RNA id: XM_021597355.2


Basic Information

Item Value
RNA id XM_021597355.2
length 3692
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110520203
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53883698 ~ 53893788 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATGCGTCCGTTCGGTCCTTGGTGTGCTGTATGAAAGCTGGAGAGCTATGGCGGCGTGCCGGGGATCCTCTTCAAAATGGTTTTTCACCCGGGAGCAAATCGAAGCCACGCCGTCCCGCCGTTCGGGAGTGGATCCGGACAAGGAGCTATCTTACCGACAGCAGGCGGCTAACCTCATTCAAGATATGGGCCAGCGACTCAACGTCTCACAACTTACAATAAATACAGCAATTGTTTACATGCATAGATTTTATATGTTCCACTCTTTCACCAAATTCCACAGAAATATAATTTCTCCAACCACCTTATTCCTAGCTGCAAAAGTTGAAGAGCAACCTCGGAAACTTGAGCATGTTATTAAAGTTGCCCATGCTTGTCTAAACCCTCAAGAGACCCCGCTTGATACAAAGAGTAATGCATACCTCCAGCAAGCTCAAGAGCTGGTGATACTTGAAACCATAGTGCTGCAGACTTTAGGATTTGAAATAACTATTGAACATCCACACACTGATGTGGTGAAATGTTCCCAGCTAGTGAGAGCAAGCAAGGATCTGGCACAGACTTCCTATTTCATGGCTACCAACAGCCTCCACCTCACCACCTTCTGCCTGCAACACAAGCCCACAGTAATTGCCTGCGTCTGCATCCACCTGGCCTGTAAATGGTCCAACTGGGAGATCCCTGTCTCCACTGACGGGAAACACTGGTGGGAGTACGTGGACAACTCTGTCACACTGGAGCTTCTCGATGAACTGACGCATGAGTTCCTTCAGATTCTGGAGAAGACACCGAGCAGGTTGAAGAGGATACGAAATTGGAGGACCACGCAAGCTGCCAAGAAGACCAAGGGGGATGGCTCTCAGGCAAGCGACCCCTACCCAGGACCCTCCCTGATCCACGAGCATTCCCTGGGAGATGCCATCCCTGGGGTCTCCAACTCAGCCTTCTCCAAAGCCGCTTCATCGTTCCCTGTCCCTCTGCCAGGGCACGCCAGTGGGCCCCTCTCCCTGGACTCTATCGCGTCCATGCAGGGCAGCTCTTATACCTTCACAGCCCCCAGCGACTGGCCCCAGGATACGGGGGGTCGCTTGGAGGGAGGAAGCTATTCCCTCAAAACAGATGCACTTGGCCTCCAGCAGGGTGCTCCAATGAACCCGAACAGACCCGATAAGACAGGAGAGTTCAACCCTACTAAACATGAACACAAGGTTGGGTCGGGGGGGGGTGTGGGGAAGCAACAGCAGCCAATTTTCCCTCCACCGCCCCCGCCGGCTCAGAAAATGTCCCTGGACAAGTATAGAGAGAAGCACGCTGCTGAGCTGGCGGTGCAGCATAAACGCAGGGCAGAGCAGCAGAGTTTCGAGCCTGAGGGCAGGGACTCGTATATACCCTCTGTCCAATCAGACCACAGGAAACACATGCAGCTCCACCCTAACCCTGGGAGCAGCAGCACCACTGCCTCCCCTCTTAAAATGAAGCTCGCCACGCCAGGCCAGGACAAGGTCCCCTCTGACAAACGGGACAAGGGGGGCTCACTCAAACTCCGCCTTCCAGTTCCTTCTCAGGGGGGCGTGGCCAGCAAAGAGGAGTTGAAGATGAAAATCAAGGTGTCCTCAGAGCGCCACAGCTCTTCTGATGAGGGCGGGGCCAAGAGCAAACATTCCAGCCCGCTAGTGAGCAAGGAGAAGCACCGAGAACACTCAACCCACCGCCACCACCACAAGCAGCACGGCCACTCTCACCTTCATGCAGCACAGCACAGTGGCAACGGCCGAGGCGTCCCCGAGGGGCCAGCGGGGGCCGGGCCAGCCGTCCTCCGGAGACCCCTAGGGCTGGGGGGTGTTGAGGGGGTGGCGGGCATGGCCCCTAGCTCTGGTTCCAGCTCCTCCCGCAAGAGGGGGCACCCACACGTCGCAAGCCACAACCACCACTCCTCCAAAACGAGCAAAAGCTCCAAGGGCGGCGCAgGTGGGCTACGAACATCTCAACGCCCTAGTGAAACTGGACAAGAAGCCAGTGGAGAGCCGCAGTCTTGAGGGAGCCGGCCGGGCGTTTGCTGCCAACGGGCAGATTACAAACACTTTTGACATGCTCGATTCTCTCAAGTGCCCAAGGAATTAACTCATGAACCCTTTGTAGCAAAGCATAggaaggtaaagtaaaaaatataatGAAGTGTAGGACATCTCAACGGTTGAGGCAAAAAGAGAGAAATGAATGCTTCCTGATCATCTGATCTTTTGGCAGTGCTGGTATAGTCCTGCCCCTTTCAATGTGTAATTGCTGCTTTGTCCTCCATATTCTCAGGATGGGTCATGGAATGCGGACGTGTGTAAGTGTTAGGGGGTCATCCGAGTTTAAATCTCCATGTTCGGAGGGGAAAAAAGTATAAATACTGAAAAGGCATGAAAGGTGCAATTTCTAATAgtcttttttaaataataatttaagCAGCATTGCCACAGCTGTTATCCATTCTGGTGAGAAAACATGTCAAGTAGCCCTCCGTTGTGGCAGGAGGAGGCTTAGCTCAGACAGAAGTAAAGGCAGGCCAAACATGGCTGCCGATAGAAATTggatttttaaattattattttttcctTTTTTATGCTGAATACTGTATGTAGGATCTGCATGCAATCATCAAAGGGATAATGCAGAAAGCTGACCGCTGTTTACAGAAAGTAAAGATAAATGTACATACATTTTTGTATGTTTAAAAAGCTATACCATAAATACTCAGGTTTGGAGCTGCTTGTAACTATAACAAGATATATATATTGGGAAAAAATACTATTGTAACTTGATGTAGGAGTCCTATCATCGGTGATTCTGACTGCCGCATTCCTGTGTTGTGCTTAGAGCCTGTACTACACATGGCTGGCTGCCAGGAGATGGCACTTGAACTTCGACCTTTCCAACTCAGCCAATCCAGACCCTACAAACAGTAACAACCACCTGGCATGTTGTCAGAGGCCATGCAATttgtacactttttttttttttttttacttccaaGATTACCTTAAGCTGGATGCCAAAGGCTTTGCCTCACAAAAAAATTAAAGACATACATGAGAAAAGGACAATAATAATAGTGCTATAATGTTTACATGCCTAACCTTTGCTGTGAAGAGCATTTACACAAAATTGTTACTTGGCTTGACGCTGTAGCCCATAGATACAAAGCTGTAGGTAAGTAATGTAGTATTGTTTATGTCTGGTGAAAGAAAACAGCATAAaagtagcctgggtgccagtctttCTGCTCTCTGGCCAACTCCTTATGTAATTGATATGGCTTGACAATGGATTAGGCAAGAGCACCAACCGATCTGGGACTAGGCTAGCAGTTAAGGCTGTCAGTGTTGATACAGTATGGTGGCTTGTATGCTGTTTGTTCTCCAACGGGTCAGTTTCCTAATATATATGGAGTATATCGTTCTCAATTCTGGACACACAATAGTAACTATTCTTTGACTGGTTAGTCCTTTATTTCAGTGTGCAGAGAGTTTGTATTGAGGCCAAGATGGTATATTTCCCCAGTCCTGATAGTGATTATACTCTTGGGCacagacattattacagtggTTTGGTCTCAACAAGAAGGCAAATGCAAACCTTGAcatccatttttttttgtttttttgttctacAAATAAATCTTACGGTTACCACTACCTTAAAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310614 lncRNA downstream 14238 53868709 ~ 53869460 (-) True G273584
TU310545 lncRNA downstream 117118 53766360 ~ 53766580 (-) True G273523
TU310512 lncRNA downstream 231747 53645933 ~ 53651951 (-) True G273493
TU310466 lncRNA downstream 281331 53602078 ~ 53602367 (-) True G273464
TU310456 lncRNA downstream 292018 53591439 ~ 53591680 (-) True G273454
TU310730 lncRNA upstream 124668 54018454 ~ 54025320 (-) True G273686
TU310776 lncRNA upstream 185993 54079779 ~ 54079990 (-) True G273731
TU310780 lncRNA upstream 190583 54084369 ~ 54084590 (-) True G273735
TU310788 lncRNA upstream 201086 54094872 ~ 54095187 (-) True G273743
TU310797 lncRNA upstream 218266 54112052 ~ 54112255 (-) True G273752
XM_021597349.2 mRNA downstream 18713 53817111 ~ 53864985 (-) True rab3gap1
XM_036974578.1 mRNA downstream 136829 53671765 ~ 53746869 (-) True LOC110520198
NM_001160552.1 mRNA downstream 219720 53661100 ~ 53663978 (-) True ubxd2
XM_021597344.2 mRNA downstream 321260 53537677 ~ 53562438 (-) True LOC110520195
XM_021597342.2 mRNA downstream 489380 53384541 ~ 53394318 (-) True LOC110520193
XM_021597360.2 mRNA upstream 287886 54181672 ~ 54191829 (-) False LOC110520207
XR_002472958.2 mRNA upstream 531772 54425558 ~ 54429214 (-) True LOC110520212
XM_036974604.1 mRNA upstream 610278 54504064 ~ 54594080 (-) True LOC110520213
XM_021597379.2 mRNA upstream 723742 54617528 ~ 54624544 (-) True LOC110520216
XR_002472959.2 mRNA upstream 739952 54633738 ~ 54636478 (-) True LOC110520218
TU309646 other downstream 632614 53249926 ~ 53251084 (-) True G272713
TU309282 other downstream 1174882 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 2283468 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 2283800 51597399 ~ 51599898 (-) False il1rl1
TU307414 other downstream 2409559 51473324 ~ 51474139 (-) True fgf9
TU311493 other upstream 786132 54679918 ~ 54682805 (-) True G274344
TU312299 other upstream 1209708 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 1516357 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 1516357 55410143 ~ 55411487 (-) True G275250
TU315090 other upstream 3376996 57270782 ~ 57297762 (-) True si:dkey-91i10.3

Expression Profile