACCAGAGGTTCAGGAGGGGGACCATATGTTGTCATTGTCAGTGATCGAAGAAGTGCTGTCTATGTCCAGCCATGCGCCAAACCCACTAATCTCTCACCACCGGCCGAGAGACGAAACCTCCCCCAGTCAGACAAAGACTAAACTCACATCTCATTCTGACCCAGATGATGATCACCTCCATGTGCTGCACAATAGGGGACCCATGGGGAACAACATGTcagaaaatgagaaaaacaagGCAAATCATTTAGACCATTCATTCACCCCATCCAATTGCCCTGTGCAGCCTAAGATCAACACCTGGACCTCAGGTAGCTGTGACAGCAGGACAGTGTCCCCGGTGTTCCAGAAGTTTCTGGATGATGTGGGGGAGGGACCACTGACCGATGACCTGCTCCGTTGTCTGGCAGAAGAGCTGATATCACTGGATGAGAGAGATGGTGTATGTCCAGAAAACAACTGTGACTCAGACCAGAGGGAATTCAGAAACAATTCTGAGCTGAGATGTGAGAAGTCATTACTGGGGGATTTTACCACACCTGGAGAAGTGCTCAGTGGGTCTGGGTTGGTAGTGGATGATGCCATCACCTGGAGGAAAGGAGAAGTGCTGGGCAGAGGAGCTTATGGAACTGTGTTCTGTGGACTGACCAACCAAGGCCAGCTGATAGCCGTAAAACAGGTGGCCCTGGACGCCTCAGACCTTGAAACCGCAGACAAGGAGTACAACCGTCTACAGGAGGAAGTAGACCTCTTAAAGAACCTCCATCACGGCAACATTGTGGGATTTCTGGGCACCTCTCTGCGGGACCACATGGTCAGCATCTTCATGGAGTATGTCCCCGGAGGCTCCATCGCCAGCGTGCTCCACCGCTTTGGTCCCCTTCCGGAGCGCGTCCTGGCCCTGTACACCCGCCAGATCCTGGAGGGGGTGTCCTACCTGCACCTCAACAGGGTCATCCACAGGGACCTGAAGGGGAACAATGTGATGTTGATGCCTACGGGAGTAGTCAAGTTGATAGACTTCGGCTGCGCCCGCCGTTTGAGATGcctcactcacacatacagtcATAGTGACCTCCTGAAATCGGTGCACGGCACGCCCTATTGGATGGCGCCAGAGGTAATCAACGAGACGGGTCACGGCAGGAAGTCGGACATCTGGAGCGTGGGGTGCACAGTGTTTGAAATGGCCACGGGGAAGCCGCCGCTGTCACACATGGACAAGATGGCAGCGCTGTTCTACATTGGGGCGAGGCGAGGCCTAATGCCCTCGCTGCCTGACAGGTTCTCAGAGGACGCCAGGGATTTTGTTCAAGTCTGTCTGACCAATGACCAGAAACAGCGCCCGTCTGCAGAACAACTATTGGACCACCCTTTCATTCCTAACAATGTGATCTTAGTTTAGGACCTACACTCAAAGCTGTTAGGAAATAACGCCAGATGTGCCAATCAGGAACACCTATCAATCATTTATATAACATGTCCAAATTGTATTTTTAAATGCCCTTTCAAATGTATTGCTTGAAACTTAGATACTTTCCCTAGGCTATTACACAAATAATTCCTTGAATATTTGGGGCACCTTTGATACAACAAGCATTTGTCAAACATATTGCATCCATACTTTTCATATAGTATACAGTAAATACCAAATCATACAACATAGGTAATGTTTTAAGGTAGTGGTAACCGTAAGATTTATTTgtagaacaaaaaaacaaaaaaaaatggatgTCAAGGTTTGCATTTGCCTTCTTGTTGAGACCAAAccactgtaataatgtctgtGCCCAAGAGTATAATCACTATCAGGACTGGGGAAATATACCATCTTGGCCTCAATACAAACTCTCTGCACACTGAAATAAAGGACTAACCAGTCAAAGAATAGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310104 lncRNA upstream 5327 53865155 ~ 53865423 (+) True G273119
TU310095 lncRNA upstream 10778 53857406 ~ 53859972 (+) True G273113
TU310075 lncRNA upstream 52213 53817120 ~ 53818537 (+) True G273093
TU310037 lncRNA upstream 113968 53756576 ~ 53756782 (+) True G273056
TU310019 lncRNA upstream 139489 53730078 ~ 53731261 (+) True G273039
TU310169 lncRNA downstream 78099 53962021 ~ 54025301 (+) True G273173
TU310251 lncRNA downstream 196861 54080783 ~ 54081079 (+) True G273252
TU310252 lncRNA downstream 197226 54081148 ~ 54081395 (+) True G273253
TU310253 lncRNA downstream 199617 54083539 ~ 54083773 (+) True G273254
TU310256 lncRNA downstream 203229 54087151 ~ 54087491 (+) True G273257
XM_021597350.2 mRNA upstream 1212 53865468 ~ 53869538 (+) False LOC110520200
XM_021597351.2 mRNA upstream 1212 53865569 ~ 53869538 (+) True LOC110520200
XM_021597347.2 mRNA upstream 224325 53631774 ~ 53646425 (+) False parp14rs3
XM_021597348.2 mRNA upstream 224325 53631774 ~ 53646425 (+) True parp14rs3
XM_036974577.1 mRNA upstream 226641 53631769 ~ 53644109 (+) False parp14rs3
XM_036974583.1 mRNA downstream 20388 53904310 ~ 53990481 (+) False LOC110520204
XM_036974584.1 mRNA downstream 20388 53904310 ~ 53990481 (+) True LOC110520204
XM_036964950.1 mRNA downstream 161055 54044977 ~ 54149088 (+) False LOC110520205
XM_036974586.1 mRNA downstream 324953 54208875 ~ 54317829 (+) False LOC110520208
XM_036974587.1 mRNA downstream 324953 54208875 ~ 54317829 (+) False LOC110520208
TU310076 other upstream 29133 53841264 ~ 53841617 (+) True G273094
TU309978 other upstream 212067 53657461 ~ 53658683 (+) True G273004
TU309921 other upstream 218319 53648825 ~ 53652431 (+) False G272965
TU309923 other upstream 218598 53648825 ~ 53652152 (+) True G272965
TU309244 other upstream 534224 53291330 ~ 53336526 (+) False LOC110520190
TU311754 other downstream 990477 54874399 ~ 54875115 (+) False G274592
TU312073 other downstream 1490624 55374546 ~ 55375009 (+) False LOC110520231
TU312074 other downstream 1490624 55374546 ~ 55375526 (+) True LOC110520231
TU312821 other downstream 2016272 55900194 ~ 55900743 (+) True G275542
TU312833 other downstream 2031407 55915329 ~ 55916133 (+) False G275553

Expression Profile